Wall clock time and date at job start Tue Mar 31 2020 17:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47172 * 98.90728 * 3 2 1 5 5 C 1.34778 * 119.99691 * 269.99571 * 4 3 2 6 6 O 1.21280 * 119.99851 * 179.97438 * 5 4 3 7 7 C 1.50693 * 120.00342 * 0.02562 * 5 4 3 8 8 C 1.52994 * 109.47382 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47285 * 179.97438 * 8 7 5 10 10 F 1.39899 * 109.46947 * 60.00526 * 9 8 7 11 11 F 1.39911 * 109.47065 * 180.02562 * 9 8 7 12 12 F 1.39900 * 109.47275 * 300.00154 * 9 8 7 13 13 C 1.46500 * 120.00286 * 89.99871 * 4 3 2 14 14 C 1.53076 * 109.43981 * 299.79634 * 13 4 3 15 15 C 1.53183 * 109.29478 * 181.23571 * 14 13 4 16 16 N 1.46930 * 108.89468 * 305.57480 * 15 14 13 17 17 C 1.36937 * 120.63259 * 233.51494 * 16 15 14 18 18 H 1.08000 * 119.99761 * 151.83401 * 17 16 15 19 19 C 1.38806 * 120.00219 * 331.83653 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46925 * 118.73328 * 53.53726 * 16 15 14 26 26 C 1.53033 * 109.45902 * 59.99653 * 13 4 3 27 27 H 4.40643 * 5.51485 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.47321 * 338.90791 * 3 2 1 29 29 H 1.09003 * 109.47248 * 218.90489 * 3 2 1 30 30 H 1.09001 * 109.47174 * 300.00246 * 7 5 4 31 31 H 1.09006 * 109.47190 * 59.99475 * 7 5 4 32 32 H 1.08993 * 109.47478 * 300.00176 * 8 7 5 33 33 H 1.09000 * 109.47256 * 60.00483 * 8 7 5 34 34 H 1.08994 * 109.45870 * 179.97438 * 13 4 3 35 35 H 1.09005 * 109.39190 * 61.35477 * 14 13 4 36 36 H 1.09004 * 109.62337 * 301.25270 * 14 13 4 37 37 H 1.09005 * 109.58619 * 185.72200 * 15 14 13 38 38 H 1.08998 * 109.58733 * 65.43770 * 15 14 13 39 39 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.58688 * 66.18006 * 25 16 15 41 41 H 1.08996 * 109.58570 * 186.45714 * 25 16 15 42 42 H 1.09003 * 109.49897 * 58.68032 * 26 13 4 43 43 H 1.09000 * 109.52987 * 298.59684 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2147 -1.3646 5 6 3.3594 -0.8400 -2.1729 6 8 3.7632 -0.6627 -3.3027 7 6 3.1084 -2.2393 -1.6734 8 6 3.4399 -3.2429 -2.7796 9 6 3.1856 -4.6638 -2.2721 10 9 1.8407 -4.7960 -1.9103 11 9 3.4893 -5.5816 -3.2835 12 9 3.9949 -4.9131 -1.1585 13 6 3.3778 1.5752 -1.8505 14 6 2.0743 2.3760 -1.7979 15 6 2.3257 3.7882 -2.3355 16 7 3.4379 4.3908 -1.5879 17 6 3.2922 5.6109 -0.9835 18 1 3.8724 5.8509 -0.1047 19 6 2.3990 6.5393 -1.5003 20 7 1.9444 6.4026 -2.7279 21 14 1.8420 7.9826 -0.4534 22 1 2.4942 7.9087 0.8787 23 1 2.2223 9.2538 -1.1203 24 1 0.3673 7.9331 -0.2864 25 6 4.7093 3.6596 -1.5017 26 6 4.4323 2.2498 -0.9702 27 1 -1.0500 0.0002 0.0000 28 1 3.0098 -0.9580 0.3698 29 1 3.0090 0.8006 0.6454 30 1 3.7383 -2.4337 -0.8053 31 1 2.0604 -2.3422 -1.3920 32 1 2.8097 -3.0485 -3.6473 33 1 4.4878 -3.1403 -3.0612 34 1 3.7355 1.5347 -2.8793 35 1 1.7276 2.4357 -0.7662 36 1 1.3173 1.8837 -2.4085 37 1 1.4284 4.3934 -2.2065 38 1 2.5824 3.7361 -3.3935 39 1 1.3205 7.0515 -3.0892 40 1 5.1614 3.5947 -2.4914 41 1 5.3857 4.1813 -0.8247 42 1 5.3523 1.6656 -0.9920 43 1 4.0655 2.3129 0.0543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733367116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:53 Heat of formation + Delta-G solvation = -135.039009 kcal Electronic energy + Delta-G solvation = -29225.985948 eV Core-core repulsion = 24664.557133 eV Total energy + Delta-G solvation = -4561.428816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.08260 -48.58886 -48.55415 -41.42197 -39.12936 -37.04863 -35.08458 -34.36472 -33.43788 -31.97419 -31.34586 -28.40855 -28.19741 -26.64867 -24.20547 -23.88653 -23.08392 -20.89541 -20.77609 -19.54604 -19.51722 -18.88977 -18.73046 -18.62822 -17.53855 -17.14362 -16.91266 -16.69561 -15.68872 -15.65365 -15.46788 -15.38873 -15.07834 -14.97642 -14.92945 -14.77629 -14.71258 -14.67709 -14.46107 -14.19840 -14.07733 -14.03434 -13.28499 -13.18245 -13.03240 -12.74957 -12.68177 -12.56112 -12.43626 -12.22076 -11.98798 -11.93148 -11.55540 -11.38714 -11.29263 -11.13712 -10.79591 -10.58285 -9.83805 -8.71669 -7.88141 -5.34245 1.37086 1.46728 1.48560 1.56324 1.59042 1.78190 1.94214 2.31422 2.51119 2.84981 3.00419 3.10432 3.28088 3.50768 3.55926 3.65400 3.78738 3.93350 3.97610 4.08030 4.21324 4.31704 4.38631 4.46412 4.54239 4.64099 4.66474 4.77830 4.80479 4.86263 5.03211 5.06818 5.10077 5.15577 5.30199 5.44442 5.51791 5.63793 5.68330 6.32133 6.38279 6.72731 7.05070 7.13201 7.83713 8.36357 9.19025 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.025067 B = 0.002642 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.730727 B =10594.003525 C =10963.172669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.232 4.232 3 C 0.210 3.790 4 N -0.597 5.597 5 C 0.518 3.482 6 O -0.577 6.577 7 C -0.138 4.138 8 C -0.147 4.147 9 C 0.460 3.540 10 F -0.187 7.187 11 F -0.189 7.189 12 F -0.183 7.183 13 C 0.154 3.846 14 C -0.120 4.120 15 C 0.182 3.818 16 N -0.608 5.608 17 C -0.259 4.259 18 H 0.072 0.928 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.967 3.033 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.291 1.291 25 C 0.142 3.858 26 C -0.122 4.122 27 H 0.236 0.764 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.056 0.944 38 H -0.012 1.012 39 H 0.249 0.751 40 H 0.008 0.992 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 -22.938 7.121 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.233 4.233 3 C 0.089 3.911 4 N -0.328 5.328 5 C 0.308 3.692 6 O -0.457 6.457 7 C -0.178 4.178 8 C -0.186 4.186 9 C 0.406 3.594 10 F -0.169 7.169 11 F -0.171 7.171 12 F -0.165 7.165 13 C 0.051 3.949 14 C -0.160 4.160 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.389 4.389 18 H 0.090 0.910 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.218 1.218 25 C 0.016 3.984 26 C -0.162 4.162 27 H 0.253 0.747 28 H 0.157 0.843 29 H 0.130 0.870 30 H 0.155 0.845 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.006 0.994 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.366 -22.776 6.477 23.718 hybrid contribution -0.872 1.034 -0.118 1.358 sum 0.495 -21.742 6.359 22.658 Atomic orbital electron populations 1.25657 0.96909 1.00173 0.97545 1.23850 0.95596 1.01355 1.02542 1.18770 0.83456 1.06002 0.82904 1.48158 1.64419 1.05838 1.14342 1.20917 0.76139 0.87485 0.84664 1.90718 1.47669 1.86724 1.20581 1.21701 1.06656 0.89278 1.00146 1.22571 1.08241 0.86979 1.00767 1.20526 0.73735 0.89822 0.75294 1.93189 1.34839 1.96739 1.92098 1.93190 1.92984 1.70235 1.60669 1.93188 1.73321 1.95473 1.54497 1.20843 0.95379 0.80101 0.98576 1.22220 0.96426 0.96292 1.01087 1.20482 0.91939 0.90554 0.91442 1.44339 1.08495 1.18654 1.61698 1.19574 1.22241 0.91339 1.05766 0.91003 1.25842 1.02369 1.00270 0.96306 1.70204 1.35497 1.37933 1.14749 0.85210 0.77549 0.78859 0.78850 1.18682 1.22179 1.21809 1.21027 0.87964 0.91811 0.97591 1.22184 0.98330 0.96125 0.99550 0.74708 0.84319 0.87003 0.84524 0.86416 0.86886 0.85981 0.91108 0.91917 0.93409 0.92586 0.99354 0.94186 0.97384 0.91659 0.89967 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 19.25 74.32 1.43 -2.30 16 2 C -0.23 -4.92 11.92 31.12 0.37 -4.55 16 3 C 0.21 3.75 5.16 84.57 0.44 4.19 16 4 N -0.60 -14.61 2.37 -808.11 -1.91 -16.52 16 5 C 0.52 12.48 7.67 87.65 0.67 13.15 16 6 O -0.58 -18.83 15.31 -3.03 -0.05 -18.87 16 7 C -0.14 -1.99 4.01 29.84 0.12 -1.87 16 8 C -0.15 -2.14 4.55 30.59 0.14 -2.00 16 9 C 0.46 6.81 3.16 71.98 0.23 7.04 16 10 F -0.19 -3.04 16.80 44.97 0.76 -2.29 16 11 F -0.19 -3.27 17.32 44.97 0.78 -2.49 16 12 F -0.18 -2.71 16.80 44.97 0.76 -1.96 16 13 C 0.15 5.04 2.48 45.03 0.11 5.15 16 14 C -0.12 -4.56 4.75 30.68 0.15 -4.41 16 15 C 0.18 8.94 5.30 86.36 0.46 9.39 16 16 N -0.61 -30.11 3.00 -699.11 -2.09 -32.21 16 17 C -0.26 -13.97 9.58 84.03 0.81 -13.16 16 18 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 19 C -0.05 -2.92 4.92 84.86 0.42 -2.51 16 20 N -0.94 -55.82 11.20 21.65 0.24 -55.58 16 21 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 C 0.14 5.69 6.52 86.36 0.56 6.26 16 26 C -0.12 -3.75 5.31 30.67 0.16 -3.59 16 27 H 0.24 3.33 7.80 -4.42 -0.03 3.29 16 28 H 0.14 1.33 6.44 -2.39 -0.02 1.32 16 29 H 0.11 1.98 6.46 -2.39 -0.02 1.96 16 30 H 0.14 1.18 7.06 -2.39 -0.02 1.16 16 31 H 0.12 1.52 7.61 -2.38 -0.02 1.50 16 32 H 0.11 1.79 8.10 -2.39 -0.02 1.78 16 33 H 0.12 1.73 8.10 -2.39 -0.02 1.71 16 34 H 0.07 2.74 6.90 -2.39 -0.02 2.73 16 35 H 0.06 2.33 7.01 -2.38 -0.02 2.32 16 36 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.06 3.11 6.06 -2.38 -0.01 3.09 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.07 2.14 6.72 -2.39 -0.02 2.13 16 Total: -1.00 -70.17 363.21 7.59 -62.57 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.03 Total: 10.17 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.06 Total: 10.78 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -3.77 Total: -104.30 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.87 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 2.29 Total: -6.74 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.17 7.59 -62.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733367116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.467 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds