Wall clock time and date at job start Tue Mar 31 2020 17:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21644 * 119.99879 * 359.97438 * 7 6 5 9 9 C 1.47075 * 120.00196 * 180.02562 * 7 6 5 10 10 C 1.36071 * 127.13712 * 0.02562 * 9 7 6 11 11 O 1.33768 * 109.83342 * 180.02562 * 10 9 7 12 12 C 1.34957 * 111.33316 * 359.97438 * 11 10 9 13 13 C 1.40115 * 107.65662 * 359.72391 * 12 11 10 14 14 C 1.39179 * 120.32101 * 179.61862 * 13 12 11 15 15 C 1.37870 * 119.73393 * 0.61742 * 14 13 12 16 16 C 1.38608 * 120.24733 * 359.68850 * 15 14 13 17 17 C 1.38334 * 120.58815 * 0.02562 * 16 15 14 18 18 O 1.35950 * 120.06591 * 180.02562 * 17 16 15 19 19 C 1.42903 * 116.99889 * 359.97438 * 18 17 16 20 20 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 3 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 3 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 30 30 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 31 31 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 34 34 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 35 35 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 36 36 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 37 37 H 1.08003 * 125.08423 * 359.96387 * 10 9 7 38 38 H 1.08008 * 120.14021 * 180.28138 * 14 13 12 39 39 H 1.07993 * 119.87816 * 179.67242 * 15 14 13 40 40 H 1.08001 * 119.71017 * 179.97438 * 16 15 14 41 41 H 1.08994 * 109.47163 * 179.97438 * 19 18 17 42 42 H 1.09002 * 109.47216 * 299.99785 * 19 18 17 43 43 H 1.08998 * 109.47107 * 59.99491 * 19 18 17 44 44 H 0.97000 * 120.00040 * 94.99981 * 20 3 2 45 45 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1657 2.1458 -0.2590 9 6 5.8858 4.4410 0.0339 10 6 5.1491 5.5683 0.2286 11 8 5.9561 6.6336 0.2863 12 6 7.2494 6.2784 0.1364 13 6 7.2922 4.8871 -0.0241 14 6 8.5096 4.2383 -0.2087 15 6 9.6789 4.9687 -0.2206 16 6 9.6444 6.3445 -0.0560 17 6 8.4405 7.0022 0.1224 18 8 8.4190 8.3521 0.2823 19 6 9.6775 9.0286 0.2561 20 7 1.6524 2.0975 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5383 23 6 0.0486 3.2944 2.5547 24 7 -1.1382 3.8528 2.6653 25 14 1.2421 3.3451 3.9909 26 1 1.0351 2.1507 4.8488 27 1 2.6352 3.3499 3.4768 28 1 1.0047 4.5748 4.7887 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.9954 0.8312 0.6659 35 1 3.8499 1.0377 -1.0961 36 1 3.4409 3.5484 0.1308 37 1 4.0735 5.5986 0.3215 38 1 8.5388 3.1662 -0.3367 39 1 10.6252 4.4669 -0.3583 40 1 10.5656 6.9081 -0.0663 41 1 9.5181 10.0979 0.3942 42 1 10.3109 8.6488 1.0577 43 1 10.1634 8.8550 -0.7040 44 1 2.2718 2.1231 1.9978 45 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753473978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:22 Heat of formation + Delta-G solvation = -31.336510 kcal Electronic energy + Delta-G solvation = -28064.543785 eV Core-core repulsion = 24049.468588 eV Total energy + Delta-G solvation = -4015.075198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.74652 -39.79208 -39.26375 -37.17182 -36.81406 -33.89828 -32.73428 -32.29138 -30.57554 -30.31761 -29.55518 -28.01929 -27.54434 -24.38347 -23.40527 -22.83997 -22.48347 -21.86909 -20.33991 -19.89633 -18.61063 -17.96265 -17.51074 -16.91871 -16.68543 -15.88652 -15.74707 -15.69578 -15.48075 -15.29340 -15.11321 -14.50586 -14.13403 -13.80068 -13.49732 -13.22454 -13.19965 -12.85747 -12.83267 -12.62615 -12.50325 -12.48546 -11.67808 -11.61063 -11.57254 -11.49545 -11.19821 -11.02385 -10.74607 -10.43896 -10.33991 -10.04399 -9.95482 -9.86091 -9.53398 -9.02972 -8.88631 -8.80128 -8.05928 -7.39605 -5.86102 -3.22531 0.63670 1.05434 1.65472 2.44437 2.84483 3.24792 3.29966 3.35058 3.36454 3.41765 3.61570 4.23632 4.45854 4.50416 4.53016 4.72304 4.79500 4.88576 5.00465 5.08734 5.14301 5.14859 5.19773 5.25764 5.34414 5.40865 5.74105 5.76447 5.85469 5.88121 5.88813 6.03296 6.12913 6.24697 6.27463 6.36802 6.43901 6.49429 6.56048 6.57947 6.73619 6.91080 7.09624 7.26456 7.73831 7.89799 8.32077 8.38342 9.10074 9.82420 10.01798 11.31384 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003049 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.579909 B = 9179.929749 C =10509.346417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.114 3.886 6 N -0.712 5.712 7 C 0.586 3.414 8 O -0.545 6.545 9 C -0.234 4.234 10 C 0.081 3.919 11 O -0.171 6.171 12 C 0.017 3.983 13 C -0.049 4.049 14 C -0.098 4.098 15 C -0.094 4.094 16 C -0.193 4.193 17 C 0.146 3.854 18 O -0.313 6.313 19 C 0.027 3.973 20 N -0.747 5.747 21 C -0.243 4.243 22 H 0.095 0.905 23 C 0.008 3.992 24 N -0.930 5.930 25 Si 0.878 3.122 26 H -0.285 1.285 27 H -0.277 1.277 28 H -0.292 1.292 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.407 0.593 37 H 0.224 0.776 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.732 5.434 -7.150 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.011 4.011 6 N -0.363 5.363 7 C 0.373 3.627 8 O -0.424 6.424 9 C -0.239 4.239 10 C 0.012 3.988 11 O -0.070 6.070 12 C -0.030 4.030 13 C -0.051 4.051 14 C -0.117 4.117 15 C -0.112 4.112 16 C -0.212 4.212 17 C 0.100 3.900 18 O -0.227 6.227 19 C -0.068 4.068 20 N -0.391 5.391 21 C -0.373 4.373 22 H 0.113 0.887 23 C -0.188 4.188 24 N -0.577 5.577 25 Si 0.709 3.291 26 H -0.211 1.211 27 H -0.203 1.203 28 H -0.218 1.218 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.243 0.757 37 H 0.240 0.760 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 20.799 5.290 -7.246 22.651 hybrid contribution 0.577 0.283 1.284 1.436 sum 21.375 5.573 -5.962 22.880 Atomic orbital electron populations 1.21781 0.95184 0.99739 1.03775 1.22035 0.97359 0.97773 1.00169 1.20561 0.89755 0.93095 0.90795 0.91860 1.21753 0.95530 0.82109 1.01670 1.45839 1.06528 1.11056 1.72925 1.17018 0.82405 0.86458 0.76798 1.90746 1.56074 1.45329 1.50241 1.21001 0.92393 0.94608 1.15895 1.24770 0.96661 0.83178 0.94199 1.83918 1.14776 1.34690 1.73601 1.18633 0.82602 0.92294 1.09491 1.19201 0.93172 0.90894 1.01815 1.20623 0.89562 1.01110 1.00359 1.20856 0.98281 0.92807 0.99234 1.20937 0.95439 0.95872 1.08943 1.17665 0.89690 0.82689 0.99943 1.86160 1.32621 1.16308 1.87573 1.23101 0.84547 0.97626 1.01520 1.42854 1.16839 1.67696 1.11741 1.19050 0.90631 1.27761 0.99855 0.88708 1.24656 0.96339 1.00324 0.97470 1.69689 1.19443 1.41699 1.26865 0.86668 0.81081 0.77426 0.83975 1.21133 1.20344 1.21812 0.89352 0.93868 0.94849 0.93497 0.92626 0.91664 0.91190 0.75687 0.76025 0.84171 0.84810 0.84250 0.88014 0.92423 0.92430 0.80488 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.18 37.16 0.34 -2.23 16 2 C -0.13 -2.13 5.61 -26.73 -0.15 -2.28 16 3 C 0.17 2.84 2.59 -67.93 -0.18 2.67 16 4 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 5 C 0.11 1.76 5.23 -4.05 -0.02 1.74 16 6 N -0.71 -10.96 5.38 -61.50 -0.33 -11.29 16 7 C 0.59 9.63 7.80 -12.67 -0.10 9.53 16 8 O -0.54 -10.28 16.28 5.24 0.09 -10.20 16 9 C -0.23 -3.50 6.31 -103.25 -0.65 -4.15 16 10 C 0.08 1.05 11.52 29.95 0.35 1.40 16 11 O -0.17 -2.44 10.53 5.29 0.06 -2.39 16 12 C 0.02 0.24 7.33 -38.45 -0.28 -0.04 16 13 C -0.05 -0.73 6.29 -105.00 -0.66 -1.39 16 14 C -0.10 -1.28 9.88 -39.37 -0.39 -1.67 16 15 C -0.09 -0.94 10.03 -39.58 -0.40 -1.34 16 16 C -0.19 -1.88 9.02 -39.41 -0.36 -2.23 16 17 C 0.15 1.79 6.70 -39.12 -0.26 1.52 16 18 O -0.31 -3.57 10.50 -19.58 -0.21 -3.77 16 19 C 0.03 0.17 9.81 101.05 0.99 1.16 16 20 N -0.75 -15.43 4.31 -53.43 -0.23 -15.66 16 21 C -0.24 -6.05 8.24 -15.06 -0.12 -6.17 16 22 H 0.10 2.54 7.55 -52.49 -0.40 2.15 16 23 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 24 N -0.93 -27.39 13.97 55.49 0.78 -26.61 16 25 Si 0.88 20.90 27.74 -169.99 -4.72 16.18 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.19 6.51 56.52 0.37 -5.82 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 29 H 0.09 1.86 5.99 -51.93 -0.31 1.55 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.41 5.99 7.06 -40.82 -0.29 5.70 16 37 H 0.22 2.19 7.41 -52.48 -0.39 1.80 16 38 H 0.14 1.86 7.53 -52.48 -0.40 1.47 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.14 0.90 6.26 -52.49 -0.33 0.57 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 43 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 44 H 0.36 7.66 5.65 -40.82 -0.23 7.43 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -32.48 374.68 -7.01 -39.49 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.10 Total: 11.97 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.99 Total: -3.36 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.21 Total: -53.57 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.06 Total: -16.36 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.72 Total: 16.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.48 -7.01 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753473978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.155 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds