Wall clock time and date at job start Tue Mar 31 2020 17:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47172 * 98.90728 * 3 2 1 5 5 C 1.34778 * 119.99691 * 269.99571 * 4 3 2 6 6 O 1.21280 * 119.99851 * 179.97438 * 5 4 3 7 7 C 1.50693 * 120.00342 * 0.02562 * 5 4 3 8 8 C 1.52994 * 109.47382 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47285 * 179.97438 * 8 7 5 10 10 F 1.39899 * 109.46947 * 60.00526 * 9 8 7 11 11 F 1.39911 * 109.47065 * 180.02562 * 9 8 7 12 12 F 1.39900 * 109.47275 * 300.00154 * 9 8 7 13 13 C 1.46500 * 120.00286 * 89.99871 * 4 3 2 14 14 C 1.53076 * 109.43981 * 299.79634 * 13 4 3 15 15 C 1.53183 * 109.29478 * 181.23571 * 14 13 4 16 16 N 1.46930 * 108.89468 * 305.57480 * 15 14 13 17 17 C 1.36937 * 120.63259 * 233.51494 * 16 15 14 18 18 H 1.08000 * 119.99761 * 151.83401 * 17 16 15 19 19 C 1.38806 * 120.00219 * 331.83653 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46925 * 118.73328 * 53.53726 * 16 15 14 26 26 C 1.53033 * 109.45902 * 59.99653 * 13 4 3 27 27 H 4.40643 * 5.51485 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.47321 * 338.90791 * 3 2 1 29 29 H 1.09003 * 109.47248 * 218.90489 * 3 2 1 30 30 H 1.09001 * 109.47174 * 300.00246 * 7 5 4 31 31 H 1.09006 * 109.47190 * 59.99475 * 7 5 4 32 32 H 1.08993 * 109.47478 * 300.00176 * 8 7 5 33 33 H 1.09000 * 109.47256 * 60.00483 * 8 7 5 34 34 H 1.08994 * 109.45870 * 179.97438 * 13 4 3 35 35 H 1.09005 * 109.39190 * 61.35477 * 14 13 4 36 36 H 1.09004 * 109.62337 * 301.25270 * 14 13 4 37 37 H 1.09005 * 109.58619 * 185.72200 * 15 14 13 38 38 H 1.08998 * 109.58733 * 65.43770 * 15 14 13 39 39 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58688 * 66.18006 * 25 16 15 41 41 H 1.08996 * 109.58570 * 186.45714 * 25 16 15 42 42 H 1.09003 * 109.49897 * 58.68032 * 26 13 4 43 43 H 1.09000 * 109.52987 * 298.59684 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2147 -1.3646 5 6 3.3594 -0.8400 -2.1729 6 8 3.7632 -0.6627 -3.3027 7 6 3.1084 -2.2393 -1.6734 8 6 3.4399 -3.2429 -2.7796 9 6 3.1856 -4.6638 -2.2721 10 9 1.8407 -4.7960 -1.9103 11 9 3.4893 -5.5816 -3.2835 12 9 3.9949 -4.9131 -1.1585 13 6 3.3778 1.5752 -1.8505 14 6 2.0743 2.3760 -1.7979 15 6 2.3257 3.7882 -2.3355 16 7 3.4379 4.3908 -1.5879 17 6 3.2922 5.6109 -0.9835 18 1 3.8724 5.8509 -0.1047 19 6 2.3990 6.5393 -1.5003 20 7 1.9444 6.4026 -2.7279 21 14 1.8420 7.9826 -0.4534 22 1 2.4942 7.9087 0.8787 23 1 2.2223 9.2538 -1.1203 24 1 0.3673 7.9331 -0.2864 25 6 4.7093 3.6596 -1.5017 26 6 4.4323 2.2498 -0.9702 27 1 -1.0500 0.0002 0.0000 28 1 3.0098 -0.9580 0.3698 29 1 3.0090 0.8006 0.6454 30 1 3.7383 -2.4337 -0.8053 31 1 2.0604 -2.3422 -1.3920 32 1 2.8097 -3.0485 -3.6473 33 1 4.4878 -3.1403 -3.0612 34 1 3.7355 1.5347 -2.8793 35 1 1.7276 2.4357 -0.7662 36 1 1.3173 1.8837 -2.4085 37 1 1.4284 4.3934 -2.2065 38 1 2.5824 3.7361 -3.3935 39 1 1.3205 7.0515 -3.0892 40 1 5.1614 3.5947 -2.4914 41 1 5.3857 4.1813 -0.8247 42 1 5.3523 1.6656 -0.9920 43 1 4.0655 2.3129 0.0543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733367116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:54 Heat of formation + Delta-G solvation = -117.932271 kcal Electronic energy + Delta-G solvation = -29225.244145 eV Core-core repulsion = 24664.557133 eV Total energy + Delta-G solvation = -4560.687012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.39321 -47.88589 -47.87215 -40.31405 -37.66875 -35.74146 -34.12066 -33.06180 -32.14462 -30.33114 -29.67396 -27.53184 -27.14896 -24.97193 -23.11128 -22.24881 -21.78105 -19.82043 -19.35363 -18.85979 -18.66846 -17.98160 -17.88611 -16.90253 -16.53866 -16.07887 -15.89339 -14.95057 -14.82547 -14.74686 -14.33933 -14.26253 -14.06211 -14.01385 -13.95761 -13.78610 -13.64122 -13.35870 -13.28881 -13.00337 -12.67086 -12.66158 -12.32719 -12.02930 -11.75529 -11.53104 -11.26062 -11.00123 -10.76699 -10.57582 -10.46868 -10.23604 -10.18126 -10.11161 -9.86632 -9.75198 -9.55218 -8.69877 -8.45166 -6.71839 -5.81968 -3.24949 2.31832 2.46492 2.58691 2.78964 3.20077 3.34807 3.42818 3.44677 3.56678 3.72058 3.76814 4.30392 4.37896 4.46625 4.55877 4.60735 4.92102 5.10892 5.22378 5.29117 5.31909 5.39836 5.43909 5.46741 5.56113 5.78854 5.88394 6.02833 6.15035 6.25796 6.42197 6.52070 6.59126 6.73000 6.79172 6.90089 7.30301 7.36764 7.56852 7.62670 7.76873 8.07745 8.41654 9.17638 9.80869 10.37504 11.26708 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.025067 B = 0.002642 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.730727 B =10594.003525 C =10963.172669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.208 4.208 3 C 0.214 3.786 4 N -0.599 5.599 5 C 0.520 3.480 6 O -0.536 6.536 7 C -0.148 4.148 8 C -0.150 4.150 9 C 0.453 3.547 10 F -0.184 7.184 11 F -0.183 7.183 12 F -0.184 7.184 13 C 0.144 3.856 14 C -0.142 4.142 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.148 3.852 26 C -0.139 4.139 27 H 0.216 0.784 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.020 0.980 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 -21.156 4.745 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C 0.092 3.908 4 N -0.330 5.330 5 C 0.308 3.692 6 O -0.413 6.413 7 C -0.188 4.188 8 C -0.189 4.189 9 C 0.399 3.601 10 F -0.165 7.165 11 F -0.165 7.165 12 F -0.166 7.166 13 C 0.043 3.957 14 C -0.182 4.182 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.021 3.979 26 C -0.179 4.179 27 H 0.233 0.767 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.986 -20.953 4.059 21.366 hybrid contribution -0.773 0.510 0.661 1.138 sum 0.212 -20.443 4.719 20.982 Atomic orbital electron populations 1.24942 0.95930 1.00613 0.98393 1.23445 0.94836 1.00812 1.01825 1.18423 0.83980 1.03662 0.84762 1.48274 1.64305 1.07389 1.13016 1.20217 0.77408 0.86182 0.85413 1.90726 1.45900 1.86006 1.18691 1.21699 1.05317 0.92523 0.99299 1.22617 1.08055 0.87232 1.00982 1.20618 0.73971 0.90051 0.75507 1.93192 1.34526 1.96727 1.92088 1.93199 1.92947 1.70001 1.60328 1.93184 1.73365 1.95470 1.54579 1.21295 0.96829 0.78091 0.99516 1.22548 0.95046 0.99039 1.01563 1.20754 0.93382 0.88312 0.92809 1.44094 1.06847 1.18671 1.61852 1.19207 1.22710 0.90602 1.05748 0.91594 1.25061 1.01767 0.97465 0.95309 1.70038 1.34608 1.36901 1.13016 0.86240 0.78365 0.82336 0.79927 1.20246 1.21705 1.21576 1.20855 0.89578 0.89724 0.97774 1.22391 0.97246 0.98728 0.99533 0.76705 0.88404 0.87298 0.87555 0.87576 0.86375 0.86321 0.88402 0.92296 0.93230 0.89209 0.96220 0.93631 0.96180 0.92359 0.92682 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 19.25 29.55 0.57 -1.46 16 2 C -0.21 -2.48 11.92 -37.12 -0.44 -2.92 16 3 C 0.21 2.28 5.16 -6.83 -0.04 2.25 16 4 N -0.60 -7.99 2.37 -169.35 -0.40 -8.39 16 5 C 0.52 6.80 7.67 -10.99 -0.08 6.71 16 6 O -0.54 -8.91 15.31 5.56 0.09 -8.83 16 7 C -0.15 -1.31 4.01 -27.89 -0.11 -1.42 16 8 C -0.15 -1.26 4.55 -26.73 -0.12 -1.38 16 9 C 0.45 3.88 3.16 37.16 0.12 3.99 16 10 F -0.18 -1.71 16.80 2.25 0.04 -1.68 16 11 F -0.18 -1.74 17.32 2.25 0.04 -1.70 16 12 F -0.18 -1.64 16.80 2.25 0.04 -1.60 16 13 C 0.14 2.41 2.48 -67.87 -0.17 2.24 16 14 C -0.14 -2.68 4.75 -26.60 -0.13 -2.80 16 15 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 16 N -0.59 -14.43 3.00 -172.33 -0.52 -14.95 16 17 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -25.90 11.20 55.49 0.62 -25.28 16 21 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 26 C -0.14 -2.27 5.31 -26.62 -0.14 -2.41 16 27 H 0.22 1.77 7.80 -54.09 -0.42 1.35 16 28 H 0.10 0.72 6.44 -51.93 -0.33 0.38 16 29 H 0.11 1.16 6.46 -51.93 -0.34 0.83 16 30 H 0.11 0.72 7.06 -51.93 -0.37 0.35 16 31 H 0.11 0.88 7.61 -51.93 -0.40 0.48 16 32 H 0.12 1.02 8.10 -51.93 -0.42 0.59 16 33 H 0.12 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.10 1.87 6.90 -51.93 -0.36 1.51 16 35 H 0.06 1.12 7.01 -51.93 -0.36 0.76 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.97 6.72 -51.93 -0.35 0.63 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -31.35 363.21 -6.20 -37.56 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.73 Total: 0.16 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.82 Total: 2.91 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.30 Total: -48.62 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.11 Total: -4.97 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.35 -6.20 -37.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733367116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.375 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds