Wall clock time and date at job start Tue Mar 31 2020 17:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.51089 * 2 1 4 4 C 1.53292 * 109.51084 * 120.10351 * 2 1 3 5 5 N 1.47156 * 108.38561 * 67.67264 * 4 2 1 6 6 C 1.34770 * 120.98242 * 230.50967 * 5 4 2 7 7 O 1.21591 * 120.00050 * 5.89411 * 6 5 4 8 8 C 1.47595 * 120.00287 * 185.89535 * 6 5 4 9 9 C 1.39780 * 120.06645 * 207.24348 * 8 6 5 10 10 C 1.37631 * 119.93719 * 180.02562 * 9 8 6 11 11 C 1.39255 * 120.06283 * 359.97438 * 10 9 8 12 12 N 1.39097 * 119.93460 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00511 * 326.41290 * 12 11 10 14 14 O 1.21727 * 119.99487 * 354.63636 * 13 12 11 15 15 C 1.46192 * 120.00183 * 174.63435 * 13 12 11 16 16 H 1.08002 * 120.00010 * 6.13755 * 15 13 12 17 17 C 1.40129 * 119.99746 * 185.86129 * 15 13 12 18 18 N 1.30629 * 120.00002 * 354.02979 * 17 15 13 19 19 Si 1.86799 * 119.99608 * 174.03522 * 17 15 13 20 20 H 1.48493 * 109.47395 * 94.97987 * 19 17 15 21 21 H 1.48505 * 109.46825 * 214.97940 * 19 17 15 22 22 H 1.48502 * 109.47408 * 334.97475 * 19 17 15 23 23 C 1.39254 * 120.12650 * 0.25989 * 11 10 9 24 24 C 1.37628 * 120.06044 * 359.48067 * 23 11 10 25 25 C 1.47154 * 118.03273 * 50.78674 * 5 4 2 26 26 C 1.53709 * 108.16160 * 309.15359 * 25 5 4 27 27 H 1.08996 * 109.66052 * 292.57659 * 26 25 5 28 28 C 1.53004 * 109.48620 * 172.39982 * 26 25 5 29 29 O 1.42962 * 109.14600 * 52.54519 * 26 25 5 30 30 H 1.08991 * 109.47170 * 299.89731 * 1 2 3 31 31 H 1.08999 * 109.46664 * 59.89747 * 1 2 3 32 32 H 1.09003 * 109.46804 * 179.89450 * 1 2 3 33 33 H 1.09000 * 109.68441 * 307.94856 * 4 2 1 34 34 H 1.09001 * 109.71281 * 187.41497 * 4 2 1 35 35 H 1.07997 * 120.02593 * 359.97438 * 9 8 6 36 36 H 1.07997 * 119.96433 * 180.02562 * 10 9 8 37 37 H 0.97010 * 119.99688 * 146.40882 * 12 11 10 38 38 H 0.97004 * 119.99797 * 180.02562 * 18 17 15 39 39 H 1.07995 * 119.96889 * 179.74772 * 23 11 10 40 40 H 1.08008 * 120.03482 * 180.23341 * 24 23 11 41 41 H 1.09000 * 109.68255 * 68.93531 * 25 5 4 42 42 H 1.09000 * 109.67562 * 189.49010 * 25 5 4 43 43 H 1.08994 * 109.47008 * 300.36782 * 28 26 25 44 44 H 1.09004 * 109.46776 * 60.36632 * 28 26 25 45 45 H 1.08992 * 109.47565 * 180.36505 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 1.2500 5 7 1.6970 -2.1505 1.1339 6 6 1.0728 -2.7973 2.1380 7 8 0.6905 -2.1804 3.1136 8 6 0.8532 -4.2544 2.0536 9 6 -0.2218 -4.8408 2.7277 10 6 -0.4238 -6.1998 2.6475 11 6 0.4412 -6.9905 1.8954 12 7 0.2349 -8.3638 1.8166 13 6 -0.2717 -9.0309 2.8725 14 8 -0.4572 -8.4510 3.9266 15 6 -0.5983 -10.4507 2.7519 16 1 -0.3427 -10.9890 1.8511 17 6 -1.2378 -11.1146 3.8073 18 7 -1.4373 -10.4980 4.9415 19 14 -1.8048 -12.8815 3.5923 20 1 -0.7627 -13.8026 4.1126 21 1 -3.0693 -13.0903 4.3424 22 1 -2.0333 -13.1561 2.1509 23 6 1.5159 -6.4097 1.2267 24 6 1.7196 -5.0505 1.2990 25 6 2.0593 -2.8508 -0.1086 26 6 1.5416 -2.0212 -1.2945 27 1 0.4517 -2.0293 -1.2997 28 6 2.0634 -2.6197 -2.6025 29 8 2.0086 -0.6762 -1.1653 30 1 -0.3633 0.5122 0.8908 31 1 -0.3632 0.5154 -0.8891 32 1 -0.3633 -1.0277 -0.0019 33 1 1.5698 -0.3039 2.1377 34 1 3.1240 -0.6135 1.3222 35 1 -0.8927 -4.2280 3.3115 36 1 -1.2545 -6.6533 3.1678 37 1 0.4556 -8.8415 1.0017 38 1 -1.8797 -10.9578 5.6722 39 1 2.1875 -7.0258 0.6475 40 1 2.5510 -4.6000 0.7771 41 1 3.1430 -2.9499 -0.1715 42 1 1.5984 -3.8385 -0.1210 43 1 3.1533 -2.6129 -2.5958 44 1 1.7070 -3.6451 -2.7004 45 1 1.7015 -2.0275 -3.4429 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005937237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:59 Heat of formation + Delta-G solvation = -94.268613 kcal Electronic energy + Delta-G solvation = -28526.404825 eV Core-core repulsion = 24508.600687 eV Total energy + Delta-G solvation = -4017.804138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.96747 -40.76551 -39.67233 -38.49811 -36.05881 -35.36194 -34.62007 -34.42191 -32.02018 -31.47853 -30.82366 -28.60643 -27.91145 -27.20839 -24.48415 -24.25218 -23.24039 -22.11532 -21.31572 -20.41711 -19.54486 -18.52332 -18.13452 -17.86383 -17.53586 -17.21148 -16.75589 -16.27150 -16.13229 -15.86493 -15.56060 -15.38878 -15.10736 -14.74673 -14.67037 -14.56781 -14.31534 -13.89568 -13.64157 -13.57314 -13.28447 -13.22180 -13.03543 -12.89212 -12.84313 -12.74919 -12.72621 -12.44834 -12.24168 -12.04101 -12.00694 -11.55387 -11.15938 -11.06994 -10.93665 -10.85189 -10.09092 -9.80017 -9.61432 -8.86066 -8.40250 -6.96828 -0.08856 0.41982 1.39354 1.40461 1.57417 1.67125 1.80973 2.19511 2.35907 2.71722 2.77404 2.91997 3.43525 3.53562 3.62583 3.75151 3.88336 3.93575 4.02607 4.08210 4.16430 4.29576 4.38834 4.40518 4.46140 4.53813 4.63294 4.64012 4.69932 4.78442 4.88159 4.98008 5.00700 5.03542 5.17252 5.19137 5.24273 5.29046 5.37455 5.40205 5.46327 5.68474 5.78966 6.13942 6.18984 6.20855 6.28142 6.75825 7.01630 7.28242 8.30752 8.53669 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.002456 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.931905 B =11395.702505 C =12054.778326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 H 0.137 0.863 4 C 0.079 3.921 5 N -0.605 5.605 6 C 0.569 3.431 7 O -0.583 6.583 8 C -0.189 4.189 9 C -0.047 4.047 10 C -0.163 4.163 11 C 0.196 3.804 12 N -0.686 5.686 13 C 0.526 3.474 14 O -0.606 6.606 15 C -0.561 4.561 16 H 0.098 0.902 17 C 0.028 3.972 18 N -0.814 5.814 19 Si 1.001 2.999 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.244 1.244 23 C -0.165 4.165 24 C -0.058 4.058 25 C 0.051 3.949 26 C 0.067 3.933 27 H 0.059 0.941 28 C -0.140 4.140 29 O -0.379 6.379 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.413 0.587 38 H 0.278 0.722 39 H 0.166 0.834 40 H 0.179 0.821 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.586 14.806 -17.918 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.022 3.978 3 H 0.154 0.846 4 C -0.044 4.044 5 N -0.338 5.338 6 C 0.361 3.639 7 O -0.464 6.464 8 C -0.194 4.194 9 C -0.067 4.067 10 C -0.185 4.185 11 C 0.097 3.903 12 N -0.330 5.330 13 C 0.333 3.667 14 O -0.491 6.491 15 C -0.597 4.597 16 H 0.116 0.884 17 C -0.188 4.188 18 N -0.442 5.442 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.167 1.167 23 C -0.185 4.185 24 C -0.077 4.077 25 C -0.070 4.070 26 C 0.008 3.992 27 H 0.076 0.924 28 C -0.198 4.198 29 O -0.298 6.298 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.250 0.750 38 H 0.088 0.912 39 H 0.183 0.817 40 H 0.196 0.804 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.279 15.534 -16.618 24.207 hybrid contribution -0.869 -0.983 0.718 1.495 sum 7.410 14.551 -15.900 22.792 Atomic orbital electron populations 1.22343 0.96275 1.01937 1.03190 1.22634 0.93785 0.97371 0.83994 0.84551 1.22467 1.01697 0.80102 1.00088 1.47968 1.58305 1.11161 1.16336 1.18366 0.76453 0.87074 0.82039 1.90728 1.52683 1.69168 1.33852 1.19641 1.00975 0.92693 1.06053 1.20903 0.96619 0.93487 0.95696 1.21022 1.01018 0.93271 1.03152 1.18446 0.92644 0.84486 0.94736 1.43712 1.66305 1.04966 1.18020 1.18801 0.77182 0.88857 0.81816 1.90630 1.57896 1.70858 1.29750 1.21427 1.40910 0.93250 1.04104 0.88405 1.27040 0.93418 1.05071 0.93288 1.70153 1.31049 1.39549 1.03487 0.84945 0.78011 0.74844 0.80201 1.18630 1.20030 1.16731 1.21178 0.96582 0.95696 1.05079 1.21752 0.98403 0.92533 0.94967 1.23613 1.02767 0.98379 0.82257 1.22718 0.98418 0.82207 0.95823 0.92351 1.21753 1.02730 1.01430 0.93857 1.88006 1.72351 1.25939 1.43547 0.91428 0.90703 0.93840 0.89453 0.89083 0.86636 0.88241 0.74972 0.91236 0.81690 0.80421 0.87901 0.86010 0.90747 0.89123 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.81 71.98 0.63 -2.46 16 2 C 0.08 1.24 3.93 30.69 0.12 1.36 16 3 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 4 C 0.08 1.49 6.03 86.35 0.52 2.01 16 5 N -0.61 -13.48 2.54 -820.22 -2.08 -15.56 16 6 C 0.57 17.68 7.48 86.71 0.65 18.33 16 7 O -0.58 -22.60 16.12 -4.00 -0.06 -22.67 16 8 C -0.19 -6.03 5.53 -20.06 -0.11 -6.14 16 9 C -0.05 -1.84 9.58 22.50 0.22 -1.62 16 10 C -0.16 -7.20 8.62 22.37 0.19 -7.00 16 11 C 0.20 7.68 6.27 38.48 0.24 7.92 16 12 N -0.69 -28.95 5.30 -307.52 -1.63 -30.58 16 13 C 0.53 28.95 7.46 86.31 0.64 29.59 16 14 O -0.61 -39.01 12.72 -4.44 -0.06 -39.06 16 15 C -0.56 -29.78 9.53 24.80 0.24 -29.55 16 16 H 0.10 4.51 7.86 -2.91 -0.02 4.49 16 17 C 0.03 1.50 5.50 85.33 0.47 1.97 16 18 N -0.81 -48.11 11.85 21.85 0.26 -47.85 16 19 Si 1.00 38.71 29.56 68.60 2.03 40.73 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 21 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.24 -8.64 7.11 99.48 0.71 -7.93 16 23 C -0.16 -4.57 9.94 22.37 0.22 -4.34 16 24 C -0.06 -1.44 7.44 22.50 0.17 -1.27 16 25 C 0.05 0.79 4.16 86.49 0.36 1.15 16 26 C 0.07 0.98 3.03 30.83 0.09 1.07 16 27 H 0.06 0.99 6.25 -2.39 -0.01 0.98 16 28 C -0.14 -1.37 9.57 71.98 0.69 -0.68 16 29 O -0.38 -6.33 10.23 -148.98 -1.52 -7.85 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.91 6.11 -2.39 -0.01 0.90 16 33 H 0.09 1.95 7.06 -2.39 -0.02 1.93 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 4.57 7.88 -2.91 -0.02 4.55 16 36 H 0.10 5.25 6.42 -2.91 -0.02 5.23 16 37 H 0.41 13.91 8.79 -92.70 -0.82 13.09 16 38 H 0.28 14.89 8.29 -92.71 -0.77 14.12 16 39 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 40 H 0.18 2.85 5.10 -2.91 -0.01 2.84 16 41 H 0.10 1.18 7.91 -2.39 -0.02 1.16 16 42 H 0.12 1.86 4.23 -2.39 -0.01 1.85 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -80.22 363.44 2.50 -77.72 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: 0.22 Total: 34.78 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.34 Total: 10.35 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -3.45 Total: -93.99 kcal Atomic # 8 Polarization: -67.94 SS G_CDS: -1.64 Total: -69.59 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.73 kcal Total: -80.22 2.50 -77.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005937237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.552 kcal (2) G-P(sol) polarization free energy of solvation -80.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds