Wall clock time and date at job start Tue Mar 31 2020 17:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.51212 * 2 1 4 4 C 1.53296 * 109.51122 * 239.89783 * 2 1 3 5 5 N 1.47152 * 108.38279 * 187.72337 * 4 2 1 6 6 C 1.34773 * 120.98127 * 230.51396 * 5 4 2 7 7 O 1.21592 * 119.99848 * 5.32285 * 6 5 4 8 8 C 1.47596 * 120.00324 * 185.59945 * 6 5 4 9 9 C 1.39776 * 120.06647 * 211.91057 * 8 6 5 10 10 C 1.37631 * 119.93768 * 179.80850 * 9 8 6 11 11 C 1.39261 * 120.06093 * 0.44865 * 10 9 8 12 12 N 1.39096 * 119.93510 * 179.76385 * 11 10 9 13 13 C 1.34770 * 119.99783 * 215.45079 * 12 11 10 14 14 O 1.21727 * 120.00576 * 355.25233 * 13 12 11 15 15 C 1.46205 * 120.00181 * 175.25442 * 13 12 11 16 16 H 1.08005 * 119.99634 * 359.97438 * 15 13 12 17 17 C 1.40121 * 120.00137 * 180.02562 * 15 13 12 18 18 N 1.30638 * 120.00061 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99855 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47409 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47056 * 119.99948 * 19 17 15 22 22 H 1.48498 * 109.47390 * 239.99861 * 19 17 15 23 23 C 1.39253 * 120.12355 * 359.78765 * 11 10 9 24 24 C 1.37630 * 120.06503 * 359.97438 * 23 11 10 25 25 C 1.47148 * 118.03641 * 50.78861 * 5 4 2 26 26 C 1.53712 * 108.16231 * 309.15542 * 25 5 4 27 27 H 1.09000 * 109.44394 * 172.37421 * 26 25 5 28 28 C 1.52996 * 109.70236 * 292.55090 * 26 25 5 29 29 O 1.42963 * 109.55286 * 120.12499 * 2 1 3 30 30 H 1.09001 * 109.46927 * 180.10484 * 1 2 3 31 31 H 1.08999 * 109.46638 * 300.09909 * 1 2 3 32 32 H 1.08998 * 109.47114 * 60.09905 * 1 2 3 33 33 H 1.09004 * 109.67790 * 67.99913 * 4 2 1 34 34 H 1.08998 * 109.71079 * 307.46564 * 4 2 1 35 35 H 1.08005 * 120.03082 * 0.02562 * 9 8 6 36 36 H 1.07993 * 119.96787 * 180.21297 * 10 9 8 37 37 H 0.97000 * 120.00474 * 35.44923 * 12 11 10 38 38 H 0.97001 * 119.99984 * 179.97438 * 18 17 15 39 39 H 1.08005 * 119.96852 * 179.97438 * 23 11 10 40 40 H 1.07999 * 120.03310 * 179.97438 * 24 23 11 41 41 H 1.08996 * 109.68375 * 68.93518 * 25 5 4 42 42 H 1.09005 * 109.68294 * 189.49246 * 25 5 4 43 43 H 1.08997 * 109.47796 * 179.76481 * 28 26 25 44 44 H 1.09001 * 109.46833 * 299.76606 * 28 26 25 45 45 H 1.09001 * 109.47390 * 59.75949 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2501 5 7 3.5014 -0.8746 -1.1345 6 6 4.3188 -0.5019 -2.1392 7 8 3.8627 0.0546 -3.1193 8 6 5.7667 -0.7747 -2.0524 9 6 6.6809 0.0997 -2.6469 10 6 8.0307 -0.1551 -2.5610 11 6 8.4855 -1.2878 -1.8905 12 7 9.8500 -1.5454 -1.8095 13 6 10.2995 -2.8153 -1.8500 14 8 9.5089 -3.7406 -1.8702 15 6 11.7370 -3.0816 -1.8695 16 1 12.4386 -2.2606 -1.8519 17 6 12.2044 -4.4019 -1.9121 18 7 11.3558 -5.3949 -1.9339 19 14 14.0409 -4.7421 -1.9378 20 1 14.7831 -3.4562 -1.9059 21 1 14.4102 -5.5557 -0.7517 22 1 14.3896 -5.4848 -3.1756 23 6 7.5767 -2.1633 -1.3015 24 6 6.2260 -1.9109 -1.3801 25 6 4.0414 -1.4493 0.1078 26 6 3.4324 -0.6843 1.2939 27 1 3.7110 -1.1774 2.2252 28 6 3.9529 0.7543 1.3018 29 8 2.0085 -0.6761 1.1652 30 1 -0.3633 -1.0277 0.0019 31 1 -0.3632 0.5154 0.8891 32 1 -0.3633 0.5123 -0.8909 33 1 1.8022 -0.1393 -2.1378 34 1 1.5765 -1.7076 -1.3217 35 1 6.3286 0.9764 -3.1702 36 1 8.7376 0.5220 -3.0171 37 1 10.4780 -0.8111 -1.7238 38 1 11.6793 -6.3088 -1.9638 39 1 7.9322 -3.0412 -0.7825 40 1 5.5217 -2.5904 -0.9235 41 1 3.7737 -2.5039 0.1712 42 1 5.1263 -1.3439 0.1198 43 1 3.5157 1.2944 2.1415 44 1 5.0385 0.7474 1.3999 45 1 3.6756 1.2462 0.3694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005937238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:03 Heat of formation + Delta-G solvation = -98.934926 kcal Electronic energy + Delta-G solvation = -28567.321269 eV Core-core repulsion = 24549.314784 eV Total energy + Delta-G solvation = -4018.006485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95672 -40.76307 -39.69378 -38.46775 -36.08162 -35.33305 -34.60842 -34.40237 -32.00115 -31.41304 -30.90755 -28.56479 -28.06220 -27.14518 -24.35238 -24.07590 -23.52604 -22.07451 -21.33944 -20.42793 -19.53942 -18.56965 -18.15541 -17.75220 -17.54687 -17.22607 -16.80155 -16.24691 -16.05866 -15.88177 -15.62589 -15.40954 -15.07920 -14.93781 -14.60065 -14.57292 -14.22619 -13.90214 -13.61927 -13.53707 -13.31518 -13.20683 -13.11342 -12.92039 -12.86141 -12.78178 -12.71652 -12.47206 -12.25989 -12.12449 -11.99833 -11.58061 -11.17968 -11.09464 -10.96913 -10.79459 -10.04653 -9.77548 -9.63538 -8.89332 -8.38617 -6.95931 -0.07067 0.43980 1.38779 1.41154 1.58366 1.65738 1.78578 2.19983 2.35775 2.68702 2.77229 2.90935 3.41547 3.53257 3.57989 3.77260 3.92486 3.96016 4.01131 4.04900 4.06572 4.31161 4.33324 4.38437 4.44862 4.51573 4.61341 4.65651 4.67725 4.76749 4.88048 4.97161 4.98960 5.03059 5.14943 5.21912 5.25218 5.27047 5.32264 5.41307 5.44729 5.70707 5.78539 6.13503 6.15806 6.17816 6.29645 6.77103 6.98216 7.27781 8.31157 8.54414 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024979 B = 0.002477 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.680721 B =11302.967606 C =11671.301054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 H 0.063 0.937 4 C 0.081 3.919 5 N -0.606 5.606 6 C 0.572 3.428 7 O -0.577 6.577 8 C -0.187 4.187 9 C -0.038 4.038 10 C -0.169 4.169 11 C 0.193 3.807 12 N -0.689 5.689 13 C 0.528 3.472 14 O -0.602 6.602 15 C -0.561 4.561 16 H 0.094 0.906 17 C 0.030 3.970 18 N -0.811 5.811 19 Si 0.999 3.001 20 H -0.245 1.245 21 H -0.268 1.268 22 H -0.271 1.271 23 C -0.158 4.158 24 C -0.062 4.062 25 C 0.057 3.943 26 C 0.075 3.925 27 H 0.136 0.864 28 C -0.179 4.179 29 O -0.381 6.381 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.411 0.589 38 H 0.278 0.722 39 H 0.115 0.885 40 H 0.147 0.853 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.352 11.820 6.960 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 H 0.081 0.919 4 C -0.041 4.041 5 N -0.339 5.339 6 C 0.364 3.636 7 O -0.459 6.459 8 C -0.191 4.191 9 C -0.058 4.058 10 C -0.190 4.190 11 C 0.093 3.907 12 N -0.332 5.332 13 C 0.336 3.664 14 O -0.487 6.487 15 C -0.597 4.597 16 H 0.112 0.888 17 C -0.186 4.186 18 N -0.439 5.439 19 Si 0.818 3.182 20 H -0.168 1.168 21 H -0.193 1.193 22 H -0.196 1.196 23 C -0.179 4.179 24 C -0.081 4.081 25 C -0.065 4.065 26 C 0.017 3.983 27 H 0.153 0.847 28 C -0.236 4.236 29 O -0.300 6.300 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.247 0.753 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.165 0.835 41 H 0.108 0.892 42 H 0.130 0.870 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.225 11.139 6.563 19.974 hybrid contribution 1.294 -0.163 -0.358 1.353 sum -13.931 10.975 6.205 18.789 Atomic orbital electron populations 1.21732 0.90463 1.03680 1.03730 1.22526 0.96709 0.95303 0.84008 0.91896 1.22474 0.78937 1.02465 1.00266 1.47995 1.07024 1.62428 1.16415 1.18362 0.86341 0.77028 0.81916 1.90716 1.77600 1.44578 1.32970 1.19654 0.92361 0.99633 1.07457 1.21016 0.91513 0.98280 0.94966 1.21050 0.96251 0.99375 1.02329 1.18437 0.85160 0.94538 0.92534 1.43702 1.04467 1.10003 1.75076 1.18755 0.90604 0.80321 0.76761 1.90591 1.58246 1.44170 1.55685 1.21432 0.90243 0.94301 1.53699 0.88759 1.26971 1.05333 0.95161 0.91172 1.70135 1.38405 1.00472 1.34937 0.84935 0.75058 0.79651 0.78517 1.16818 1.19283 1.19568 1.21261 0.93147 1.00929 1.02583 1.21424 0.94868 0.95782 0.96011 1.23320 1.01488 0.98593 0.83117 1.22808 0.80545 0.96312 0.98642 0.84702 1.22331 1.02501 0.96554 1.02259 1.88006 1.21161 1.77278 1.43541 0.91329 0.90869 0.89510 0.88962 0.89896 0.84008 0.83051 0.75280 0.91203 0.86670 0.83526 0.89181 0.87049 0.90671 0.90798 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.57 71.98 0.69 -1.04 16 2 C 0.07 1.27 3.01 30.70 0.09 1.37 16 3 H 0.06 1.16 6.25 -2.39 -0.01 1.15 16 4 C 0.08 1.68 5.94 86.35 0.51 2.19 16 5 N -0.61 -14.83 2.53 -820.22 -2.08 -16.90 16 6 C 0.57 17.65 7.43 86.71 0.64 18.30 16 7 O -0.58 -21.03 16.22 -4.00 -0.06 -21.09 16 8 C -0.19 -5.90 5.39 -20.06 -0.11 -6.01 16 9 C -0.04 -1.17 9.59 22.50 0.22 -0.95 16 10 C -0.17 -5.35 9.95 22.37 0.22 -5.13 16 11 C 0.19 7.53 6.29 38.48 0.24 7.77 16 12 N -0.69 -29.19 5.29 -307.51 -1.63 -30.82 16 13 C 0.53 28.56 7.57 86.31 0.65 29.22 16 14 O -0.60 -37.27 12.44 -4.44 -0.06 -37.33 16 15 C -0.56 -29.53 9.54 24.80 0.24 -29.29 16 16 H 0.09 4.38 7.85 -2.91 -0.02 4.36 16 17 C 0.03 1.58 5.50 85.33 0.47 2.05 16 18 N -0.81 -46.79 11.82 21.85 0.26 -46.53 16 19 Si 1.00 38.36 29.56 68.60 2.03 40.39 16 20 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 21 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 23 C -0.16 -6.35 8.66 22.37 0.19 -6.15 16 24 C -0.06 -2.01 7.38 22.50 0.17 -1.85 16 25 C 0.06 1.15 4.31 86.50 0.37 1.52 16 26 C 0.07 1.29 3.93 30.83 0.12 1.42 16 27 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 28 C -0.18 -3.06 8.82 71.98 0.63 -2.42 16 29 O -0.38 -7.31 10.23 -148.98 -1.52 -8.84 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 2.10 7.06 -2.38 -0.02 2.08 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.14 3.87 7.95 -2.91 -0.02 3.84 16 36 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.41 14.35 8.80 -92.71 -0.82 13.53 16 38 H 0.28 14.50 8.29 -92.71 -0.77 13.73 16 39 H 0.12 5.46 6.22 -2.91 -0.02 5.44 16 40 H 0.15 4.07 5.63 -2.91 -0.02 4.05 16 41 H 0.09 1.66 7.93 -2.39 -0.02 1.65 16 42 H 0.11 2.41 4.51 -2.38 -0.01 2.39 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 0.94 6.12 -2.39 -0.01 0.93 16 Total: -1.00 -74.05 363.94 2.52 -71.53 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.22 Total: 38.59 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.36 Total: 11.00 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -3.45 Total: -94.25 kcal Atomic # 8 Polarization: -65.61 SS G_CDS: -1.64 Total: -67.26 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -74.05 2.52 -71.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005937238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.400 kcal (2) G-P(sol) polarization free energy of solvation -74.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds