Wall clock time and date at job start Tue Mar 31 2020 17:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 N 1.46499 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.46765 * 124.35280 * 269.72608 * 4 3 2 6 6 C 1.54295 * 105.56531 * 196.88473 * 5 4 3 7 7 H 1.09002 * 110.74869 * 93.00006 * 6 5 4 8 8 C 1.50693 * 111.15153 * 216.69363 * 6 5 4 9 9 O 1.21289 * 120.00165 * 354.03447 * 8 6 5 10 10 N 1.34782 * 120.00487 * 174.03000 * 8 6 5 11 11 C 1.39995 * 120.00208 * 174.79919 * 10 8 6 12 12 C 1.38920 * 120.00200 * 326.12105 * 11 10 8 13 13 C 1.37998 * 119.99740 * 179.79418 * 12 11 10 14 14 C 1.38908 * 120.00219 * 0.45729 * 13 12 11 15 15 O 1.35777 * 119.99839 * 179.76862 * 14 13 12 16 16 C 1.34813 * 116.99849 * 185.94076 * 15 14 13 17 17 H 1.08001 * 120.00032 * 5.40783 * 16 15 14 18 18 C 1.38627 * 120.00053 * 185.40208 * 16 15 14 19 19 N 1.31581 * 120.00082 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00310 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46757 * 59.99950 * 20 18 16 22 22 H 1.48498 * 109.47310 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46821 * 300.00096 * 20 18 16 24 24 C 1.38914 * 120.00154 * 359.79651 * 14 13 12 25 25 C 1.38007 * 119.99867 * 359.97183 * 24 14 13 26 26 C 1.54632 * 101.84759 * 334.93446 * 6 5 4 27 27 C 1.34426 * 124.34897 * 90.02377 * 4 3 2 28 28 O 1.21281 * 124.94063 * 359.61085 * 27 4 3 29 29 H 1.09003 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47740 * 59.99860 * 1 2 3 31 31 H 1.09004 * 109.47205 * 300.00134 * 1 2 3 32 32 H 1.08994 * 109.47316 * 119.99810 * 2 1 3 33 33 H 1.08999 * 109.46612 * 240.00269 * 2 1 3 34 34 H 1.09004 * 109.46898 * 300.00007 * 3 2 1 35 35 H 1.09004 * 109.47340 * 59.99948 * 3 2 1 36 36 H 1.08998 * 110.24392 * 316.01628 * 5 4 3 37 37 H 1.08995 * 110.24122 * 78.01022 * 5 4 3 38 38 H 0.97000 * 119.99868 * 354.80314 * 10 8 6 39 39 H 1.08005 * 119.99650 * 0.02562 * 12 11 10 40 40 H 1.08000 * 119.99655 * 180.22973 * 13 12 11 41 41 H 0.96994 * 119.99846 * 179.97438 * 19 18 16 42 42 H 1.07991 * 119.99648 * 179.97438 * 24 14 13 43 43 H 1.07999 * 119.99518 * 179.97438 * 25 24 14 44 44 H 1.09002 * 110.48893 * 265.90925 * 26 6 5 45 45 H 1.08998 * 110.49213 * 143.25748 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3336 1.4482 1.2107 6 6 5.7412 1.8778 0.7473 7 1 5.8672 2.9562 0.8440 8 6 6.8128 1.1421 1.5098 9 8 6.5102 0.4159 2.4329 10 7 8.1075 1.2911 1.1660 11 6 9.1103 0.6954 1.9402 12 6 8.9498 0.5799 3.3153 13 6 9.9365 -0.0112 4.0778 14 6 11.0944 -0.4820 3.4717 15 8 12.0672 -1.0593 4.2227 16 6 13.2149 -1.3828 3.5938 17 1 13.3625 -1.1022 2.5613 18 6 14.2057 -2.0754 4.2723 19 7 14.0257 -2.4175 5.5300 20 14 15.7963 -2.5231 3.4011 21 1 16.4747 -1.2844 2.9420 22 1 16.6847 -3.2562 4.3383 23 1 15.4937 -3.3849 2.2302 24 6 11.2572 -0.3617 2.0974 25 6 10.2684 0.2250 1.3342 26 6 5.7295 1.4531 -0.7395 27 6 4.2629 1.4432 -1.1108 28 8 3.8336 1.4371 -2.2450 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6765 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9392 2.1618 1.9341 37 1 4.3712 0.4499 1.6465 38 1 8.3445 1.8110 0.3822 39 1 8.0512 0.9493 3.7870 40 1 9.8101 -0.1043 5.1464 41 1 14.7188 -2.9025 6.0046 42 1 12.1575 -0.7274 1.6264 43 1 10.3952 0.3188 0.2658 44 1 6.1590 0.4580 -0.8554 45 1 6.2720 2.1771 -1.3474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771734052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:29 Heat of formation + Delta-G solvation = -94.771838 kcal Electronic energy + Delta-G solvation = -27271.680021 eV Core-core repulsion = 23253.854061 eV Total energy + Delta-G solvation = -4017.825960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.06777 -41.06718 -40.21462 -38.25423 -37.43441 -35.82421 -35.38487 -34.14596 -32.54888 -31.85467 -29.62925 -28.71660 -27.49747 -27.07075 -24.68402 -23.83585 -22.76582 -22.67923 -21.23215 -20.46107 -19.85823 -18.95657 -18.75223 -17.96766 -17.72402 -17.04042 -16.49141 -16.35221 -16.26377 -15.93241 -15.58582 -15.46363 -15.26075 -15.03463 -14.82689 -14.59677 -14.48680 -14.24540 -14.03439 -13.74875 -13.54267 -13.27790 -13.24247 -13.08310 -12.77347 -12.70653 -12.53940 -12.43496 -12.34045 -12.22128 -12.13934 -11.68641 -11.38161 -11.20931 -11.00689 -10.76354 -10.51561 -9.82577 -9.77176 -8.58648 -8.44259 -6.11395 0.52666 0.55884 1.37704 1.45716 1.47300 1.53931 1.61244 1.82924 2.17544 2.20846 2.84476 3.13867 3.18764 3.30208 3.53732 3.71955 3.85457 3.98866 4.02271 4.06704 4.14294 4.19407 4.31716 4.49536 4.51763 4.53086 4.62211 4.64153 4.67063 4.77306 4.79839 4.85202 4.94589 5.08372 5.13036 5.14963 5.20056 5.30578 5.32496 5.47169 5.54152 5.58317 5.70594 6.03826 6.03905 6.17981 6.53004 7.00106 7.05987 7.20642 7.81325 8.78811 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.001942 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.530109 B =14411.679652 C =14763.754258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.122 3.878 4 N -0.616 5.616 5 C 0.115 3.885 6 C -0.103 4.103 7 H 0.160 0.840 8 C 0.522 3.478 9 O -0.559 6.559 10 N -0.644 5.644 11 C 0.065 3.935 12 C -0.070 4.070 13 C -0.190 4.190 14 C 0.106 3.894 15 O -0.232 6.232 16 C -0.411 4.411 17 H 0.106 0.894 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.257 1.257 24 C -0.222 4.222 25 C -0.080 4.080 26 C -0.141 4.141 27 C 0.511 3.489 28 O -0.575 6.575 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.427 0.573 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.272 0.728 42 H 0.129 0.871 43 H 0.159 0.841 44 H 0.108 0.892 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.758 12.247 -13.349 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.001 3.999 4 N -0.348 5.348 5 C -0.008 4.008 6 C -0.125 4.125 7 H 0.177 0.823 8 C 0.309 3.691 9 O -0.436 6.436 10 N -0.291 5.291 11 C -0.029 4.029 12 C -0.090 4.090 13 C -0.210 4.210 14 C 0.055 3.945 15 O -0.139 6.139 16 C -0.487 4.487 17 H 0.123 0.877 18 C -0.223 4.223 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.181 1.181 24 C -0.242 4.242 25 C -0.100 4.100 26 C -0.181 4.181 27 C 0.300 3.700 28 O -0.456 6.456 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.267 0.733 39 H 0.153 0.847 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.147 0.853 43 H 0.176 0.824 44 H 0.126 0.874 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.219 11.612 -12.880 27.404 hybrid contribution 0.941 -0.538 -0.119 1.091 sum -20.278 11.074 -12.999 26.510 Atomic orbital electron populations 1.21668 0.93537 1.02445 1.02689 1.21880 0.97560 0.96962 1.01514 1.21614 0.76936 0.97216 1.04160 1.48485 1.07018 1.72133 1.07152 1.22023 0.88098 1.03848 0.86805 1.22157 0.92396 1.03834 0.94094 0.82252 1.20710 0.83371 0.80971 0.83999 1.90765 1.82263 1.38892 1.31706 1.43120 1.03920 1.52006 1.30013 1.17318 0.91065 1.04436 0.90053 1.20731 0.97493 0.98177 0.92603 1.20271 0.93898 1.06745 1.00095 1.19919 0.89593 0.93359 0.91634 1.83965 1.22993 1.69548 1.37381 1.21798 0.90996 1.37417 0.98507 0.87691 1.26613 1.03234 0.95768 0.96657 1.70198 1.36076 1.38660 1.11096 0.84639 0.74752 0.79188 0.77598 1.17949 1.20010 1.18115 1.21140 1.02391 1.07903 0.92745 1.20850 0.92158 0.96627 1.00360 1.22418 0.93957 1.06441 0.95247 1.21244 0.90253 0.74429 0.84058 1.90716 1.79444 1.52604 1.22788 0.92336 0.92390 0.91058 0.91747 0.94004 0.90673 0.87504 0.87073 0.90862 0.73348 0.84703 0.87020 0.91938 0.85300 0.82392 0.87402 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.14 -1.96 6.26 30.59 0.19 -1.77 16 3 C 0.12 1.54 5.93 86.38 0.51 2.05 16 4 N -0.62 -9.08 2.93 -818.34 -2.40 -11.48 16 5 C 0.12 1.41 6.68 86.77 0.58 1.98 16 6 C -0.10 -1.05 3.53 -10.55 -0.04 -1.08 16 7 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 8 C 0.52 9.88 6.81 87.65 0.60 10.48 16 9 O -0.56 -15.94 13.29 -3.06 -0.04 -15.98 16 10 N -0.64 -11.86 5.30 -303.38 -1.61 -13.46 16 11 C 0.06 1.90 6.27 38.16 0.24 2.14 16 12 C -0.07 -2.48 8.65 22.38 0.19 -2.29 16 13 C -0.19 -8.27 9.98 22.37 0.22 -8.05 16 14 C 0.11 5.16 6.65 22.59 0.15 5.31 16 15 O -0.23 -13.84 9.76 -22.87 -0.22 -14.06 16 16 C -0.41 -23.42 9.44 67.91 0.64 -22.78 16 17 H 0.11 5.36 5.29 -2.91 -0.02 5.34 16 18 C -0.03 -1.43 5.49 84.82 0.47 -0.96 16 19 N -0.92 -56.45 13.67 21.61 0.30 -56.16 16 20 Si 1.02 42.03 29.55 68.60 2.03 44.05 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 22 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 C -0.22 -9.04 9.13 22.38 0.20 -8.84 16 25 C -0.08 -2.43 9.96 22.38 0.22 -2.21 16 26 C -0.14 -1.54 6.31 30.59 0.19 -1.35 16 27 C 0.51 9.48 8.02 87.90 0.71 10.19 16 28 O -0.58 -15.66 17.59 -3.03 -0.05 -15.71 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 1.09 7.93 -2.38 -0.02 1.07 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 1.25 7.05 -2.39 -0.02 1.23 16 38 H 0.43 4.16 8.75 -92.71 -0.81 3.35 16 39 H 0.14 4.49 6.45 -2.91 -0.02 4.47 16 40 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.13 5.24 5.71 -2.92 -0.02 5.23 16 43 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 44 H 0.11 1.34 7.89 -2.39 -0.02 1.32 16 45 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -82.41 379.21 4.00 -78.41 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.21 Total: 22.35 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.79 Total: -17.95 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -3.71 Total: -81.10 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.32 Total: -45.76 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -82.41 4.00 -78.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771734052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.361 kcal (2) G-P(sol) polarization free energy of solvation -82.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds