Wall clock time and date at job start Tue Mar 31 2020 17:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.41840 * 2 1 4 4 O 1.43000 * 109.44473 * 240.08217 * 2 1 3 5 5 C 1.35980 * 116.71429 * 286.33804 * 4 2 1 6 6 C 1.38401 * 120.66281 * 147.16191 * 5 4 2 7 7 C 1.38310 * 119.87310 * 180.10365 * 6 5 4 8 8 C 1.38281 * 120.25934 * 359.97438 * 7 6 5 9 9 C 1.38290 * 120.20259 * 359.96365 * 8 7 6 10 10 C 1.38506 * 119.80860 * 0.03741 * 9 8 7 11 11 N 1.40216 * 120.73714 * 180.02562 * 10 9 8 12 12 C 1.46505 * 120.50914 * 15.46751 * 11 10 9 13 13 C 1.52992 * 109.46956 * 89.99444 * 12 11 10 14 14 C 1.50708 * 109.46955 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99944 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00400 * 180.02562 * 14 13 12 17 17 C 1.46512 * 119.99637 * 359.97438 * 16 14 13 18 18 C 1.46491 * 120.00401 * 179.97438 * 16 14 13 19 19 C 1.50702 * 109.46957 * 89.99834 * 18 16 14 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 16 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 C 1.35092 * 118.98201 * 195.73522 * 11 10 9 28 28 O 1.21297 * 120.12921 * 181.39365 * 27 11 10 29 29 H 1.09007 * 109.47280 * 179.91669 * 1 2 3 30 30 H 1.09000 * 109.47711 * 299.91861 * 1 2 3 31 31 H 1.09003 * 109.47429 * 59.91871 * 1 2 3 32 32 H 1.08000 * 120.06256 * 0.07496 * 6 5 4 33 33 H 1.08001 * 119.87152 * 179.97438 * 7 6 5 34 34 H 1.07996 * 119.90465 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.09639 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.46785 * 329.99605 * 12 11 10 37 37 H 1.08998 * 109.46938 * 210.00031 * 12 11 10 38 38 H 1.08999 * 109.47242 * 60.00441 * 13 12 11 39 39 H 1.08998 * 109.47776 * 300.00074 * 13 12 11 40 40 H 1.08995 * 109.46885 * 270.00009 * 17 16 14 41 41 H 1.09002 * 109.46695 * 30.00158 * 17 16 14 42 42 H 1.09003 * 109.46868 * 149.99786 * 17 16 14 43 43 H 1.09004 * 109.47166 * 330.00100 * 18 16 14 44 44 H 1.08994 * 109.47507 * 209.99806 * 18 16 14 45 45 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 8 2.0060 -0.6725 -1.1687 5 6 1.8873 -2.0270 -1.1856 6 6 1.6582 -2.7008 -2.3726 7 6 1.5380 -4.0787 -2.3706 8 6 1.6464 -4.7858 -1.1872 9 6 1.8765 -4.1198 0.0027 10 6 1.9977 -2.7400 0.0071 11 7 2.2317 -2.0450 1.2022 12 6 2.6845 -2.7567 2.4001 13 6 4.2138 -2.7919 2.4248 14 6 4.6795 -3.5245 3.6567 15 8 3.8681 -3.9738 4.4381 16 7 5.9978 -3.6796 3.8905 17 6 6.9780 -3.1364 2.9468 18 6 6.4505 -4.3912 5.0883 19 6 6.5896 -5.8593 4.7777 20 1 6.3639 -6.2256 3.7871 21 6 7.0113 -6.7341 5.7566 22 7 7.2866 -6.2881 6.9628 23 14 7.1911 -8.5526 5.3695 24 1 8.1824 -8.7308 4.2782 25 1 7.6547 -9.2733 6.5824 26 1 5.8789 -9.0997 4.9405 27 6 2.0279 -0.7099 1.2336 28 8 2.2480 -0.0842 2.2492 29 1 -0.3634 -1.0277 -0.0015 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 1.5730 -2.1516 -3.2987 33 1 1.3589 -4.6044 -3.2969 34 1 1.5512 -5.8616 -1.1922 35 1 1.9612 -4.6738 0.9258 36 1 2.2978 -3.7757 2.3851 37 1 2.3184 -2.2421 3.2885 38 1 4.6005 -1.7729 2.4397 39 1 4.5799 -3.3064 1.5364 40 1 7.2094 -3.8870 2.1912 41 1 6.5654 -2.2502 2.4644 42 1 7.8882 -2.8677 3.4829 43 1 5.7222 -4.2565 5.8880 44 1 7.4149 -3.9937 5.4043 45 1 7.5828 -6.9036 7.6516 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057814697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:45 Heat of formation + Delta-G solvation = -68.292190 kcal Electronic energy + Delta-G solvation = -28780.117552 eV Core-core repulsion = 24763.439836 eV Total energy + Delta-G solvation = -4016.677716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93940 -39.26857 -38.94156 -37.98167 -36.04174 -34.84486 -32.72134 -32.38541 -31.56573 -30.60993 -29.21746 -27.85574 -26.15375 -25.36493 -24.19514 -23.60347 -22.75977 -21.62825 -19.49358 -19.43915 -18.47330 -17.64511 -16.62924 -16.56818 -16.44322 -15.88685 -15.71451 -15.49862 -15.14756 -15.05454 -14.74452 -14.42226 -14.39752 -14.11546 -13.56061 -13.36716 -13.23522 -12.83892 -12.67296 -12.49109 -12.34425 -12.18233 -12.14410 -12.07403 -11.85584 -11.53886 -11.43223 -11.22064 -11.01606 -10.90395 -10.65902 -10.51113 -10.17060 -10.06343 -9.66495 -9.01963 -8.91821 -8.44244 -8.08187 -7.67642 -6.05130 -4.10103 0.81361 0.98853 2.07793 2.26677 2.95854 3.30680 3.33851 3.35467 3.40624 3.42513 3.66143 3.96630 4.34844 4.38924 4.43726 4.51022 4.70081 4.84202 4.94657 4.99178 5.04265 5.07414 5.11211 5.17539 5.29093 5.31805 5.42395 5.51456 5.57049 5.61117 5.72374 5.77328 5.92348 5.97540 5.99153 6.16830 6.18317 6.21377 6.35945 6.67776 7.02515 7.09479 7.42202 7.51026 7.52272 7.90471 8.21997 8.36837 8.87080 9.03845 9.54650 11.03036 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.003027 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.068987 B = 9248.287966 C =10302.062986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 H 0.150 0.850 4 O -0.300 6.300 5 C 0.076 3.924 6 C -0.110 4.110 7 C -0.115 4.115 8 C -0.108 4.108 9 C -0.123 4.123 10 C 0.100 3.900 11 N -0.548 5.548 12 C 0.124 3.876 13 C -0.154 4.154 14 C 0.511 3.489 15 O -0.543 6.543 16 N -0.600 5.600 17 C 0.085 3.915 18 C 0.245 3.755 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 C 0.490 3.510 28 O -0.502 6.502 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.044 0.956 44 H 0.032 0.968 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.439 10.316 -21.227 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.020 3.980 3 H 0.167 0.833 4 O -0.215 6.215 5 C 0.029 3.971 6 C -0.129 4.129 7 C -0.133 4.133 8 C -0.127 4.127 9 C -0.143 4.143 10 C 0.006 3.994 11 N -0.272 5.272 12 C 0.003 3.997 13 C -0.195 4.195 14 C 0.296 3.704 15 O -0.422 6.422 16 N -0.332 5.332 17 C -0.059 4.059 18 C 0.126 3.874 19 C -0.566 4.566 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 C 0.277 3.723 28 O -0.376 6.376 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.556 10.543 -20.088 25.930 hybrid contribution 0.353 -1.147 0.015 1.200 sum -12.203 9.396 -20.073 25.301 Atomic orbital electron populations 1.22335 0.92514 1.04000 1.04534 1.22900 0.96554 0.97471 0.81029 0.83296 1.86281 1.79115 1.16234 1.39871 1.18585 1.03235 0.82507 0.92729 1.20511 1.01829 0.94306 0.96289 1.20996 1.00796 0.92973 0.98584 1.21043 0.99613 1.00412 0.91599 1.20877 1.02035 0.91447 0.99987 1.18162 1.03562 0.92757 0.84956 1.45849 1.63094 1.07455 1.10800 1.21492 0.93819 0.98399 0.85996 1.21975 0.96338 1.02374 0.98812 1.19997 0.83053 0.80625 0.86681 1.90676 1.52888 1.50356 1.48257 1.48141 1.04652 1.54817 1.25606 1.21641 0.93302 0.97445 0.93532 1.19321 0.95459 0.90960 0.81663 1.21382 1.45305 0.92468 0.97450 0.92543 1.24943 0.95271 0.99081 0.94834 1.69926 1.45572 1.35389 1.02489 0.86548 0.78501 0.84673 0.77628 1.20243 1.21145 1.20166 1.21479 0.77966 0.81974 0.90856 1.90796 1.48822 1.64877 1.33096 0.91511 0.89894 0.89699 0.84557 0.85002 0.84984 0.84402 0.88471 0.87981 0.89101 0.89154 0.93123 0.92675 0.91258 0.93775 0.94960 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.29 37.15 0.35 -0.98 16 2 C 0.08 0.76 3.82 -27.84 -0.11 0.66 16 3 H 0.15 1.14 8.14 -51.93 -0.42 0.71 16 4 O -0.30 -3.12 10.18 -19.68 -0.20 -3.32 16 5 C 0.08 0.79 5.85 -39.09 -0.23 0.57 16 6 C -0.11 -0.92 10.00 -39.50 -0.39 -1.32 16 7 C -0.11 -0.86 10.04 -39.54 -0.40 -1.25 16 8 C -0.11 -0.92 10.04 -39.55 -0.40 -1.32 16 9 C -0.12 -1.30 9.36 -39.46 -0.37 -1.67 16 10 C 0.10 1.16 6.39 -83.49 -0.53 0.63 16 11 N -0.55 -7.15 2.72 -113.20 -0.31 -7.45 16 12 C 0.12 1.84 4.50 -4.04 -0.02 1.82 16 13 C -0.15 -2.42 4.58 -27.88 -0.13 -2.54 16 14 C 0.51 10.73 7.67 -10.98 -0.08 10.64 16 15 O -0.54 -13.54 15.56 5.56 0.09 -13.45 16 16 N -0.60 -13.03 2.86 -182.95 -0.52 -13.55 16 17 C 0.08 1.40 10.29 59.85 0.62 2.01 16 18 C 0.25 6.52 5.20 -5.20 -0.03 6.49 16 19 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 23 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 C 0.49 6.42 6.91 -10.80 -0.07 6.34 16 28 O -0.50 -8.10 16.77 5.54 0.09 -8.00 16 29 H 0.07 0.55 7.81 -51.93 -0.41 0.15 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.14 1.48 6.12 -52.49 -0.32 1.16 16 36 H 0.10 1.39 5.92 -51.93 -0.31 1.08 16 37 H 0.10 1.70 7.44 -51.93 -0.39 1.31 16 38 H 0.09 1.38 7.40 -51.93 -0.38 0.99 16 39 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.74 6.44 -51.93 -0.33 0.41 16 42 H 0.07 1.10 7.89 -51.93 -0.41 0.69 16 43 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 44 H 0.03 0.87 7.89 -51.93 -0.41 0.46 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -35.11 376.30 -7.95 -43.06 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.27 Total: -0.07 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -2.22 Total: 6.33 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.09 Total: -47.07 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.02 Total: -24.77 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.11 -7.95 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057814697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.232 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds