Wall clock time and date at job start Tue Mar 31 2020 17:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21644 * 119.99879 * 359.97438 * 7 6 5 9 9 C 1.47075 * 120.00196 * 180.02562 * 7 6 5 10 10 C 1.36071 * 127.13712 * 0.02562 * 9 7 6 11 11 O 1.33768 * 109.83342 * 180.02562 * 10 9 7 12 12 C 1.34957 * 111.33316 * 359.97438 * 11 10 9 13 13 C 1.40115 * 107.65662 * 359.72391 * 12 11 10 14 14 C 1.39179 * 120.32101 * 179.61862 * 13 12 11 15 15 C 1.37870 * 119.73393 * 0.61742 * 14 13 12 16 16 C 1.38608 * 120.24733 * 359.68850 * 15 14 13 17 17 C 1.38334 * 120.58815 * 0.02562 * 16 15 14 18 18 O 1.35950 * 120.06591 * 180.02562 * 17 16 15 19 19 C 1.42903 * 116.99889 * 359.97438 * 18 17 16 20 20 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 3 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 3 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 30 30 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 31 31 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 34 34 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 35 35 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 36 36 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 37 37 H 1.08003 * 125.08423 * 359.96387 * 10 9 7 38 38 H 1.08008 * 120.14021 * 180.28138 * 14 13 12 39 39 H 1.07993 * 119.87816 * 179.67242 * 15 14 13 40 40 H 1.08001 * 119.71017 * 179.97438 * 16 15 14 41 41 H 1.08994 * 109.47163 * 179.97438 * 19 18 17 42 42 H 1.09002 * 109.47216 * 299.99785 * 19 18 17 43 43 H 1.08998 * 109.47107 * 59.99491 * 19 18 17 44 44 H 0.97000 * 120.00040 * 94.99981 * 20 3 2 45 45 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1657 2.1458 -0.2590 9 6 5.8858 4.4410 0.0339 10 6 5.1491 5.5683 0.2286 11 8 5.9561 6.6336 0.2863 12 6 7.2494 6.2784 0.1364 13 6 7.2922 4.8871 -0.0241 14 6 8.5096 4.2383 -0.2087 15 6 9.6789 4.9687 -0.2206 16 6 9.6444 6.3445 -0.0560 17 6 8.4405 7.0022 0.1224 18 8 8.4190 8.3521 0.2823 19 6 9.6775 9.0286 0.2561 20 7 1.6524 2.0975 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5383 23 6 0.0486 3.2944 2.5547 24 7 -1.1382 3.8528 2.6653 25 14 1.2421 3.3451 3.9909 26 1 1.0351 2.1507 4.8488 27 1 2.6352 3.3499 3.4768 28 1 1.0047 4.5748 4.7887 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 3.9954 0.8312 0.6659 35 1 3.8499 1.0377 -1.0961 36 1 3.4409 3.5484 0.1308 37 1 4.0735 5.5986 0.3215 38 1 8.5388 3.1662 -0.3367 39 1 10.6252 4.4669 -0.3583 40 1 10.5656 6.9081 -0.0663 41 1 9.5181 10.0979 0.3942 42 1 10.3109 8.6488 1.0577 43 1 10.1634 8.8550 -0.7040 44 1 2.2718 2.1231 1.9978 45 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753473978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:21 Heat of formation + Delta-G solvation = -53.573809 kcal Electronic energy + Delta-G solvation = -28065.508067 eV Core-core repulsion = 24049.468588 eV Total energy + Delta-G solvation = -4016.039479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.73523 -40.67990 -40.45897 -38.40444 -37.93349 -35.33543 -34.25970 -33.57748 -32.06370 -31.42563 -30.56468 -29.34105 -28.15321 -25.78041 -24.75643 -24.10355 -23.50237 -22.97774 -21.76141 -21.10536 -19.86870 -19.19280 -18.83901 -17.78367 -17.64978 -17.12063 -16.99030 -16.86376 -16.46001 -16.22476 -16.06299 -15.92851 -15.70422 -15.10287 -14.69273 -14.57784 -14.46634 -14.28695 -14.05618 -13.99528 -13.37497 -13.24931 -13.09714 -12.89786 -12.87572 -12.51813 -12.30542 -12.27642 -12.21791 -12.11015 -11.88653 -11.58180 -11.39899 -11.19959 -10.93815 -10.91662 -10.11372 -9.77532 -9.28300 -8.96366 -7.94124 -5.26034 -0.31498 0.14387 0.63043 1.39848 1.42929 1.48839 1.50902 2.00770 2.14077 2.28901 2.52456 2.62847 3.30471 3.37762 3.44060 3.60303 3.80182 3.89043 3.96309 4.08500 4.14179 4.26717 4.33900 4.38242 4.41327 4.45715 4.46692 4.57454 4.74790 4.75421 4.83927 4.87546 5.02486 5.09206 5.12550 5.21373 5.23335 5.39186 5.42782 5.50317 5.54544 5.67929 5.74560 5.89516 6.28583 6.30935 6.49666 7.12860 7.15045 7.89348 8.07840 9.26857 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003049 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.579909 B = 9179.929749 C =10509.346417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.122 3.878 6 N -0.709 5.709 7 C 0.589 3.411 8 O -0.574 6.574 9 C -0.263 4.263 10 C 0.096 3.904 11 O -0.182 6.182 12 C -0.014 4.014 13 C -0.070 4.070 14 C -0.124 4.124 15 C -0.077 4.077 16 C -0.182 4.182 17 C 0.138 3.862 18 O -0.336 6.336 19 C 0.015 3.985 20 N -0.747 5.747 21 C -0.202 4.202 22 H 0.071 0.929 23 C -0.057 4.057 24 N -0.982 5.982 25 Si 0.936 3.064 26 H -0.292 1.292 27 H -0.253 1.253 28 H -0.304 1.304 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.410 0.590 37 H 0.248 0.752 38 H 0.129 0.871 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.363 0.637 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.878 5.479 -7.851 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.060 3.940 4 H 0.081 0.919 5 C -0.003 4.003 6 N -0.360 5.360 7 C 0.377 3.623 8 O -0.456 6.456 9 C -0.268 4.268 10 C 0.027 3.973 11 O -0.081 6.081 12 C -0.060 4.060 13 C -0.072 4.072 14 C -0.143 4.143 15 C -0.095 4.095 16 C -0.201 4.201 17 C 0.093 3.907 18 O -0.251 6.251 19 C -0.079 4.079 20 N -0.390 5.390 21 C -0.333 4.333 22 H 0.089 0.911 23 C -0.248 4.248 24 N -0.633 5.633 25 Si 0.766 3.234 26 H -0.219 1.219 27 H -0.178 1.178 28 H -0.231 1.231 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.247 0.753 37 H 0.264 0.736 38 H 0.147 0.853 39 H 0.187 0.813 40 H 0.196 0.804 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.196 0.804 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 23.997 5.316 -7.983 25.842 hybrid contribution -0.315 0.280 1.373 1.437 sum 23.681 5.597 -6.609 25.215 Atomic orbital electron populations 1.21694 0.96344 1.00423 1.01648 1.21965 0.96121 0.96984 1.01782 1.20708 0.90937 0.93454 0.88867 0.91866 1.21672 0.93877 0.82241 1.02464 1.45805 1.06377 1.11158 1.72664 1.17173 0.82271 0.86766 0.76055 1.90718 1.56736 1.46307 1.51829 1.20979 0.93275 0.94318 1.18194 1.25202 0.97432 0.82448 0.92205 1.83901 1.15274 1.35125 1.73755 1.19039 0.83049 0.92695 1.11230 1.19444 0.93611 0.91445 1.02693 1.20732 0.90288 1.00946 1.02288 1.21278 0.98597 0.93026 0.96571 1.21393 0.95954 0.95858 1.06851 1.17968 0.89727 0.83420 0.99631 1.86135 1.35583 1.15911 1.87421 1.23469 0.83136 0.98160 1.03096 1.42845 1.15290 1.67668 1.13234 1.18956 0.91165 1.24892 0.98270 0.91116 1.25239 0.97767 1.01677 1.00153 1.69844 1.21780 1.44408 1.27305 0.85699 0.80501 0.76264 0.80923 1.21884 1.17764 1.23136 0.93503 0.93818 0.92868 0.90204 0.92650 0.91987 0.89558 0.75305 0.73577 0.85256 0.81275 0.80385 0.86446 0.90863 0.90697 0.80422 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.18 71.98 0.66 -4.18 16 2 C -0.13 -3.81 5.61 30.60 0.17 -3.64 16 3 C 0.17 5.42 2.59 44.99 0.12 5.53 16 4 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 5 C 0.12 3.52 5.23 86.38 0.45 3.97 16 6 N -0.71 -20.98 5.38 -466.71 -2.51 -23.49 16 7 C 0.59 19.13 7.80 86.56 0.68 19.80 16 8 O -0.57 -21.62 16.28 -4.17 -0.07 -21.69 16 9 C -0.26 -7.88 6.31 -18.97 -0.12 -8.00 16 10 C 0.10 2.47 11.52 67.32 0.78 3.25 16 11 O -0.18 -5.19 10.53 -3.97 -0.04 -5.24 16 12 C -0.01 -0.40 7.33 23.00 0.17 -0.23 16 13 C -0.07 -2.08 6.29 -20.11 -0.13 -2.21 16 14 C -0.12 -3.17 9.88 22.41 0.22 -2.94 16 15 C -0.08 -1.35 10.03 22.27 0.22 -1.13 16 16 C -0.18 -2.98 9.02 22.38 0.20 -2.78 16 17 C 0.14 3.18 6.70 22.57 0.15 3.34 16 18 O -0.34 -7.10 10.50 -92.98 -0.98 -8.08 16 19 C 0.02 0.14 9.81 113.37 1.11 1.26 16 20 N -0.75 -30.01 4.31 -322.95 -1.39 -31.41 16 21 C -0.20 -10.07 8.24 84.03 0.69 -9.38 16 22 H 0.07 3.87 7.55 -2.91 -0.02 3.85 16 23 C -0.06 -3.11 5.50 84.86 0.47 -2.64 16 24 N -0.98 -59.60 13.97 21.65 0.30 -59.30 16 25 Si 0.94 43.54 27.74 68.60 1.90 45.44 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.25 -10.56 6.51 99.48 0.65 -9.92 16 28 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 29 H 0.05 1.97 5.99 -2.39 -0.01 1.95 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 11.56 7.06 -92.71 -0.65 10.91 16 37 H 0.25 4.63 7.41 -2.91 -0.02 4.61 16 38 H 0.13 3.49 7.53 -2.91 -0.02 3.46 16 39 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.18 1.44 6.26 -2.91 -0.02 1.42 16 41 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 43 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 44 H 0.36 14.72 5.65 -92.71 -0.52 14.20 16 45 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -73.03 374.68 2.86 -70.17 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.20 Total: 33.58 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.84 Total: 0.01 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -3.60 Total: -114.20 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.09 Total: -35.01 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.44 kcal Total: -73.03 2.86 -70.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753473978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.594 kcal (2) G-P(sol) polarization free energy of solvation -73.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds