Wall clock time and date at job start Tue Mar 31 2020 16:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 O 1.42895 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.35809 * 117.00461 * 180.02562 * 4 3 2 6 6 C 1.38842 * 119.91786 * 0.02562 * 5 4 3 7 7 C 1.37778 * 120.15372 * 179.97438 * 6 5 4 8 8 C 1.39771 * 119.99826 * 0.02562 * 7 6 5 9 9 C 1.47498 * 120.07846 * 179.97438 * 8 7 6 10 10 O 1.21616 * 119.99980 * 222.90112 * 9 8 7 11 11 N 1.34774 * 119.99548 * 42.90191 * 9 8 7 12 12 C 1.36909 * 119.99318 * 182.43564 * 11 9 8 13 13 H 1.07992 * 120.00228 * 349.01561 * 12 11 9 14 14 C 1.39023 * 119.99383 * 169.02451 * 12 11 9 15 15 N 1.31380 * 120.00519 * 3.36302 * 14 12 11 16 16 Si 1.86801 * 119.99588 * 183.36881 * 14 12 11 17 17 H 1.48498 * 109.47282 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47488 * 119.99613 * 16 14 12 19 19 H 1.48505 * 109.47148 * 239.99388 * 16 14 12 20 20 C 1.46497 * 120.00541 * 2.43314 * 11 9 8 21 21 C 1.47200 * 109.47245 * 263.29914 * 20 11 9 22 22 N 8.03825 * 94.88688 * 4.12880 * 2 1 3 23 23 C 1.39796 * 119.84326 * 0.02562 * 8 7 6 24 24 C 1.38120 * 119.84740 * 359.97438 * 23 8 7 25 25 O 1.35993 * 120.00091 * 180.29293 * 24 23 8 26 26 C 1.42898 * 117.00191 * 359.72942 * 25 24 23 27 27 C 1.52996 * 109.47738 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47199 * 300.00156 * 1 2 3 29 29 H 1.09003 * 109.46896 * 59.99610 * 1 2 3 30 30 H 1.08998 * 109.47408 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47199 * 239.99844 * 2 1 3 32 32 H 1.09001 * 109.46973 * 119.99848 * 2 1 3 33 33 H 1.08998 * 109.47222 * 59.99858 * 3 2 1 34 34 H 1.09003 * 109.47565 * 299.99981 * 3 2 1 35 35 H 1.08004 * 119.92611 * 359.97361 * 6 5 4 36 36 H 1.08004 * 120.00178 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00239 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.47126 * 23.29606 * 20 11 9 39 39 H 1.09001 * 109.47189 * 143.29390 * 20 11 9 40 40 H 1.07994 * 120.07210 * 180.02562 * 23 8 7 41 41 H 1.09002 * 109.46992 * 299.99695 * 26 25 24 42 42 H 1.09008 * 109.47143 * 59.99293 * 26 25 24 43 43 H 1.08998 * 109.47285 * 299.99735 * 27 26 25 44 44 H 1.09001 * 109.46729 * 59.99788 * 27 26 25 45 45 H 1.09004 * 109.47361 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0856 2.6526 0.0012 6 6 3.3278 3.8160 0.0018 7 6 3.9483 5.0461 0.0030 8 6 5.3438 5.1249 0.0030 9 6 6.0099 6.4409 0.0037 10 8 6.9729 6.6353 -0.7131 11 7 5.5513 7.4278 0.7988 12 6 6.1383 8.6641 0.7628 13 1 7.0712 8.8039 0.2372 14 6 5.5332 9.7396 1.4032 15 7 4.4334 9.5564 2.0981 16 14 6.2841 11.4453 1.2755 17 1 7.5118 11.3846 0.4422 18 1 5.3060 12.3712 0.6498 19 1 6.6316 11.9361 2.6333 20 6 4.4248 7.1777 1.7014 21 6 3.1774 7.6351 1.0677 22 7 2.2148 7.9882 0.5766 23 6 6.1067 3.9534 0.0014 24 6 5.4779 2.7236 0.0002 25 8 6.2170 1.5821 0.0046 26 6 7.6384 1.7294 0.0043 27 6 8.2945 0.3473 0.0103 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 2.2494 3.7566 0.0013 36 1 3.3564 5.9495 0.0038 37 1 4.0111 10.3068 2.5445 38 1 4.3562 6.1099 1.9096 39 1 4.5790 7.7205 2.6339 40 1 7.1851 4.0100 0.0018 41 1 7.9469 2.2746 -0.8877 42 1 7.9466 2.2815 0.8923 43 1 7.9860 -0.1975 0.9025 44 1 7.9863 -0.2050 -0.8775 45 1 9.3787 0.4598 0.0096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060859932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:23 Heat of formation + Delta-G solvation = -39.121449 kcal Electronic energy + Delta-G solvation = -28569.142878 eV Core-core repulsion = 24553.730100 eV Total energy + Delta-G solvation = -4015.412778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.55433 -39.03758 -38.57643 -36.41218 -35.94985 -34.37215 -34.03128 -32.08043 -31.69034 -30.15974 -29.27314 -27.52298 -26.75050 -25.10496 -23.97540 -22.59748 -22.17043 -21.02518 -19.80478 -18.30094 -18.08224 -17.51644 -16.46888 -16.36833 -16.21011 -15.89807 -15.81324 -14.99693 -14.73797 -14.30269 -14.23450 -14.18590 -13.63449 -13.45932 -13.16950 -13.07349 -12.96343 -12.70106 -12.46987 -12.25891 -12.14389 -12.07238 -11.87341 -11.61552 -11.48694 -11.35203 -11.33020 -11.20730 -11.06715 -10.83824 -10.67835 -10.66628 -10.50337 -10.41336 -10.24822 -9.38403 -8.81005 -8.52882 -8.23940 -7.60031 -6.49897 -4.10590 1.32477 1.55102 3.04349 3.16333 3.17374 3.23039 3.26438 3.46623 3.65094 3.89788 4.04544 4.11789 4.66072 4.69068 4.69403 4.85332 4.93112 4.93693 5.00379 5.06701 5.07798 5.22460 5.25084 5.25278 5.32865 5.40639 5.48542 5.55670 5.57736 5.64534 5.71097 5.75996 5.84565 5.85318 5.96438 5.98210 6.08795 6.29055 6.43436 6.70519 6.77884 6.83917 7.17201 7.36375 7.70042 7.77703 8.20725 8.70024 8.89524 9.08733 9.62440 10.44064 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.003560 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.992867 B = 7863.408722 C = 9828.546629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.055 3.945 4 O -0.305 6.305 5 C 0.106 3.894 6 C -0.176 4.176 7 C -0.099 4.099 8 C -0.096 4.096 9 C 0.490 3.510 10 O -0.573 6.573 11 N -0.434 5.434 12 C -0.295 4.295 13 H 0.114 0.886 14 C 0.028 3.972 15 N -0.891 5.891 16 Si 0.939 3.061 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.278 1.278 20 C 0.206 3.794 21 C 0.258 3.742 22 N -0.486 5.486 23 C -0.128 4.128 24 C 0.094 3.906 25 O -0.307 6.307 26 C 0.050 3.950 27 C -0.148 4.148 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.274 0.726 38 H 0.080 0.920 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -17.361 1.157 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.020 4.020 4 O -0.219 6.219 5 C 0.061 3.939 6 C -0.194 4.194 7 C -0.118 4.118 8 C -0.099 4.099 9 C 0.279 3.721 10 O -0.457 6.457 11 N -0.153 5.153 12 C -0.423 4.423 13 H 0.132 0.868 14 C -0.174 4.174 15 N -0.533 5.533 16 Si 0.765 3.235 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.204 1.204 20 C 0.079 3.921 21 C -0.059 4.059 22 N -0.167 5.167 23 C -0.148 4.148 24 C 0.049 3.951 25 O -0.222 6.222 26 C -0.025 4.025 27 C -0.206 4.206 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.172 0.828 40 H 0.159 0.841 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.843 -16.964 0.207 17.202 hybrid contribution 0.415 1.292 0.219 1.375 sum -2.428 -15.671 0.426 15.864 Atomic orbital electron populations 1.21696 0.94404 1.02335 1.02304 1.21455 0.95829 0.94999 1.03641 1.22878 0.78976 0.98628 1.01522 1.86072 1.20628 1.26229 1.88955 1.18273 0.88899 0.84868 1.01897 1.20936 0.99786 0.91169 1.07557 1.21443 0.93782 0.97844 0.98776 1.19899 0.93188 0.94248 1.02597 1.17812 0.86767 0.84049 0.83468 1.90645 1.29216 1.82470 1.43343 1.43581 1.27309 1.10677 1.33690 1.19973 1.06945 0.83111 1.32225 0.86830 1.25357 0.95694 1.00553 0.95749 1.69697 1.18847 1.32243 1.32480 0.85634 0.79006 0.80569 0.78258 1.19031 1.20603 1.20386 1.19488 0.77895 0.98788 0.95931 1.29258 0.93798 0.90474 0.92331 1.80982 1.13645 1.12086 1.10004 1.21066 1.00598 0.89658 1.03486 1.17966 0.87966 0.85795 1.03410 1.86120 1.18484 1.28177 1.89379 1.22799 0.78805 0.99135 1.01788 1.21739 0.99971 0.95575 1.03267 0.92307 0.92372 0.91881 0.90922 0.90861 0.91972 0.92095 0.84766 0.84859 0.91448 0.90194 0.82758 0.84084 0.91861 0.91912 0.91676 0.91712 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -1.05 6.30 -26.73 -0.17 -1.22 16 3 C 0.06 0.59 4.74 37.16 0.18 0.77 16 4 O -0.30 -4.39 9.91 -33.80 -0.33 -4.73 16 5 C 0.11 1.68 6.71 -38.92 -0.26 1.41 16 6 C -0.18 -2.71 9.01 -39.53 -0.36 -3.06 16 7 C -0.10 -1.78 7.57 -39.18 -0.30 -2.07 16 8 C -0.10 -1.87 4.97 -104.97 -0.52 -2.39 16 9 C 0.49 11.49 7.23 -12.49 -0.09 11.40 16 10 O -0.57 -15.17 16.56 5.26 0.09 -15.09 16 11 N -0.43 -10.29 2.60 -119.14 -0.31 -10.60 16 12 C -0.30 -7.55 9.48 -14.99 -0.14 -7.69 16 13 H 0.11 3.04 7.20 -52.49 -0.38 2.66 16 14 C 0.03 0.67 5.38 -17.45 -0.09 0.58 16 15 N -0.89 -21.52 8.07 55.50 0.45 -21.07 16 16 Si 0.94 19.80 29.55 -169.99 -5.02 14.77 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 C 0.21 4.27 4.76 -6.83 -0.03 4.24 16 21 C 0.26 5.73 10.51 -20.73 -0.22 5.52 16 22 N -0.49 -11.41 18.48 42.19 0.78 -10.63 16 23 C -0.13 -2.23 8.65 -39.04 -0.34 -2.57 16 24 C 0.09 1.53 6.69 -39.19 -0.26 1.27 16 25 O -0.31 -4.63 9.92 -34.38 -0.34 -4.97 16 26 C 0.05 0.59 5.46 37.16 0.20 0.79 16 27 C -0.15 -1.34 10.28 37.16 0.38 -0.95 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 34 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 35 H 0.13 1.73 6.27 -52.48 -0.33 1.40 16 36 H 0.13 2.58 4.20 -52.48 -0.22 2.36 16 37 H 0.27 6.44 8.31 -40.82 -0.34 6.11 16 38 H 0.08 1.42 5.66 -51.93 -0.29 1.12 16 39 H 0.16 3.30 5.99 -51.93 -0.31 2.99 16 40 H 0.14 2.34 6.28 -52.49 -0.33 2.01 16 41 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 42 H 0.06 0.70 7.65 -51.92 -0.40 0.30 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -30.41 373.71 -6.68 -37.09 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.97 Total: 4.23 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.65 Total: 5.37 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.92 Total: -42.31 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.59 Total: -24.79 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.41 -6.68 -37.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.032 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds