Wall clock time and date at job start Tue Mar 31 2020 17:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 N 1.46504 * 109.46843 * 180.02562 * 3 2 1 5 5 C 1.46757 * 124.34927 * 90.00311 * 4 3 2 6 6 C 1.54484 * 105.47244 * 163.00662 * 5 4 3 7 7 H 1.09009 * 110.96539 * 267.26153 * 6 5 4 8 8 C 1.50695 * 110.97077 * 143.53500 * 6 5 4 9 9 O 1.21292 * 120.00074 * 3.08770 * 8 6 5 10 10 N 1.34781 * 120.00170 * 183.08535 * 8 6 5 11 11 C 1.39993 * 120.00169 * 175.76062 * 10 8 6 12 12 C 1.38916 * 119.99926 * 214.83684 * 11 10 8 13 13 C 1.38007 * 119.99314 * 179.78971 * 12 11 10 14 14 C 1.38905 * 120.00322 * 0.46995 * 13 12 11 15 15 O 1.35780 * 120.00096 * 179.76300 * 14 13 12 16 16 C 1.34814 * 117.00223 * 185.36033 * 15 14 13 17 17 H 1.08006 * 120.00008 * 354.96628 * 16 15 14 18 18 C 1.38626 * 120.00290 * 174.96879 * 16 15 14 19 19 N 1.31576 * 119.99813 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00297 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46904 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47071 * 119.99755 * 20 18 16 23 23 H 1.48506 * 109.46819 * 239.99580 * 20 18 16 24 24 C 1.38912 * 120.00265 * 359.78385 * 14 13 12 25 25 C 1.38003 * 119.99981 * 359.97438 * 24 14 13 26 26 C 1.54632 * 101.80005 * 25.39347 * 6 5 4 27 27 C 1.34424 * 124.34531 * 270.02449 * 4 3 2 28 28 O 1.21280 * 124.94703 * 0.39989 * 27 4 3 29 29 H 1.08998 * 109.47234 * 300.00219 * 1 2 3 30 30 H 1.09005 * 109.46879 * 59.99484 * 1 2 3 31 31 H 1.08991 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47227 * 240.00317 * 2 1 3 33 33 H 1.08997 * 109.47087 * 120.00373 * 2 1 3 34 34 H 1.09001 * 109.46908 * 60.00122 * 3 2 1 35 35 H 1.08997 * 109.47543 * 300.00094 * 3 2 1 36 36 H 1.08998 * 110.24933 * 44.00729 * 5 4 3 37 37 H 1.09001 * 110.32031 * 282.04075 * 5 4 3 38 38 H 0.97002 * 119.99888 * 355.49245 * 10 8 6 39 39 H 1.07997 * 120.00767 * 0.02562 * 12 11 10 40 40 H 1.08001 * 120.00189 * 180.22771 * 13 12 11 41 41 H 0.96999 * 120.00189 * 179.97438 * 19 18 16 42 42 H 1.07996 * 119.99989 * 180.02562 * 24 14 13 43 43 H 1.07998 * 119.99817 * 179.97438 * 25 24 14 44 44 H 1.09001 * 110.48171 * 93.90273 * 26 6 5 45 45 H 1.08994 * 110.48682 * 216.54245 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4428 -1.2126 6 6 5.7409 1.8778 -0.7500 7 1 5.8672 2.9562 -0.8463 8 6 6.8109 1.1418 -1.5143 9 8 6.5032 0.3739 -2.4013 10 7 8.1099 1.3369 -1.2124 11 6 9.0994 0.5883 -1.8607 12 6 10.2444 0.2070 -1.1727 13 6 11.2177 -0.5347 -1.8108 14 6 11.0570 -0.8916 -3.1435 15 8 12.0169 -1.6172 -3.7726 16 6 11.8528 -1.8352 -5.0928 17 1 10.9486 -1.5095 -5.5856 18 6 12.8444 -2.4776 -5.8179 19 7 13.9461 -2.8740 -5.2176 20 14 12.6172 -2.7790 -7.6474 21 1 11.3020 -2.2408 -8.0781 22 1 13.7016 -2.0983 -8.3996 23 1 12.6674 -4.2383 -7.9185 24 6 9.9145 -0.5057 -3.8330 25 6 8.9388 0.2317 -3.1937 26 6 5.7308 1.4524 0.7366 27 6 4.2639 1.4419 1.1089 28 8 3.8356 1.4343 2.2435 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9379 2.1534 -1.9388 37 1 4.3699 0.4432 -1.6457 38 1 8.3594 1.9988 -0.5486 39 1 10.3711 0.4876 -0.1376 40 1 12.1063 -0.8344 -1.2749 41 1 14.6399 -3.3238 -5.7249 42 1 9.7894 -0.7836 -4.8691 43 1 8.0507 0.5320 -3.7299 44 1 6.1606 0.4573 0.8515 45 1 6.2741 2.1761 1.3442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771734045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:24 Heat of formation + Delta-G solvation = -93.948556 kcal Electronic energy + Delta-G solvation = -27356.684921 eV Core-core repulsion = 23338.894661 eV Total energy + Delta-G solvation = -4017.790260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.06188 -41.06837 -40.20910 -38.25609 -37.43429 -35.81348 -35.38130 -34.16298 -32.55461 -31.83010 -29.66882 -28.71042 -27.48775 -27.05724 -24.72605 -23.82292 -22.77843 -22.66968 -21.13996 -20.47637 -19.92219 -19.19553 -18.44432 -18.10899 -17.67732 -17.07185 -16.49127 -16.39639 -16.22847 -15.82553 -15.53544 -15.47224 -15.34307 -14.89923 -14.85431 -14.69231 -14.54681 -14.37398 -13.98830 -13.73579 -13.55548 -13.27510 -13.19041 -13.08541 -12.78263 -12.72996 -12.52899 -12.45821 -12.35478 -12.22263 -12.10785 -11.68996 -11.41264 -11.19123 -11.01086 -10.73954 -10.49754 -9.81671 -9.76968 -8.60226 -8.46519 -6.13146 0.52614 0.58019 1.35566 1.41466 1.46443 1.53409 1.59259 1.83575 2.17262 2.19532 2.83040 3.13217 3.17929 3.31328 3.53773 3.73206 3.85107 3.98584 4.02053 4.08590 4.14936 4.20824 4.31388 4.49471 4.50660 4.53231 4.61770 4.65112 4.69460 4.76406 4.81003 4.84869 4.94609 5.08992 5.12778 5.14618 5.16281 5.30276 5.36765 5.46782 5.54021 5.61026 5.72462 6.03328 6.03659 6.18522 6.53849 6.98393 7.05930 7.21967 7.78530 8.76405 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.002104 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.530200 B =13303.874871 C =14197.319397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.615 5.615 5 C 0.114 3.886 6 C -0.103 4.103 7 H 0.161 0.839 8 C 0.521 3.479 9 O -0.560 6.560 10 N -0.642 5.642 11 C 0.062 3.938 12 C -0.076 4.076 13 C -0.183 4.183 14 C 0.105 3.895 15 O -0.229 6.229 16 C -0.411 4.411 17 H 0.098 0.902 18 C -0.023 4.023 19 N -0.918 5.918 20 Si 1.017 2.983 21 H -0.254 1.254 22 H -0.267 1.267 23 H -0.269 1.269 24 C -0.231 4.231 25 C -0.073 4.073 26 C -0.138 4.138 27 C 0.511 3.489 28 O -0.576 6.576 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.429 0.571 39 H 0.167 0.833 40 H 0.125 0.875 41 H 0.273 0.727 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.105 0.895 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.216 14.209 9.565 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.001 3.999 4 N -0.348 5.348 5 C -0.008 4.008 6 C -0.124 4.124 7 H 0.179 0.821 8 C 0.308 3.692 9 O -0.438 6.438 10 N -0.289 5.289 11 C -0.031 4.031 12 C -0.096 4.096 13 C -0.203 4.203 14 C 0.055 3.945 15 O -0.136 6.136 16 C -0.487 4.487 17 H 0.116 0.884 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.836 3.164 21 H -0.178 1.178 22 H -0.192 1.192 23 H -0.194 1.194 24 C -0.251 4.251 25 C -0.093 4.093 26 C -0.178 4.178 27 C 0.300 3.700 28 O -0.456 6.456 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.185 0.815 40 H 0.143 0.857 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.149 0.851 44 H 0.123 0.877 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.400 13.486 9.581 27.846 hybrid contribution 0.440 -0.498 -0.650 0.930 sum -21.959 12.987 8.931 27.031 Atomic orbital electron populations 1.21667 0.93514 1.02441 1.02706 1.21885 0.97583 0.96998 1.01482 1.21615 0.76934 0.97178 1.04183 1.48480 1.07014 1.72125 1.07152 1.22067 0.88137 1.03822 0.86806 1.22187 0.92332 1.03908 0.93993 0.82125 1.20735 0.83456 0.81646 0.83323 1.90749 1.82296 1.38076 1.32643 1.43071 1.03990 1.39617 1.42220 1.17347 0.91774 1.02606 0.91420 1.20798 0.91979 0.96645 1.00143 1.20336 1.02378 1.05352 0.92219 1.19977 0.89161 0.91643 0.93751 1.83937 1.42955 1.62796 1.23907 1.21802 1.05448 1.39763 0.81707 0.88430 1.26537 0.94032 0.95908 1.05531 1.70185 1.07953 1.38807 1.38730 0.84556 0.79272 0.78603 0.73957 1.17778 1.19152 1.19382 1.21117 0.95814 1.06870 1.01280 1.20953 0.97591 0.97150 0.93651 1.22395 0.93865 1.06327 0.95252 1.21263 0.90249 0.74417 0.84068 1.90714 1.79482 1.52606 1.22760 0.92363 0.91036 0.92359 0.91795 0.94047 0.90632 0.87476 0.87037 0.90898 0.73212 0.81516 0.85662 0.91842 0.86685 0.85095 0.87692 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.14 -2.01 6.26 30.60 0.19 -1.82 16 3 C 0.12 1.56 5.93 86.38 0.51 2.08 16 4 N -0.62 -9.24 2.93 -817.89 -2.40 -11.63 16 5 C 0.11 1.42 6.69 86.83 0.58 2.00 16 6 C -0.10 -1.04 3.54 -10.48 -0.04 -1.08 16 7 H 0.16 0.46 8.14 -2.38 -0.02 0.44 16 8 C 0.52 9.92 6.90 87.65 0.60 10.53 16 9 O -0.56 -16.16 12.98 -3.07 -0.04 -16.20 16 10 N -0.64 -11.69 5.33 -303.37 -1.62 -13.31 16 11 C 0.06 1.82 6.30 38.16 0.24 2.06 16 12 C -0.08 -2.22 9.96 22.38 0.22 -1.99 16 13 C -0.18 -7.25 9.98 22.37 0.22 -7.03 16 14 C 0.11 5.16 6.65 22.59 0.15 5.31 16 15 O -0.23 -13.69 9.75 -22.91 -0.22 -13.91 16 16 C -0.41 -24.04 9.48 67.91 0.64 -23.40 16 17 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 18 C -0.02 -1.28 5.49 84.82 0.47 -0.82 16 19 N -0.92 -56.15 13.67 21.61 0.30 -55.85 16 20 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 21 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 24 C -0.23 -10.34 9.16 22.38 0.20 -10.13 16 25 C -0.07 -2.70 8.69 22.38 0.19 -2.50 16 26 C -0.14 -1.58 6.41 30.61 0.20 -1.39 16 27 C 0.51 9.66 8.02 87.92 0.71 10.37 16 28 O -0.58 -15.86 17.60 -3.03 -0.05 -15.92 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.10 7.93 -2.39 -0.02 1.09 16 35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 1.28 7.00 -2.39 -0.02 1.26 16 38 H 0.43 3.91 8.82 -92.71 -0.82 3.09 16 39 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.12 5.37 5.63 -2.91 -0.02 5.35 16 43 H 0.13 4.66 6.23 -2.91 -0.02 4.64 16 44 H 0.10 1.42 7.89 -2.39 -0.02 1.40 16 45 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -83.18 378.92 4.01 -79.17 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.21 Total: 21.06 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 5.81 Total: -18.62 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -3.72 Total: -80.80 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.32 Total: -46.03 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -83.18 4.01 -79.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771734045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.776 kcal (2) G-P(sol) polarization free energy of solvation -83.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds