Wall clock time and date at job start Tue Mar 31 2020 18:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46872 * 2 1 4 4 C 1.50696 * 109.47350 * 239.99494 * 2 1 3 5 5 H 1.08004 * 120.00148 * 240.00144 * 4 2 1 6 6 C 1.37879 * 119.99860 * 60.00031 * 4 2 1 7 7 N 1.31514 * 119.99998 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99821 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46690 * 60.00291 * 8 6 4 10 10 H 1.48498 * 109.46899 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47159 * 299.99881 * 8 6 4 12 12 N 1.46497 * 109.46741 * 119.99365 * 2 1 3 13 13 C 1.34782 * 120.00374 * 275.00181 * 12 2 1 14 14 O 1.21553 * 119.99606 * 0.02562 * 13 12 2 15 15 C 1.47855 * 119.99879 * 180.02562 * 13 12 2 16 16 C 1.39617 * 120.11681 * 359.97438 * 15 13 12 17 17 C 1.37974 * 119.99744 * 179.97438 * 16 15 13 18 18 C 1.38253 * 120.22444 * 0.02562 * 17 16 15 19 19 C 1.38944 * 120.22357 * 359.97438 * 18 17 16 20 20 N 1.39958 * 120.00431 * 179.97438 * 19 18 17 21 21 C 1.34769 * 120.00276 * 146.76530 * 20 19 18 22 22 O 1.21289 * 120.00089 * 354.73212 * 21 20 19 23 23 C 1.50706 * 119.99860 * 174.72714 * 21 20 19 24 24 H 1.08997 * 109.99072 * 56.08837 * 23 21 20 25 25 C 1.54100 * 109.87996 * 295.00023 * 23 21 20 26 26 C 1.54806 * 104.19159 * 238.54583 * 25 23 21 27 27 C 1.55004 * 102.12374 * 339.10695 * 26 25 23 28 28 O 1.43744 * 109.87546 * 177.17343 * 23 21 20 29 29 C 1.38641 * 120.00054 * 0.27331 * 19 18 17 30 30 H 1.09005 * 109.46649 * 60.00749 * 1 2 3 31 31 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47431 * 300.00423 * 1 2 3 33 33 H 0.97006 * 119.99798 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99951 * 95.00657 * 12 2 1 35 35 H 1.07994 * 119.99824 * 0.02562 * 16 15 13 36 36 H 1.08003 * 119.88948 * 180.02562 * 17 16 15 37 37 H 1.08001 * 119.89012 * 179.97438 * 18 17 16 38 38 H 0.97005 * 119.99661 * 326.77391 * 20 19 18 39 39 H 1.08998 * 110.48528 * 119.86861 * 25 23 21 40 40 H 1.08999 * 110.60136 * 357.27962 * 25 23 21 41 41 H 1.09001 * 110.90716 * 97.31684 * 26 25 23 42 42 H 1.08993 * 110.90857 * 220.88775 * 26 25 23 43 43 H 1.08992 * 110.61753 * 155.54243 * 27 26 25 44 44 H 1.09003 * 110.60896 * 278.54042 * 27 26 25 45 45 H 1.07996 * 120.11183 * 179.70051 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 1.8282 -2.5201 -4.0079 10 1 1.8281 -0.4196 -5.2203 11 1 3.8077 -1.1192 -4.0075 12 7 2.0183 -0.6905 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8574 1.1612 2.4118 15 6 2.6402 -0.7149 3.5644 16 6 2.9730 -2.0695 3.5045 17 6 3.4336 -2.7172 4.6323 18 6 3.5669 -2.0295 5.8242 19 6 3.2385 -0.6813 5.8943 20 7 3.3747 0.0104 7.1034 21 6 3.7198 1.3131 7.0994 22 8 4.0053 1.8617 6.0560 23 6 3.7508 2.0884 8.3914 24 1 4.4112 1.5964 9.1054 25 6 2.3286 2.1892 8.9763 26 6 2.0674 3.7116 9.0786 27 6 3.5054 4.2900 9.0693 28 8 4.2078 3.4289 8.1461 29 6 2.7699 -0.0225 4.7680 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.7090 1.1612 -3.4845 34 1 2.2490 -1.6316 1.1528 35 1 2.8706 -2.6101 2.5752 36 1 3.6908 -3.7651 4.5839 37 1 3.9276 -2.5420 6.7038 38 1 3.2209 -0.4481 7.9443 39 1 2.2884 1.7280 9.9630 40 1 1.6052 1.7220 8.3081 41 1 1.4995 4.0675 8.2190 42 1 1.5555 3.9567 10.0091 43 1 3.5030 5.3189 8.7097 44 1 3.9493 4.2306 10.0631 45 1 2.5095 1.0243 4.8216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:49 Heat of formation + Delta-G solvation = -86.158429 kcal Electronic energy + Delta-G solvation = -27845.277405 eV Core-core repulsion = 23827.824950 eV Total energy + Delta-G solvation = -4017.452454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02566 -39.74747 -38.76910 -37.61038 -34.95339 -34.76044 -32.63164 -32.36413 -31.05627 -30.83077 -29.23941 -28.37370 -25.22385 -24.44693 -23.90910 -22.55409 -22.13317 -21.05872 -20.47234 -19.50081 -18.43853 -17.81445 -16.90998 -16.57071 -16.28298 -15.83551 -15.69339 -15.24445 -15.15396 -14.82923 -14.36973 -14.12580 -14.09714 -13.98405 -13.86939 -13.45309 -13.04398 -12.66964 -12.38511 -12.25282 -12.14786 -11.86223 -11.71463 -11.66843 -11.49164 -11.33184 -11.06706 -10.92542 -10.71362 -10.53946 -10.39506 -10.29127 -10.19275 -9.73100 -9.08459 -9.01241 -8.86341 -8.51087 -8.24617 -7.85480 -6.08152 -4.17505 0.97823 1.32874 2.32516 2.50445 3.28720 3.33590 3.34355 3.36190 3.56863 3.96445 4.06279 4.22079 4.26063 4.32973 4.41420 4.53501 4.71963 4.84549 4.87818 4.92500 5.09423 5.21511 5.23683 5.24038 5.31998 5.33218 5.43192 5.49367 5.56641 5.61436 5.90879 6.14166 6.26041 6.35437 6.39788 6.53009 6.87224 6.94378 7.01452 7.11403 7.19314 7.49886 7.60743 7.73678 7.89382 7.96256 8.18838 8.69693 8.81924 9.15536 9.49680 10.97919 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.002460 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.488400 B =11378.135884 C =12336.017626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.540 3.460 14 O -0.545 6.545 15 C -0.100 4.100 16 C -0.102 4.102 17 C -0.108 4.108 18 C -0.131 4.131 19 C 0.133 3.867 20 N -0.672 5.672 21 C 0.505 3.495 22 O -0.483 6.483 23 C 0.065 3.935 24 H 0.097 0.903 25 C -0.149 4.149 26 C -0.155 4.155 27 C 0.044 3.956 28 O -0.345 6.345 29 C -0.067 4.067 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.015 0.985 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.409 0.591 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 -4.125 28.064 28.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.325 3.675 14 O -0.424 6.424 15 C -0.104 4.104 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.151 4.151 19 C 0.040 3.960 20 N -0.320 5.320 21 C 0.290 3.710 22 O -0.354 6.354 23 C 0.003 3.997 24 H 0.115 0.885 25 C -0.187 4.187 26 C -0.193 4.193 27 C -0.033 4.033 28 O -0.263 6.263 29 C -0.088 4.088 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.245 0.755 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.254 -2.579 27.009 27.326 hybrid contribution 0.235 -1.294 -0.248 1.338 sum 3.490 -3.873 26.760 27.264 Atomic orbital electron populations 1.22078 0.98365 0.99137 1.00962 1.18780 0.91086 0.94109 0.79804 0.93206 1.21171 1.32510 1.13252 0.90304 0.92102 1.24891 0.94821 0.94961 0.99041 1.69899 1.35819 1.22385 1.23968 0.86494 0.79196 0.79533 0.81786 1.20161 1.21136 1.20162 1.46474 1.64610 1.13512 1.10327 1.18194 0.79085 0.86820 0.83374 1.90744 1.51116 1.15554 1.85023 1.20215 1.01379 0.94037 0.94734 1.21410 0.98139 0.93587 0.99039 1.20849 0.99879 0.99975 0.91941 1.20939 1.02177 0.93035 0.98984 1.17546 1.00397 0.91665 0.86388 1.43357 1.69972 1.10724 1.07967 1.20701 0.77080 0.81733 0.91450 1.90853 1.43589 1.68155 1.32790 1.22569 0.96892 0.86561 0.93688 0.88532 1.22973 0.95118 0.98307 1.02311 1.23162 0.98134 0.94211 1.03771 1.23691 0.90388 0.95634 0.93543 1.89068 1.63686 1.14836 1.58720 1.21248 0.95670 1.01403 0.90515 0.89078 0.95433 0.96601 0.92515 0.77859 0.85114 0.85118 0.85591 0.75516 0.89296 0.89640 0.89822 0.89580 0.88233 0.91699 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.26 37.16 0.34 -3.44 16 2 C 0.26 7.02 2.56 -69.08 -0.18 6.84 16 3 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.53 -14.54 8.73 -34.44 -0.30 -14.84 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.70 -15.64 5.02 -55.88 -0.28 -15.92 16 13 C 0.54 12.13 7.74 -12.32 -0.10 12.03 16 14 O -0.55 -14.51 16.01 5.32 0.09 -14.42 16 15 C -0.10 -1.78 5.87 -104.99 -0.62 -2.40 16 16 C -0.10 -1.42 9.54 -39.16 -0.37 -1.79 16 17 C -0.11 -1.17 10.02 -39.67 -0.40 -1.57 16 18 C -0.13 -1.35 9.95 -39.31 -0.39 -1.74 16 19 C 0.13 1.72 6.27 -83.74 -0.53 1.19 16 20 N -0.67 -6.58 5.31 -9.89 -0.05 -6.63 16 21 C 0.50 6.33 6.69 -10.99 -0.07 6.26 16 22 O -0.48 -8.94 14.22 -14.03 -0.20 -9.14 16 23 C 0.06 0.57 3.85 -27.31 -0.11 0.46 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 25 C -0.15 -0.90 6.61 -25.21 -0.17 -1.07 16 26 C -0.16 -0.98 7.15 -24.72 -0.18 -1.16 16 27 C 0.04 0.32 7.73 38.22 0.30 0.62 16 28 O -0.35 -4.08 10.74 -54.81 -0.59 -4.67 16 29 C -0.07 -1.16 8.20 -38.98 -0.32 -1.48 16 30 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.39 7.37 6.57 -40.82 -0.27 7.10 16 35 H 0.13 1.62 6.40 -52.49 -0.34 1.29 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.41 2.12 8.82 -40.82 -0.36 1.76 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.59 7.70 -51.93 -0.40 0.19 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.15 2.93 6.02 -52.49 -0.32 2.61 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -37.43 375.39 -9.10 -46.54 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.16 Total: 7.76 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -3.17 Total: -0.35 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.29 Total: -47.39 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.70 Total: -28.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.43 -9.10 -46.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.622 kcal (2) G-P(sol) polarization free energy of solvation -37.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds