Wall clock time and date at job start Tue Mar 31 2020 16:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 O 1.42895 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.35809 * 117.00461 * 180.02562 * 4 3 2 6 6 C 1.38842 * 119.91786 * 0.02562 * 5 4 3 7 7 C 1.37778 * 120.15372 * 179.97438 * 6 5 4 8 8 C 1.39771 * 119.99826 * 0.02562 * 7 6 5 9 9 C 1.47498 * 120.07846 * 179.97438 * 8 7 6 10 10 O 1.21616 * 119.99980 * 222.90112 * 9 8 7 11 11 N 1.34774 * 119.99548 * 42.90191 * 9 8 7 12 12 C 1.36909 * 119.99318 * 182.43564 * 11 9 8 13 13 H 1.07992 * 120.00228 * 349.01561 * 12 11 9 14 14 C 1.39023 * 119.99383 * 169.02451 * 12 11 9 15 15 N 1.31380 * 120.00519 * 3.36302 * 14 12 11 16 16 Si 1.86801 * 119.99588 * 183.36881 * 14 12 11 17 17 H 1.48498 * 109.47282 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47488 * 119.99613 * 16 14 12 19 19 H 1.48505 * 109.47148 * 239.99388 * 16 14 12 20 20 C 1.46497 * 120.00541 * 2.43314 * 11 9 8 21 21 C 1.47200 * 109.47245 * 263.29914 * 20 11 9 22 22 N 8.03825 * 94.88688 * 4.12880 * 2 1 3 23 23 C 1.39796 * 119.84326 * 0.02562 * 8 7 6 24 24 C 1.38120 * 119.84740 * 359.97438 * 23 8 7 25 25 O 1.35993 * 120.00091 * 180.29293 * 24 23 8 26 26 C 1.42898 * 117.00191 * 359.72942 * 25 24 23 27 27 C 1.52996 * 109.47738 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47199 * 300.00156 * 1 2 3 29 29 H 1.09003 * 109.46896 * 59.99610 * 1 2 3 30 30 H 1.08998 * 109.47408 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47199 * 239.99844 * 2 1 3 32 32 H 1.09001 * 109.46973 * 119.99848 * 2 1 3 33 33 H 1.08998 * 109.47222 * 59.99858 * 3 2 1 34 34 H 1.09003 * 109.47565 * 299.99981 * 3 2 1 35 35 H 1.08004 * 119.92611 * 359.97361 * 6 5 4 36 36 H 1.08004 * 120.00178 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00239 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.47126 * 23.29606 * 20 11 9 39 39 H 1.09001 * 109.47189 * 143.29390 * 20 11 9 40 40 H 1.07994 * 120.07210 * 180.02562 * 23 8 7 41 41 H 1.09002 * 109.46992 * 299.99695 * 26 25 24 42 42 H 1.09008 * 109.47143 * 59.99293 * 26 25 24 43 43 H 1.08998 * 109.47285 * 299.99735 * 27 26 25 44 44 H 1.09001 * 109.46729 * 59.99788 * 27 26 25 45 45 H 1.09004 * 109.47361 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0856 2.6526 0.0012 6 6 3.3278 3.8160 0.0018 7 6 3.9483 5.0461 0.0030 8 6 5.3438 5.1249 0.0030 9 6 6.0099 6.4409 0.0037 10 8 6.9729 6.6353 -0.7131 11 7 5.5513 7.4278 0.7988 12 6 6.1383 8.6641 0.7628 13 1 7.0712 8.8039 0.2372 14 6 5.5332 9.7396 1.4032 15 7 4.4334 9.5564 2.0981 16 14 6.2841 11.4453 1.2755 17 1 7.5118 11.3846 0.4422 18 1 5.3060 12.3712 0.6498 19 1 6.6316 11.9361 2.6333 20 6 4.4248 7.1777 1.7014 21 6 3.1774 7.6351 1.0677 22 7 2.2148 7.9882 0.5766 23 6 6.1067 3.9534 0.0014 24 6 5.4779 2.7236 0.0002 25 8 6.2170 1.5821 0.0046 26 6 7.6384 1.7294 0.0043 27 6 8.2945 0.3473 0.0103 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 2.2494 3.7566 0.0013 36 1 3.3564 5.9495 0.0038 37 1 4.0111 10.3068 2.5445 38 1 4.3562 6.1099 1.9096 39 1 4.5790 7.7205 2.6339 40 1 7.1851 4.0100 0.0018 41 1 7.9469 2.2746 -0.8877 42 1 7.9466 2.2815 0.8923 43 1 7.9860 -0.1975 0.9025 44 1 7.9863 -0.2050 -0.8775 45 1 9.3787 0.4598 0.0096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060859932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:22 Heat of formation + Delta-G solvation = -55.354099 kcal Electronic energy + Delta-G solvation = -28569.846778 eV Core-core repulsion = 24553.730100 eV Total energy + Delta-G solvation = -4016.116678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87373 -40.65159 -39.68246 -37.80649 -37.72576 -36.20496 -34.81476 -33.79790 -32.75175 -31.49958 -30.56503 -29.21277 -27.74903 -26.74928 -25.02801 -24.03853 -23.01779 -22.09230 -21.28736 -19.93039 -19.56383 -18.88287 -18.06822 -17.64281 -17.42633 -17.25520 -16.82846 -16.70943 -16.05910 -15.94035 -15.36121 -15.28523 -15.04993 -14.97771 -14.80095 -14.16876 -14.02195 -13.88103 -13.51803 -13.48303 -13.39221 -13.35104 -13.10816 -13.08734 -12.90262 -12.88068 -12.48348 -12.41267 -12.30962 -12.12518 -12.08455 -12.03275 -11.79789 -11.61378 -11.47520 -11.23663 -10.64857 -10.12991 -9.84988 -8.89043 -8.36131 -6.05180 -0.06277 0.22854 1.34900 1.43341 1.55286 1.78579 1.89525 2.10577 2.16102 2.20866 2.29078 2.61127 2.99045 3.00738 3.54134 3.70533 3.80576 3.87914 3.99250 4.03374 4.08442 4.11445 4.17975 4.23935 4.35141 4.42016 4.48560 4.50707 4.58938 4.62813 4.81987 4.86928 4.91339 4.98485 5.07567 5.11530 5.15709 5.22227 5.26054 5.32441 5.37185 5.41212 5.48085 5.91663 6.07858 6.33610 6.53193 6.91943 7.00551 7.23148 7.78052 8.54294 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.003560 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.992867 B = 7863.408722 C = 9828.546629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.044 3.956 4 O -0.313 6.313 5 C 0.116 3.884 6 C -0.165 4.165 7 C -0.100 4.100 8 C -0.117 4.117 9 C 0.486 3.514 10 O -0.615 6.615 11 N -0.443 5.443 12 C -0.328 4.328 13 H 0.090 0.910 14 C 0.003 3.997 15 N -0.896 5.896 16 Si 0.994 3.006 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.262 1.262 20 C 0.212 3.788 21 C 0.269 3.731 22 N -0.509 5.509 23 C -0.127 4.127 24 C 0.094 3.906 25 O -0.314 6.314 26 C 0.039 3.961 27 C -0.143 4.143 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.163 0.837 36 H 0.120 0.880 37 H 0.277 0.723 38 H 0.113 0.887 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 -18.959 1.798 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.031 4.031 4 O -0.227 6.227 5 C 0.069 3.931 6 C -0.183 4.183 7 C -0.120 4.120 8 C -0.120 4.120 9 C 0.277 3.723 10 O -0.502 6.502 11 N -0.161 5.161 12 C -0.455 4.455 13 H 0.108 0.892 14 C -0.198 4.198 15 N -0.536 5.536 16 Si 0.818 3.182 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.187 1.187 20 C 0.086 3.914 21 C -0.047 4.047 22 N -0.191 5.191 23 C -0.147 4.147 24 C 0.048 3.952 25 O -0.229 6.229 26 C -0.035 4.035 27 C -0.199 4.199 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.180 0.820 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.878 -18.588 0.876 19.008 hybrid contribution 0.697 1.630 0.001 1.773 sum -3.181 -16.958 0.877 17.276 Atomic orbital electron populations 1.21690 0.92861 1.03230 1.02649 1.21470 0.97004 0.93546 1.03546 1.23248 0.76920 1.00404 1.02497 1.86090 1.22831 1.25385 1.88376 1.18386 0.88892 0.85549 1.00228 1.21101 1.01103 0.89888 1.06244 1.21283 0.92819 0.98379 0.99510 1.19585 0.93915 0.92687 1.05859 1.18426 0.86183 0.85273 0.82445 1.90595 1.31130 1.83535 1.44910 1.43701 1.27871 1.10343 1.34175 1.19875 1.07176 0.84708 1.33777 0.89165 1.25963 0.95993 1.02840 0.94968 1.69787 1.18916 1.32926 1.31994 0.84836 0.77878 0.76815 0.78695 1.19622 1.21032 1.18699 1.19571 0.76430 1.00620 0.94776 1.29480 0.93715 0.89772 0.91774 1.80971 1.14474 1.12955 1.10659 1.21022 1.00665 0.89537 1.03476 1.18035 0.88629 0.85717 1.02827 1.86131 1.20100 1.27581 1.89056 1.23106 0.77289 1.01157 1.01967 1.21762 1.01036 0.93720 1.03426 0.91892 0.92101 0.90776 0.91147 0.90896 0.90774 0.91244 0.81954 0.86188 0.91229 0.87000 0.83185 0.83962 0.92026 0.91451 0.91368 0.91656 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.74 6.30 30.59 0.19 -1.55 16 3 C 0.04 0.82 4.74 71.98 0.34 1.16 16 4 O -0.31 -8.27 9.91 -77.39 -0.77 -9.04 16 5 C 0.12 3.43 6.71 22.70 0.15 3.58 16 6 C -0.16 -4.73 9.01 22.31 0.20 -4.53 16 7 C -0.10 -3.52 7.57 22.53 0.17 -3.35 16 8 C -0.12 -4.59 4.97 -20.09 -0.10 -4.69 16 9 C 0.49 23.48 7.23 86.68 0.63 24.10 16 10 O -0.61 -33.98 16.56 -4.08 -0.07 -34.05 16 11 N -0.44 -21.50 2.60 -649.08 -1.69 -23.19 16 12 C -0.33 -17.25 9.48 84.09 0.80 -16.46 16 13 H 0.09 5.07 7.20 -2.91 -0.02 5.05 16 14 C 0.00 0.13 5.38 84.95 0.46 0.59 16 15 N -0.90 -42.99 8.07 21.68 0.17 -42.82 16 16 Si 0.99 40.64 29.55 68.60 2.03 42.67 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 C 0.21 8.79 4.76 84.57 0.40 9.19 16 21 C 0.27 11.87 10.51 89.43 0.94 12.81 16 22 N -0.51 -23.71 18.48 20.02 0.37 -23.34 16 23 C -0.13 -4.42 8.65 22.62 0.20 -4.22 16 24 C 0.09 2.95 6.69 22.53 0.15 3.11 16 25 O -0.31 -9.07 9.92 -79.45 -0.79 -9.86 16 26 C 0.04 0.89 5.46 71.98 0.39 1.28 16 27 C -0.14 -2.30 10.28 71.98 0.74 -1.56 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.23 7.65 -2.39 -0.02 1.21 16 34 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 35 H 0.16 3.69 6.27 -2.91 -0.02 3.67 16 36 H 0.12 4.57 4.20 -2.91 -0.01 4.56 16 37 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 38 H 0.11 3.89 5.66 -2.39 -0.01 3.88 16 39 H 0.15 6.40 5.99 -2.39 -0.01 6.38 16 40 H 0.14 4.79 6.28 -2.91 -0.02 4.77 16 41 H 0.06 1.40 7.67 -2.39 -0.02 1.39 16 42 H 0.07 1.45 7.65 -2.38 -0.02 1.43 16 43 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -65.94 373.71 6.66 -59.28 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.02 Total: 21.76 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.37 Total: 18.58 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -1.14 Total: -89.34 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -1.62 Total: -52.95 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -65.94 6.66 -59.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.928 kcal (2) G-P(sol) polarization free energy of solvation -65.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds