Wall clock time and date at job start Tue Mar 31 2020 17:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 N 1.46504 * 109.46843 * 180.02562 * 3 2 1 5 5 C 1.46757 * 124.34927 * 90.00311 * 4 3 2 6 6 C 1.54484 * 105.47244 * 163.00662 * 5 4 3 7 7 H 1.09009 * 110.96539 * 267.26153 * 6 5 4 8 8 C 1.50695 * 110.97077 * 143.53500 * 6 5 4 9 9 O 1.21292 * 120.00074 * 3.08770 * 8 6 5 10 10 N 1.34781 * 120.00170 * 183.08535 * 8 6 5 11 11 C 1.39993 * 120.00169 * 175.76062 * 10 8 6 12 12 C 1.38916 * 119.99926 * 214.83684 * 11 10 8 13 13 C 1.38007 * 119.99314 * 179.78971 * 12 11 10 14 14 C 1.38905 * 120.00322 * 0.46995 * 13 12 11 15 15 O 1.35780 * 120.00096 * 179.76300 * 14 13 12 16 16 C 1.34814 * 117.00223 * 185.36033 * 15 14 13 17 17 H 1.08006 * 120.00008 * 354.96628 * 16 15 14 18 18 C 1.38626 * 120.00290 * 174.96879 * 16 15 14 19 19 N 1.31576 * 119.99813 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00297 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46904 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47071 * 119.99755 * 20 18 16 23 23 H 1.48506 * 109.46819 * 239.99580 * 20 18 16 24 24 C 1.38912 * 120.00265 * 359.78385 * 14 13 12 25 25 C 1.38003 * 119.99981 * 359.97438 * 24 14 13 26 26 C 1.54632 * 101.80005 * 25.39347 * 6 5 4 27 27 C 1.34424 * 124.34531 * 270.02449 * 4 3 2 28 28 O 1.21280 * 124.94703 * 0.39989 * 27 4 3 29 29 H 1.08998 * 109.47234 * 300.00219 * 1 2 3 30 30 H 1.09005 * 109.46879 * 59.99484 * 1 2 3 31 31 H 1.08991 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47227 * 240.00317 * 2 1 3 33 33 H 1.08997 * 109.47087 * 120.00373 * 2 1 3 34 34 H 1.09001 * 109.46908 * 60.00122 * 3 2 1 35 35 H 1.08997 * 109.47543 * 300.00094 * 3 2 1 36 36 H 1.08998 * 110.24933 * 44.00729 * 5 4 3 37 37 H 1.09001 * 110.32031 * 282.04075 * 5 4 3 38 38 H 0.97002 * 119.99888 * 355.49245 * 10 8 6 39 39 H 1.07997 * 120.00767 * 0.02562 * 12 11 10 40 40 H 1.08001 * 120.00189 * 180.22771 * 13 12 11 41 41 H 0.96999 * 120.00189 * 179.97438 * 19 18 16 42 42 H 1.07996 * 119.99989 * 180.02562 * 24 14 13 43 43 H 1.07998 * 119.99817 * 179.97438 * 25 24 14 44 44 H 1.09001 * 110.48171 * 93.90273 * 26 6 5 45 45 H 1.08994 * 110.48682 * 216.54245 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4428 -1.2126 6 6 5.7409 1.8778 -0.7500 7 1 5.8672 2.9562 -0.8463 8 6 6.8109 1.1418 -1.5143 9 8 6.5032 0.3739 -2.4013 10 7 8.1099 1.3369 -1.2124 11 6 9.0994 0.5883 -1.8607 12 6 10.2444 0.2070 -1.1727 13 6 11.2177 -0.5347 -1.8108 14 6 11.0570 -0.8916 -3.1435 15 8 12.0169 -1.6172 -3.7726 16 6 11.8528 -1.8352 -5.0928 17 1 10.9486 -1.5095 -5.5856 18 6 12.8444 -2.4776 -5.8179 19 7 13.9461 -2.8740 -5.2176 20 14 12.6172 -2.7790 -7.6474 21 1 11.3020 -2.2408 -8.0781 22 1 13.7016 -2.0983 -8.3996 23 1 12.6674 -4.2383 -7.9185 24 6 9.9145 -0.5057 -3.8330 25 6 8.9388 0.2317 -3.1937 26 6 5.7308 1.4524 0.7366 27 6 4.2639 1.4419 1.1089 28 8 3.8356 1.4343 2.2435 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9379 2.1534 -1.9388 37 1 4.3699 0.4432 -1.6457 38 1 8.3594 1.9988 -0.5486 39 1 10.3711 0.4876 -0.1376 40 1 12.1063 -0.8344 -1.2749 41 1 14.6399 -3.3238 -5.7249 42 1 9.7894 -0.7836 -4.8691 43 1 8.0507 0.5320 -3.7299 44 1 6.1606 0.4573 0.8515 45 1 6.2741 2.1761 1.3442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771734045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:25 Heat of formation + Delta-G solvation = -70.477350 kcal Electronic energy + Delta-G solvation = -27355.667133 eV Core-core repulsion = 23338.894661 eV Total energy + Delta-G solvation = -4016.772472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.19525 -39.88800 -38.70273 -36.89431 -36.41465 -35.13211 -34.09400 -32.27394 -31.81000 -30.25954 -28.36274 -27.88716 -26.60742 -25.34032 -23.75444 -22.33165 -22.13414 -21.32658 -20.07859 -19.71813 -18.25932 -17.82103 -17.29933 -17.07414 -16.39355 -16.23944 -15.63101 -15.23821 -14.90166 -14.54360 -14.40003 -14.19786 -14.02570 -13.90132 -13.65535 -13.59127 -13.43149 -13.15061 -12.93388 -12.56815 -12.53838 -12.18052 -12.02251 -11.79415 -11.76194 -11.65133 -11.59636 -11.55289 -11.09068 -11.07202 -10.78817 -10.44635 -10.24295 -9.81388 -9.75163 -9.24013 -9.04860 -8.74690 -8.26212 -7.00801 -6.48012 -4.05663 1.96614 2.15367 2.25306 2.56031 2.65176 3.09493 3.13126 3.13926 3.18761 3.86293 3.94796 3.97955 4.39240 4.47351 4.53957 4.57607 4.61637 4.82263 4.87310 5.02423 5.06375 5.10076 5.18822 5.21530 5.21712 5.35959 5.38245 5.56049 5.61969 5.65557 5.69195 5.71849 5.86208 6.06651 6.11495 6.18270 6.27065 6.66301 6.73822 6.79340 6.94003 7.02773 7.25466 7.39300 7.55930 7.71514 7.82551 7.97013 8.19592 8.97778 9.66514 10.69802 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.002104 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.530200 B =13303.874871 C =14197.319397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.619 5.619 5 C 0.117 3.883 6 C -0.122 4.122 7 H 0.119 0.881 8 C 0.517 3.483 9 O -0.520 6.520 10 N -0.654 5.654 11 C 0.028 3.972 12 C -0.090 4.090 13 C -0.179 4.179 14 C 0.148 3.852 15 O -0.176 6.176 16 C -0.390 4.390 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.222 4.222 25 C -0.062 4.062 26 C -0.146 4.146 27 C 0.521 3.479 28 O -0.531 6.531 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.403 0.597 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.270 0.730 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.000 11.515 8.826 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C 0.005 3.995 4 N -0.353 5.353 5 C -0.006 4.006 6 C -0.144 4.144 7 H 0.137 0.863 8 C 0.302 3.698 9 O -0.396 6.396 10 N -0.298 5.298 11 C -0.064 4.064 12 C -0.110 4.110 13 C -0.198 4.198 14 C 0.093 3.907 15 O -0.079 6.079 16 C -0.467 4.467 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.242 4.242 25 C -0.082 4.082 26 C -0.186 4.186 27 C 0.308 3.692 28 O -0.407 6.407 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.238 0.762 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.080 0.920 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.130 0.870 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.126 10.729 8.807 24.448 hybrid contribution 0.063 0.164 -0.681 0.704 sum -20.063 10.893 8.125 24.232 Atomic orbital electron populations 1.21689 0.94896 1.02187 1.01912 1.21933 0.96349 0.97006 1.02971 1.21469 0.77480 0.97321 1.03215 1.48345 1.06403 1.73328 1.07229 1.21999 0.87679 1.04127 0.86842 1.22222 0.94596 1.02342 0.95252 0.86329 1.20050 0.83119 0.82528 0.84066 1.90738 1.81710 1.36426 1.30680 1.43130 1.04828 1.39621 1.42180 1.17229 0.91399 1.05266 0.92499 1.20358 0.93582 0.98915 0.98175 1.20004 1.01125 1.05248 0.93459 1.19427 0.88889 0.90171 0.92172 1.83975 1.40650 1.59651 1.23599 1.21389 1.04885 1.39324 0.81054 0.88921 1.25300 0.94559 0.96339 1.00370 1.70054 1.06564 1.36429 1.36574 0.85638 0.78756 0.78488 0.80519 1.19035 1.20126 1.20121 1.21111 0.95350 1.06065 1.01633 1.20830 0.98135 0.97079 0.92186 1.22377 0.95624 1.05695 0.94895 1.20767 0.88897 0.75108 0.84423 1.90735 1.78540 1.50402 1.21025 0.92510 0.92514 0.92288 0.91431 0.91513 0.89938 0.90180 0.89604 0.88799 0.76228 0.86663 0.86018 0.92033 0.85177 0.85722 0.87048 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.14 -1.09 6.26 -26.73 -0.17 -1.25 16 3 C 0.13 0.93 5.93 -4.04 -0.02 0.91 16 4 N -0.62 -5.41 2.93 -172.39 -0.51 -5.92 16 5 C 0.12 0.92 6.69 -3.12 -0.02 0.90 16 6 C -0.12 -0.91 3.54 -90.14 -0.32 -1.23 16 7 H 0.12 0.58 8.14 -51.92 -0.42 0.16 16 8 C 0.52 5.98 6.90 -10.99 -0.08 5.90 16 9 O -0.52 -8.16 12.98 5.55 0.07 -8.08 16 10 N -0.65 -7.55 5.33 -9.82 -0.05 -7.61 16 11 C 0.03 0.46 6.30 -83.63 -0.53 -0.07 16 12 C -0.09 -1.47 9.96 -39.41 -0.39 -1.87 16 13 C -0.18 -3.58 9.98 -39.42 -0.39 -3.97 16 14 C 0.15 3.48 6.65 -39.08 -0.26 3.22 16 15 O -0.18 -4.92 9.75 0.00 0.00 -4.92 16 16 C -0.39 -10.78 9.48 30.88 0.29 -10.49 16 17 H 0.09 2.39 5.20 -52.48 -0.27 2.11 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 20 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.22 -4.83 9.16 -39.42 -0.36 -5.19 16 25 C -0.06 -1.18 8.69 -39.42 -0.34 -1.52 16 26 C -0.15 -1.13 6.41 -26.71 -0.17 -1.30 16 27 C 0.52 5.51 8.02 -10.83 -0.09 5.42 16 28 O -0.53 -7.58 17.60 5.56 0.10 -7.48 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.92 7.00 -51.93 -0.36 0.56 16 38 H 0.40 3.14 8.82 -40.82 -0.36 2.78 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.13 2.87 5.63 -52.49 -0.30 2.57 16 43 H 0.12 2.30 6.23 -52.49 -0.33 1.97 16 44 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16 45 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -34.53 378.92 -7.75 -42.28 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.23 Total: 4.96 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.58 Total: -10.09 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.20 Total: -37.73 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.17 Total: -20.49 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.53 -7.75 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771734045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.202 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds