Wall clock time and date at job start Tue Mar 31 2020 17:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.51089 * 2 1 4 4 C 1.53292 * 109.51084 * 120.10351 * 2 1 3 5 5 N 1.47156 * 108.38561 * 67.67264 * 4 2 1 6 6 C 1.34770 * 120.98242 * 230.50967 * 5 4 2 7 7 O 1.21591 * 120.00050 * 5.89411 * 6 5 4 8 8 C 1.47595 * 120.00287 * 185.89535 * 6 5 4 9 9 C 1.39780 * 120.06645 * 207.24348 * 8 6 5 10 10 C 1.37631 * 119.93719 * 180.02562 * 9 8 6 11 11 C 1.39255 * 120.06283 * 359.97438 * 10 9 8 12 12 N 1.39097 * 119.93460 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00511 * 326.41290 * 12 11 10 14 14 O 1.21727 * 119.99487 * 354.63636 * 13 12 11 15 15 C 1.46192 * 120.00183 * 174.63435 * 13 12 11 16 16 H 1.08002 * 120.00010 * 6.13755 * 15 13 12 17 17 C 1.40129 * 119.99746 * 185.86129 * 15 13 12 18 18 N 1.30629 * 120.00002 * 354.02979 * 17 15 13 19 19 Si 1.86799 * 119.99608 * 174.03522 * 17 15 13 20 20 H 1.48493 * 109.47395 * 94.97987 * 19 17 15 21 21 H 1.48505 * 109.46825 * 214.97940 * 19 17 15 22 22 H 1.48502 * 109.47408 * 334.97475 * 19 17 15 23 23 C 1.39254 * 120.12650 * 0.25989 * 11 10 9 24 24 C 1.37628 * 120.06044 * 359.48067 * 23 11 10 25 25 C 1.47154 * 118.03273 * 50.78674 * 5 4 2 26 26 C 1.53709 * 108.16160 * 309.15359 * 25 5 4 27 27 H 1.08996 * 109.66052 * 292.57659 * 26 25 5 28 28 C 1.53004 * 109.48620 * 172.39982 * 26 25 5 29 29 O 1.42962 * 109.14600 * 52.54519 * 26 25 5 30 30 H 1.08991 * 109.47170 * 299.89731 * 1 2 3 31 31 H 1.08999 * 109.46664 * 59.89747 * 1 2 3 32 32 H 1.09003 * 109.46804 * 179.89450 * 1 2 3 33 33 H 1.09000 * 109.68441 * 307.94856 * 4 2 1 34 34 H 1.09001 * 109.71281 * 187.41497 * 4 2 1 35 35 H 1.07997 * 120.02593 * 359.97438 * 9 8 6 36 36 H 1.07997 * 119.96433 * 180.02562 * 10 9 8 37 37 H 0.97010 * 119.99688 * 146.40882 * 12 11 10 38 38 H 0.97004 * 119.99797 * 180.02562 * 18 17 15 39 39 H 1.07995 * 119.96889 * 179.74772 * 23 11 10 40 40 H 1.08008 * 120.03482 * 180.23341 * 24 23 11 41 41 H 1.09000 * 109.68255 * 68.93531 * 25 5 4 42 42 H 1.09000 * 109.67562 * 189.49010 * 25 5 4 43 43 H 1.08994 * 109.47008 * 300.36782 * 28 26 25 44 44 H 1.09004 * 109.46776 * 60.36632 * 28 26 25 45 45 H 1.08992 * 109.47565 * 180.36505 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 1.2500 5 7 1.6970 -2.1505 1.1339 6 6 1.0728 -2.7973 2.1380 7 8 0.6905 -2.1804 3.1136 8 6 0.8532 -4.2544 2.0536 9 6 -0.2218 -4.8408 2.7277 10 6 -0.4238 -6.1998 2.6475 11 6 0.4412 -6.9905 1.8954 12 7 0.2349 -8.3638 1.8166 13 6 -0.2717 -9.0309 2.8725 14 8 -0.4572 -8.4510 3.9266 15 6 -0.5983 -10.4507 2.7519 16 1 -0.3427 -10.9890 1.8511 17 6 -1.2378 -11.1146 3.8073 18 7 -1.4373 -10.4980 4.9415 19 14 -1.8048 -12.8815 3.5923 20 1 -0.7627 -13.8026 4.1126 21 1 -3.0693 -13.0903 4.3424 22 1 -2.0333 -13.1561 2.1509 23 6 1.5159 -6.4097 1.2267 24 6 1.7196 -5.0505 1.2990 25 6 2.0593 -2.8508 -0.1086 26 6 1.5416 -2.0212 -1.2945 27 1 0.4517 -2.0293 -1.2997 28 6 2.0634 -2.6197 -2.6025 29 8 2.0086 -0.6762 -1.1653 30 1 -0.3633 0.5122 0.8908 31 1 -0.3632 0.5154 -0.8891 32 1 -0.3633 -1.0277 -0.0019 33 1 1.5698 -0.3039 2.1377 34 1 3.1240 -0.6135 1.3222 35 1 -0.8927 -4.2280 3.3115 36 1 -1.2545 -6.6533 3.1678 37 1 0.4556 -8.8415 1.0017 38 1 -1.8797 -10.9578 5.6722 39 1 2.1875 -7.0258 0.6475 40 1 2.5510 -4.6000 0.7771 41 1 3.1430 -2.9499 -0.1715 42 1 1.5984 -3.8385 -0.1210 43 1 3.1533 -2.6129 -2.5958 44 1 1.7070 -3.6451 -2.7004 45 1 1.7015 -2.0275 -3.4429 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005937237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:00 Heat of formation + Delta-G solvation = -70.842540 kcal Electronic energy + Delta-G solvation = -28525.388995 eV Core-core repulsion = 24508.600687 eV Total energy + Delta-G solvation = -4016.788308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.90273 -39.38197 -38.42442 -36.85863 -34.97212 -33.95477 -33.44665 -32.57617 -30.73950 -30.49784 -29.48457 -27.29910 -26.69677 -26.04700 -23.33186 -22.99238 -22.09824 -20.74723 -19.89535 -19.46554 -17.77961 -17.27848 -16.98782 -16.70208 -16.17656 -15.80453 -15.60743 -15.16927 -15.03098 -14.50963 -14.36376 -14.05682 -13.74087 -13.59678 -13.32444 -13.12330 -12.88231 -12.78488 -12.65108 -12.49919 -12.18510 -12.12658 -12.05446 -11.78375 -11.68266 -11.43566 -11.34269 -11.16548 -10.89084 -10.74605 -10.56171 -10.41458 -10.22744 -9.73048 -9.44826 -9.00040 -8.65171 -8.59852 -7.88830 -7.26817 -6.45428 -4.92402 1.30955 1.79523 2.78188 2.98812 3.04124 3.09150 3.12816 3.41192 3.90311 4.10298 4.34400 4.37594 4.45981 4.51550 4.59164 4.71711 4.80449 4.90857 5.02164 5.09610 5.13388 5.25911 5.26826 5.38695 5.41874 5.49343 5.51479 5.58308 5.63104 5.66722 5.76651 5.83345 5.89928 5.94789 6.07939 6.29556 6.36269 6.53075 6.81422 6.89271 6.90355 7.16070 7.21223 7.32726 7.58835 7.88798 8.02925 8.22233 8.74922 9.05090 10.25143 10.45310 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.002456 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.931905 B =11395.702505 C =12054.778326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 H 0.112 0.888 4 C 0.083 3.917 5 N -0.615 5.615 6 C 0.573 3.427 7 O -0.542 6.542 8 C -0.194 4.194 9 C -0.036 4.036 10 C -0.139 4.139 11 C 0.225 3.775 12 N -0.695 5.695 13 C 0.539 3.461 14 O -0.555 6.555 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.086 3.914 18 N -0.756 5.756 19 Si 0.914 3.086 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.188 4.188 24 C -0.079 4.079 25 C 0.058 3.942 26 C 0.067 3.933 27 H 0.069 0.931 28 C -0.144 4.144 29 O -0.374 6.374 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 14.929 -14.499 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.018 3.982 3 H 0.130 0.870 4 C -0.040 4.040 5 N -0.349 5.349 6 C 0.364 3.636 7 O -0.420 6.420 8 C -0.198 4.198 9 C -0.056 4.056 10 C -0.161 4.161 11 C 0.124 3.876 12 N -0.337 5.337 13 C 0.346 3.654 14 O -0.436 6.436 15 C -0.573 4.573 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.384 5.384 19 Si 0.738 3.262 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.209 4.209 24 C -0.098 4.098 25 C -0.065 4.065 26 C 0.009 3.991 27 H 0.086 0.914 28 C -0.202 4.202 29 O -0.293 6.293 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.095 0.905 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.774 15.617 -13.096 21.184 hybrid contribution -0.164 -1.243 -0.258 1.280 sum 5.610 14.374 -13.354 20.406 Atomic orbital electron populations 1.22363 0.95756 1.03114 1.02741 1.22562 0.94248 0.96434 0.84984 0.87030 1.22272 1.00715 0.81252 0.99726 1.47922 1.60098 1.10309 1.16613 1.18441 0.76107 0.87369 0.81643 1.90743 1.50758 1.68601 1.31921 1.19455 1.01776 0.91774 1.06806 1.21002 0.95373 0.94425 0.94776 1.21330 1.00945 0.92130 1.01649 1.18215 0.91006 0.85319 0.93073 1.44264 1.66644 1.04267 1.18551 1.18461 0.77446 0.88136 0.81382 1.90663 1.55855 1.69753 1.27370 1.20856 1.40621 0.92845 1.02930 0.90840 1.25760 0.94026 0.99701 0.94121 1.69979 1.29494 1.36855 1.02041 0.86246 0.78675 0.81890 0.79409 1.19612 1.20153 1.18652 1.20821 0.98254 0.94946 1.06892 1.21299 0.98456 0.93365 0.96643 1.23362 1.01228 0.98467 0.83419 1.22646 0.98800 0.82537 0.95113 0.91356 1.21738 1.02259 1.00834 0.95327 1.87995 1.72327 1.25509 1.43482 0.91205 0.91796 0.91879 0.88022 0.90891 0.85601 0.83738 0.77046 0.91556 0.85775 0.84966 0.90482 0.86097 0.91573 0.90519 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.81 37.16 0.33 -1.35 16 2 C 0.08 0.68 3.93 -26.58 -0.10 0.58 16 3 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.08 0.87 6.03 -3.53 -0.02 0.85 16 5 N -0.62 -7.52 2.54 -173.22 -0.44 -7.95 16 6 C 0.57 9.07 7.48 -12.45 -0.09 8.97 16 7 O -0.54 -10.27 16.12 5.29 0.09 -10.18 16 8 C -0.19 -3.15 5.53 -104.93 -0.58 -3.73 16 9 C -0.04 -0.66 9.58 -39.23 -0.38 -1.03 16 10 C -0.14 -2.87 8.62 -39.43 -0.34 -3.21 16 11 C 0.23 4.37 6.27 -83.81 -0.53 3.84 16 12 N -0.70 -14.50 5.30 -11.19 -0.06 -14.56 16 13 C 0.54 14.24 7.46 -13.07 -0.10 14.14 16 14 O -0.55 -16.74 12.72 5.16 0.07 -16.68 16 15 C -0.54 -14.02 9.53 -35.68 -0.34 -14.36 16 16 H 0.07 1.73 7.86 -52.49 -0.41 1.31 16 17 C 0.09 2.24 5.50 -17.35 -0.10 2.14 16 18 N -0.76 -21.37 11.85 55.55 0.66 -20.71 16 19 Si 0.91 18.85 29.56 -169.99 -5.03 13.82 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 C -0.19 -2.88 9.94 -39.43 -0.39 -3.27 16 24 C -0.08 -1.10 7.44 -39.23 -0.29 -1.39 16 25 C 0.06 0.56 4.16 -3.32 -0.01 0.55 16 26 C 0.07 0.60 3.03 -26.36 -0.08 0.52 16 27 H 0.07 0.65 6.25 -51.93 -0.32 0.33 16 28 C -0.14 -0.98 9.57 37.16 0.36 -0.63 16 29 O -0.37 -3.74 10.23 -35.23 -0.36 -4.10 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.68 6.11 -51.93 -0.32 0.36 16 33 H 0.10 1.17 7.06 -51.93 -0.37 0.80 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.13 2.25 7.88 -52.49 -0.41 1.84 16 36 H 0.14 3.40 6.42 -52.49 -0.34 3.06 16 37 H 0.40 6.85 8.79 -40.82 -0.36 6.49 16 38 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 39 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 1.43 5.10 -52.48 -0.27 1.17 16 41 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 42 H 0.12 1.18 4.23 -51.93 -0.22 0.96 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -33.81 363.44 -8.21 -42.02 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.94 Total: 10.23 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.67 Total: 2.63 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.16 Total: -43.22 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.21 Total: -30.96 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.81 -8.21 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005937237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.824 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds