Wall clock time and date at job start Tue Mar 31 2020 17:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 N 1.46499 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.46765 * 124.35280 * 269.72608 * 4 3 2 6 6 C 1.54295 * 105.56531 * 196.88473 * 5 4 3 7 7 H 1.09002 * 110.74869 * 93.00006 * 6 5 4 8 8 C 1.50693 * 111.15153 * 216.69363 * 6 5 4 9 9 O 1.21289 * 120.00165 * 354.03447 * 8 6 5 10 10 N 1.34782 * 120.00487 * 174.03000 * 8 6 5 11 11 C 1.39995 * 120.00208 * 174.79919 * 10 8 6 12 12 C 1.38920 * 120.00200 * 326.12105 * 11 10 8 13 13 C 1.37998 * 119.99740 * 179.79418 * 12 11 10 14 14 C 1.38908 * 120.00219 * 0.45729 * 13 12 11 15 15 O 1.35777 * 119.99839 * 179.76862 * 14 13 12 16 16 C 1.34813 * 116.99849 * 185.94076 * 15 14 13 17 17 H 1.08001 * 120.00032 * 5.40783 * 16 15 14 18 18 C 1.38627 * 120.00053 * 185.40208 * 16 15 14 19 19 N 1.31581 * 120.00082 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00310 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46757 * 59.99950 * 20 18 16 22 22 H 1.48498 * 109.47310 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46821 * 300.00096 * 20 18 16 24 24 C 1.38914 * 120.00154 * 359.79651 * 14 13 12 25 25 C 1.38007 * 119.99867 * 359.97183 * 24 14 13 26 26 C 1.54632 * 101.84759 * 334.93446 * 6 5 4 27 27 C 1.34426 * 124.34897 * 90.02377 * 4 3 2 28 28 O 1.21281 * 124.94063 * 359.61085 * 27 4 3 29 29 H 1.09003 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47740 * 59.99860 * 1 2 3 31 31 H 1.09004 * 109.47205 * 300.00134 * 1 2 3 32 32 H 1.08994 * 109.47316 * 119.99810 * 2 1 3 33 33 H 1.08999 * 109.46612 * 240.00269 * 2 1 3 34 34 H 1.09004 * 109.46898 * 300.00007 * 3 2 1 35 35 H 1.09004 * 109.47340 * 59.99948 * 3 2 1 36 36 H 1.08998 * 110.24392 * 316.01628 * 5 4 3 37 37 H 1.08995 * 110.24122 * 78.01022 * 5 4 3 38 38 H 0.97000 * 119.99868 * 354.80314 * 10 8 6 39 39 H 1.08005 * 119.99650 * 0.02562 * 12 11 10 40 40 H 1.08000 * 119.99655 * 180.22973 * 13 12 11 41 41 H 0.96994 * 119.99846 * 179.97438 * 19 18 16 42 42 H 1.07991 * 119.99648 * 179.97438 * 24 14 13 43 43 H 1.07999 * 119.99518 * 179.97438 * 25 24 14 44 44 H 1.09002 * 110.48893 * 265.90925 * 26 6 5 45 45 H 1.08998 * 110.49213 * 143.25748 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3336 1.4482 1.2107 6 6 5.7412 1.8778 0.7473 7 1 5.8672 2.9562 0.8440 8 6 6.8128 1.1421 1.5098 9 8 6.5102 0.4159 2.4329 10 7 8.1075 1.2911 1.1660 11 6 9.1103 0.6954 1.9402 12 6 8.9498 0.5799 3.3153 13 6 9.9365 -0.0112 4.0778 14 6 11.0944 -0.4820 3.4717 15 8 12.0672 -1.0593 4.2227 16 6 13.2149 -1.3828 3.5938 17 1 13.3625 -1.1022 2.5613 18 6 14.2057 -2.0754 4.2723 19 7 14.0257 -2.4175 5.5300 20 14 15.7963 -2.5231 3.4011 21 1 16.4747 -1.2844 2.9420 22 1 16.6847 -3.2562 4.3383 23 1 15.4937 -3.3849 2.2302 24 6 11.2572 -0.3617 2.0974 25 6 10.2684 0.2250 1.3342 26 6 5.7295 1.4531 -0.7395 27 6 4.2629 1.4432 -1.1108 28 8 3.8336 1.4371 -2.2450 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6765 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9392 2.1618 1.9341 37 1 4.3712 0.4499 1.6465 38 1 8.3445 1.8110 0.3822 39 1 8.0512 0.9493 3.7870 40 1 9.8101 -0.1043 5.1464 41 1 14.7188 -2.9025 6.0046 42 1 12.1575 -0.7274 1.6264 43 1 10.3952 0.3188 0.2658 44 1 6.1590 0.4580 -0.8554 45 1 6.2720 2.1771 -1.3474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771734052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:30 Heat of formation + Delta-G solvation = -71.550038 kcal Electronic energy + Delta-G solvation = -27270.673048 eV Core-core repulsion = 23253.854061 eV Total energy + Delta-G solvation = -4016.818987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.21035 -39.89133 -38.71458 -36.90217 -36.41778 -35.14869 -34.10359 -32.28102 -31.81735 -30.28745 -28.33920 -27.89779 -26.60391 -25.40525 -23.72828 -22.32045 -22.14299 -21.35204 -20.12414 -19.72561 -18.22194 -17.75338 -17.34122 -17.10956 -16.45215 -16.16707 -15.65991 -15.22368 -14.90684 -14.62372 -14.46063 -14.21852 -14.03249 -13.91933 -13.81288 -13.58702 -13.30441 -13.06890 -12.83490 -12.56068 -12.54276 -12.19905 -12.02861 -11.91241 -11.76607 -11.66343 -11.61025 -11.57241 -11.09842 -11.07691 -10.74877 -10.50295 -10.25888 -9.87812 -9.70560 -9.31617 -9.06261 -8.75880 -8.27406 -6.99920 -6.48274 -4.06510 1.95138 2.13382 2.24057 2.54946 2.67991 3.09454 3.11018 3.13522 3.15026 3.85260 3.93574 3.95935 4.38477 4.46653 4.53454 4.56808 4.60737 4.82552 4.86634 5.01615 5.06682 5.09060 5.17431 5.20819 5.25818 5.34152 5.37544 5.49377 5.55076 5.64773 5.70608 5.71039 5.85398 6.06213 6.14796 6.17166 6.19349 6.72153 6.72891 6.77762 6.89518 7.07585 7.16217 7.34687 7.57230 7.70487 7.81385 7.95645 8.18693 8.96766 9.66330 10.69389 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.001942 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.530109 B =14411.679652 C =14763.754258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.619 5.619 5 C 0.117 3.883 6 C -0.122 4.122 7 H 0.120 0.880 8 C 0.517 3.483 9 O -0.519 6.519 10 N -0.654 5.654 11 C 0.032 3.968 12 C -0.066 4.066 13 C -0.178 4.178 14 C 0.147 3.853 15 O -0.175 6.175 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.219 4.219 25 C -0.088 4.088 26 C -0.148 4.148 27 C 0.521 3.479 28 O -0.530 6.530 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.403 0.597 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.271 0.729 42 H 0.132 0.868 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.589 10.062 -10.683 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.353 5.353 5 C -0.006 4.006 6 C -0.144 4.144 7 H 0.138 0.862 8 C 0.303 3.697 9 O -0.395 6.395 10 N -0.299 5.299 11 C -0.060 4.060 12 C -0.086 4.086 13 C -0.198 4.198 14 C 0.093 3.907 15 O -0.078 6.078 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.239 4.239 25 C -0.108 4.108 26 C -0.188 4.188 27 C 0.308 3.692 28 O -0.407 6.407 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.149 0.851 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.987 9.370 -10.171 24.305 hybrid contribution 0.996 -0.014 -0.832 1.298 sum -18.992 9.356 -11.004 23.860 Atomic orbital electron populations 1.21689 0.94886 1.02186 1.01924 1.21930 0.96357 0.97001 1.02954 1.21471 0.77463 0.97325 1.03235 1.48350 1.06417 1.73312 1.07224 1.21957 0.87692 1.04110 0.86857 1.22200 0.94602 1.02439 0.95173 0.86180 1.20035 0.83074 0.81933 0.84694 1.90752 1.81669 1.37304 1.29757 1.43175 1.04757 1.52153 1.29778 1.17206 0.90651 1.07715 0.90456 1.20568 0.98015 0.98503 0.91483 1.20121 0.93594 1.06162 0.99928 1.19434 0.89228 0.91934 0.90080 1.84004 1.21674 1.66583 1.35514 1.21262 0.90470 1.37321 0.97795 0.89110 1.25300 0.99326 0.96009 0.95893 1.70036 1.34415 1.36154 1.08897 0.85780 0.79926 0.78989 0.78733 1.19482 1.20263 1.19496 1.20987 1.01381 1.07802 0.93738 1.20476 0.93433 0.98508 0.98383 1.22394 0.95740 1.05651 0.95051 1.20742 0.88888 0.75132 0.84425 1.90737 1.78498 1.50399 1.21063 0.92291 0.92510 0.92501 0.91429 0.91529 0.89947 0.90150 0.89527 0.88900 0.76240 0.85829 0.86083 0.91901 0.85072 0.87088 0.87058 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.14 -1.06 6.26 -26.73 -0.17 -1.23 16 3 C 0.13 0.92 5.93 -4.04 -0.02 0.90 16 4 N -0.62 -5.33 2.93 -172.53 -0.51 -5.84 16 5 C 0.12 0.91 6.68 -3.22 -0.02 0.89 16 6 C -0.12 -0.91 3.53 -90.24 -0.32 -1.23 16 7 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 8 C 0.52 5.95 6.81 -10.99 -0.07 5.88 16 9 O -0.52 -8.09 13.29 5.55 0.07 -8.02 16 10 N -0.65 -7.61 5.30 -9.83 -0.05 -7.67 16 11 C 0.03 0.52 6.27 -83.63 -0.52 -0.01 16 12 C -0.07 -1.21 8.65 -39.42 -0.34 -1.55 16 13 C -0.18 -3.76 9.98 -39.42 -0.39 -4.15 16 14 C 0.15 3.48 6.65 -39.08 -0.26 3.22 16 15 O -0.17 -4.89 9.76 0.01 0.00 -4.89 16 16 C -0.39 -10.70 9.44 30.88 0.29 -10.41 16 17 H 0.09 2.26 5.29 -52.49 -0.28 1.98 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 20 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.22 -4.53 9.13 -39.42 -0.36 -4.89 16 25 C -0.09 -1.49 9.96 -39.42 -0.39 -1.88 16 26 C -0.15 -1.12 6.31 -26.74 -0.17 -1.29 16 27 C 0.52 5.43 8.02 -10.86 -0.09 5.34 16 28 O -0.53 -7.50 17.59 5.56 0.10 -7.40 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.89 7.05 -51.93 -0.37 0.53 16 38 H 0.40 3.22 8.75 -40.82 -0.36 2.86 16 39 H 0.12 2.16 6.45 -52.48 -0.34 1.82 16 40 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 41 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.13 2.69 5.71 -52.49 -0.30 2.39 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.11 0.90 7.89 -51.93 -0.41 0.49 16 45 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -34.37 379.21 -7.75 -42.12 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.25 Total: 4.99 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.57 Total: -9.92 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.20 Total: -37.64 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.17 Total: -20.31 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.37 -7.75 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771734052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.432 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds