Wall clock time and date at job start Tue Mar 31 2020 17:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.41840 * 2 1 4 4 O 1.43000 * 109.44473 * 240.08217 * 2 1 3 5 5 C 1.35980 * 116.71429 * 286.33804 * 4 2 1 6 6 C 1.38401 * 120.66281 * 147.16191 * 5 4 2 7 7 C 1.38310 * 119.87310 * 180.10365 * 6 5 4 8 8 C 1.38281 * 120.25934 * 359.97438 * 7 6 5 9 9 C 1.38290 * 120.20259 * 359.96365 * 8 7 6 10 10 C 1.38506 * 119.80860 * 0.03741 * 9 8 7 11 11 N 1.40216 * 120.73714 * 180.02562 * 10 9 8 12 12 C 1.46505 * 120.50914 * 15.46751 * 11 10 9 13 13 C 1.52992 * 109.46956 * 89.99444 * 12 11 10 14 14 C 1.50708 * 109.46955 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99944 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00400 * 180.02562 * 14 13 12 17 17 C 1.46512 * 119.99637 * 359.97438 * 16 14 13 18 18 C 1.46491 * 120.00401 * 179.97438 * 16 14 13 19 19 C 1.50702 * 109.46957 * 89.99834 * 18 16 14 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 16 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 C 1.35092 * 118.98201 * 195.73522 * 11 10 9 28 28 O 1.21297 * 120.12921 * 181.39365 * 27 11 10 29 29 H 1.09007 * 109.47280 * 179.91669 * 1 2 3 30 30 H 1.09000 * 109.47711 * 299.91861 * 1 2 3 31 31 H 1.09003 * 109.47429 * 59.91871 * 1 2 3 32 32 H 1.08000 * 120.06256 * 0.07496 * 6 5 4 33 33 H 1.08001 * 119.87152 * 179.97438 * 7 6 5 34 34 H 1.07996 * 119.90465 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.09639 * 180.02562 * 9 8 7 36 36 H 1.08999 * 109.46785 * 329.99605 * 12 11 10 37 37 H 1.08998 * 109.46938 * 210.00031 * 12 11 10 38 38 H 1.08999 * 109.47242 * 60.00441 * 13 12 11 39 39 H 1.08998 * 109.47776 * 300.00074 * 13 12 11 40 40 H 1.08995 * 109.46885 * 270.00009 * 17 16 14 41 41 H 1.09002 * 109.46695 * 30.00158 * 17 16 14 42 42 H 1.09003 * 109.46868 * 149.99786 * 17 16 14 43 43 H 1.09004 * 109.47166 * 330.00100 * 18 16 14 44 44 H 1.08994 * 109.47507 * 209.99806 * 18 16 14 45 45 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 8 2.0060 -0.6725 -1.1687 5 6 1.8873 -2.0270 -1.1856 6 6 1.6582 -2.7008 -2.3726 7 6 1.5380 -4.0787 -2.3706 8 6 1.6464 -4.7858 -1.1872 9 6 1.8765 -4.1198 0.0027 10 6 1.9977 -2.7400 0.0071 11 7 2.2317 -2.0450 1.2022 12 6 2.6845 -2.7567 2.4001 13 6 4.2138 -2.7919 2.4248 14 6 4.6795 -3.5245 3.6567 15 8 3.8681 -3.9738 4.4381 16 7 5.9978 -3.6796 3.8905 17 6 6.9780 -3.1364 2.9468 18 6 6.4505 -4.3912 5.0883 19 6 6.5896 -5.8593 4.7777 20 1 6.3639 -6.2256 3.7871 21 6 7.0113 -6.7341 5.7566 22 7 7.2866 -6.2881 6.9628 23 14 7.1911 -8.5526 5.3695 24 1 8.1824 -8.7308 4.2782 25 1 7.6547 -9.2733 6.5824 26 1 5.8789 -9.0997 4.9405 27 6 2.0279 -0.7099 1.2336 28 8 2.2480 -0.0842 2.2492 29 1 -0.3634 -1.0277 -0.0015 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 1.5730 -2.1516 -3.2987 33 1 1.3589 -4.6044 -3.2969 34 1 1.5512 -5.8616 -1.1922 35 1 1.9612 -4.6738 0.9258 36 1 2.2978 -3.7757 2.3851 37 1 2.3184 -2.2421 3.2885 38 1 4.6005 -1.7729 2.4397 39 1 4.5799 -3.3064 1.5364 40 1 7.2094 -3.8870 2.1912 41 1 6.5654 -2.2502 2.4644 42 1 7.8882 -2.8677 3.4829 43 1 5.7222 -4.2565 5.8880 44 1 7.4149 -3.9937 5.4043 45 1 7.5828 -6.9036 7.6516 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057814697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:44 Heat of formation + Delta-G solvation = -90.807931 kcal Electronic energy + Delta-G solvation = -28781.093908 eV Core-core repulsion = 24763.439836 eV Total energy + Delta-G solvation = -4017.654072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.80367 -40.79584 -39.99224 -38.79447 -37.08761 -36.62547 -34.79191 -33.29154 -32.69586 -31.32700 -30.24883 -29.56259 -27.53921 -26.77636 -25.18374 -24.64647 -24.12231 -22.74679 -20.34042 -20.25047 -20.11354 -18.75332 -18.65447 -17.82677 -17.45007 -17.07280 -16.88669 -16.67481 -16.49447 -16.23729 -16.05590 -15.64831 -15.27941 -15.22062 -14.72189 -14.51099 -14.22351 -14.08785 -13.90527 -13.72225 -13.54010 -13.51369 -13.45687 -13.20577 -13.06194 -12.86319 -12.81075 -12.54113 -12.39757 -12.21535 -12.15609 -12.11456 -11.76026 -11.54922 -11.01884 -10.74409 -10.66048 -9.66117 -9.51389 -8.91771 -8.24481 -6.39944 0.05176 0.29270 1.16577 1.28842 1.36100 1.40603 1.48076 1.69455 2.20465 2.28327 2.42823 2.73290 2.83620 3.05133 3.54061 3.60705 3.69918 3.72407 3.79510 3.90807 4.01256 4.19304 4.22908 4.31376 4.40388 4.45054 4.50443 4.57614 4.66585 4.67750 4.70878 4.76065 4.85147 4.95953 4.98302 5.02561 5.17209 5.27110 5.30787 5.51200 5.55166 5.69464 5.77471 5.83486 6.02153 6.28893 6.54210 6.61610 6.70450 7.22140 7.37200 8.82937 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.003027 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.068987 B = 9248.287966 C =10302.062986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 H 0.170 0.830 4 O -0.302 6.302 5 C 0.066 3.934 6 C -0.107 4.107 7 C -0.101 4.101 8 C -0.110 4.110 9 C -0.137 4.137 10 C 0.075 3.925 11 N -0.547 5.547 12 C 0.131 3.869 13 C -0.131 4.131 14 C 0.503 3.497 15 O -0.592 6.592 16 N -0.608 5.608 17 C 0.080 3.920 18 C 0.258 3.742 19 C -0.545 4.545 20 H 0.056 0.944 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.971 3.029 24 H -0.259 1.259 25 H -0.279 1.279 26 H -0.275 1.275 27 C 0.482 3.518 28 O -0.544 6.544 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.073 0.927 43 H -0.002 1.002 44 H 0.024 0.976 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.651 9.768 -25.237 29.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.026 3.974 3 H 0.187 0.813 4 O -0.217 6.217 5 C 0.020 3.980 6 C -0.126 4.126 7 C -0.120 4.120 8 C -0.128 4.128 9 C -0.157 4.157 10 C -0.019 4.019 11 N -0.271 5.271 12 C 0.009 3.991 13 C -0.172 4.172 14 C 0.291 3.709 15 O -0.474 6.474 16 N -0.339 5.339 17 C -0.062 4.062 18 C 0.137 3.863 19 C -0.584 4.584 20 H 0.074 0.926 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.794 3.206 24 H -0.184 1.184 25 H -0.204 1.204 26 H -0.200 1.200 27 C 0.272 3.728 28 O -0.421 6.421 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.016 0.984 44 H 0.042 0.958 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.756 10.008 -24.174 29.107 hybrid contribution 0.383 -0.981 1.210 1.604 sum -12.372 9.027 -22.963 27.602 Atomic orbital electron populations 1.22323 0.90847 1.03755 1.05796 1.23046 0.97742 0.97585 0.79037 0.81320 1.86276 1.79411 1.16299 1.39702 1.18846 1.03662 0.82553 0.92970 1.20883 1.00569 0.94835 0.96317 1.21409 0.98476 0.92722 0.99368 1.21336 0.98813 1.01494 0.91204 1.20953 1.02908 0.91258 1.00598 1.18355 1.05723 0.93201 0.84600 1.45788 1.62972 1.07620 1.10750 1.21199 0.93239 0.98362 0.86344 1.21809 0.96819 1.02080 0.96459 1.20880 0.82334 0.80045 0.87617 1.90643 1.54121 1.52392 1.50235 1.48173 1.06091 1.54521 1.25139 1.21919 0.92537 0.98952 0.92786 1.18815 0.93556 0.91174 0.82735 1.21662 1.45561 0.93551 0.97590 0.92616 1.25914 0.94606 1.04238 0.94518 1.70056 1.46110 1.37250 1.03518 0.85422 0.78746 0.78306 0.78076 1.18367 1.20375 1.20017 1.22260 0.77138 0.81832 0.91602 1.90770 1.50828 1.65653 1.34818 0.92490 0.89790 0.87200 0.82151 0.81656 0.83127 0.85559 0.88484 0.90554 0.88034 0.86877 0.91867 0.89190 0.90805 0.98390 0.95794 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.29 71.98 0.67 -1.61 16 2 C 0.08 1.51 3.82 29.88 0.11 1.62 16 3 H 0.17 2.27 8.14 -2.39 -0.02 2.25 16 4 O -0.30 -5.60 10.18 -93.33 -0.95 -6.55 16 5 C 0.07 1.24 5.85 22.59 0.13 1.37 16 6 C -0.11 -1.41 10.00 22.33 0.22 -1.19 16 7 C -0.10 -1.12 10.04 22.30 0.22 -0.89 16 8 C -0.11 -1.59 10.04 22.29 0.22 -1.36 16 9 C -0.14 -2.77 9.36 22.35 0.21 -2.56 16 10 C 0.07 1.65 6.39 38.14 0.24 1.90 16 11 N -0.55 -14.38 2.72 -630.25 -1.71 -16.09 16 12 C 0.13 4.04 4.50 86.38 0.39 4.43 16 13 C -0.13 -4.11 4.58 29.85 0.14 -3.97 16 14 C 0.50 21.81 7.67 87.66 0.67 22.48 16 15 O -0.59 -31.25 15.56 -3.03 -0.05 -31.30 16 16 N -0.61 -26.94 2.86 -851.12 -2.43 -29.37 16 17 C 0.08 2.55 10.29 127.76 1.31 3.86 16 18 C 0.26 14.36 5.20 85.64 0.45 14.81 16 19 C -0.55 -31.85 9.39 25.60 0.24 -31.61 16 20 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 21 C 0.01 0.36 5.46 84.66 0.46 0.82 16 22 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 23 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 27 C 0.48 12.68 6.91 87.64 0.61 13.28 16 28 O -0.54 -18.09 16.77 -3.08 -0.05 -18.14 16 29 H 0.06 0.88 7.81 -2.38 -0.02 0.86 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.13 2.77 6.12 -2.91 -0.02 2.75 16 36 H 0.10 2.95 5.92 -2.39 -0.01 2.94 16 37 H 0.08 2.74 7.44 -2.39 -0.02 2.72 16 38 H 0.10 3.00 7.40 -2.39 -0.02 2.99 16 39 H 0.11 3.06 8.11 -2.39 -0.02 3.04 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.09 2.22 6.44 -2.39 -0.02 2.21 16 42 H 0.07 2.27 7.89 -2.39 -0.02 2.25 16 43 H 0.00 -0.13 7.42 -2.38 -0.02 -0.15 16 44 H 0.02 1.35 7.89 -2.39 -0.02 1.33 16 45 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -80.05 376.30 4.43 -75.62 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.00 Total: 14.24 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 6.30 Total: 21.38 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -3.86 Total: -102.20 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -1.05 Total: -55.99 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -80.05 4.43 -75.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057814697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.184 kcal (2) G-P(sol) polarization free energy of solvation -80.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds