Wall clock time and date at job start Tue Mar 31 2020 18:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46872 * 2 1 4 4 C 1.50696 * 109.47350 * 239.99494 * 2 1 3 5 5 H 1.08004 * 120.00148 * 240.00144 * 4 2 1 6 6 C 1.37879 * 119.99860 * 60.00031 * 4 2 1 7 7 N 1.31514 * 119.99998 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99821 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46690 * 60.00291 * 8 6 4 10 10 H 1.48498 * 109.46899 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47159 * 299.99881 * 8 6 4 12 12 N 1.46497 * 109.46741 * 119.99365 * 2 1 3 13 13 C 1.34782 * 120.00374 * 275.00181 * 12 2 1 14 14 O 1.21553 * 119.99606 * 0.02562 * 13 12 2 15 15 C 1.47855 * 119.99879 * 180.02562 * 13 12 2 16 16 C 1.39617 * 120.11681 * 359.97438 * 15 13 12 17 17 C 1.37974 * 119.99744 * 179.97438 * 16 15 13 18 18 C 1.38253 * 120.22444 * 0.02562 * 17 16 15 19 19 C 1.38944 * 120.22357 * 359.97438 * 18 17 16 20 20 N 1.39958 * 120.00431 * 179.97438 * 19 18 17 21 21 C 1.34769 * 120.00276 * 146.76530 * 20 19 18 22 22 O 1.21289 * 120.00089 * 354.73212 * 21 20 19 23 23 C 1.50706 * 119.99860 * 174.72714 * 21 20 19 24 24 H 1.08997 * 109.99072 * 56.08837 * 23 21 20 25 25 C 1.54100 * 109.87996 * 295.00023 * 23 21 20 26 26 C 1.54806 * 104.19159 * 238.54583 * 25 23 21 27 27 C 1.55004 * 102.12374 * 339.10695 * 26 25 23 28 28 O 1.43744 * 109.87546 * 177.17343 * 23 21 20 29 29 C 1.38641 * 120.00054 * 0.27331 * 19 18 17 30 30 H 1.09005 * 109.46649 * 60.00749 * 1 2 3 31 31 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47431 * 300.00423 * 1 2 3 33 33 H 0.97006 * 119.99798 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99951 * 95.00657 * 12 2 1 35 35 H 1.07994 * 119.99824 * 0.02562 * 16 15 13 36 36 H 1.08003 * 119.88948 * 180.02562 * 17 16 15 37 37 H 1.08001 * 119.89012 * 179.97438 * 18 17 16 38 38 H 0.97005 * 119.99661 * 326.77391 * 20 19 18 39 39 H 1.08998 * 110.48528 * 119.86861 * 25 23 21 40 40 H 1.08999 * 110.60136 * 357.27962 * 25 23 21 41 41 H 1.09001 * 110.90716 * 97.31684 * 26 25 23 42 42 H 1.08993 * 110.90857 * 220.88775 * 26 25 23 43 43 H 1.08992 * 110.61753 * 155.54243 * 27 26 25 44 44 H 1.09003 * 110.60896 * 278.54042 * 27 26 25 45 45 H 1.07996 * 120.11183 * 179.70051 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 1.8282 -2.5201 -4.0079 10 1 1.8281 -0.4196 -5.2203 11 1 3.8077 -1.1192 -4.0075 12 7 2.0183 -0.6905 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8574 1.1612 2.4118 15 6 2.6402 -0.7149 3.5644 16 6 2.9730 -2.0695 3.5045 17 6 3.4336 -2.7172 4.6323 18 6 3.5669 -2.0295 5.8242 19 6 3.2385 -0.6813 5.8943 20 7 3.3747 0.0104 7.1034 21 6 3.7198 1.3131 7.0994 22 8 4.0053 1.8617 6.0560 23 6 3.7508 2.0884 8.3914 24 1 4.4112 1.5964 9.1054 25 6 2.3286 2.1892 8.9763 26 6 2.0674 3.7116 9.0786 27 6 3.5054 4.2900 9.0693 28 8 4.2078 3.4289 8.1461 29 6 2.7699 -0.0225 4.7680 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.7090 1.1612 -3.4845 34 1 2.2490 -1.6316 1.1528 35 1 2.8706 -2.6101 2.5752 36 1 3.6908 -3.7651 4.5839 37 1 3.9276 -2.5420 6.7038 38 1 3.2209 -0.4481 7.9443 39 1 2.2884 1.7280 9.9630 40 1 1.6052 1.7220 8.3081 41 1 1.4995 4.0675 8.2190 42 1 1.5555 3.9567 10.0091 43 1 3.5030 5.3189 8.7097 44 1 3.9493 4.2306 10.0631 45 1 2.5095 1.0243 4.8216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:48 Heat of formation + Delta-G solvation = -114.474305 kcal Electronic energy + Delta-G solvation = -27846.505273 eV Core-core repulsion = 23827.824950 eV Total energy + Delta-G solvation = -4018.680323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97463 -40.99945 -39.94870 -38.82128 -36.80483 -36.01982 -34.41347 -33.22622 -32.34751 -31.72242 -30.70716 -29.62311 -27.38913 -25.35185 -25.20057 -23.45398 -22.82909 -22.72251 -21.43006 -21.22787 -19.84090 -18.74767 -18.17813 -17.57234 -17.49428 -17.19878 -16.95707 -16.61626 -16.30816 -16.03160 -15.91773 -15.57939 -15.20330 -14.95345 -14.73668 -14.62858 -14.50044 -14.39048 -13.89226 -13.65027 -13.03314 -12.92716 -12.87133 -12.84219 -12.76272 -12.73160 -12.59821 -12.30041 -12.23917 -12.16740 -11.93215 -11.55709 -11.19571 -11.16974 -10.91864 -10.62300 -10.60662 -10.07792 -9.77753 -9.25237 -8.19738 -6.38607 -0.17263 0.24593 1.38910 1.43575 1.47245 1.54899 1.68979 1.95351 2.30739 2.52720 2.88042 2.95318 3.10463 3.35587 3.58467 3.78524 3.84091 3.91349 3.98317 4.12393 4.20779 4.22025 4.35261 4.42580 4.49222 4.68021 4.69003 4.74004 4.85915 4.86544 4.87746 4.95415 5.02846 5.10463 5.16837 5.26513 5.33840 5.38458 5.41238 5.54444 5.62512 5.73884 5.85436 5.93350 6.03833 6.34565 6.67466 6.86023 7.05376 7.27063 7.44620 8.87071 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.002460 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.488400 B =11378.135884 C =12336.017626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.008 1.008 4 C -0.549 4.549 5 H 0.077 0.923 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.979 3.021 9 H -0.259 1.259 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.693 5.693 13 C 0.534 3.466 14 O -0.605 6.605 15 C -0.133 4.133 16 C -0.100 4.100 17 C -0.092 4.092 18 C -0.100 4.100 19 C 0.129 3.871 20 N -0.650 5.650 21 C 0.497 3.503 22 O -0.558 6.558 23 C 0.065 3.935 24 H 0.140 0.860 25 C -0.142 4.142 26 C -0.156 4.156 27 C 0.037 3.963 28 O -0.394 6.394 29 C -0.095 4.095 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.007 0.993 33 H 0.266 0.734 34 H 0.406 0.594 35 H 0.145 0.855 36 H 0.181 0.819 37 H 0.182 0.818 38 H 0.436 0.564 39 H 0.135 0.865 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.118 0.882 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -8.764 31.199 32.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.010 0.990 4 C -0.587 4.587 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.803 3.197 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.342 5.342 13 C 0.322 3.678 14 O -0.488 6.488 15 C -0.136 4.136 16 C -0.120 4.120 17 C -0.110 4.110 18 C -0.120 4.120 19 C 0.035 3.965 20 N -0.299 5.299 21 C 0.285 3.715 22 O -0.433 6.433 23 C 0.005 3.995 24 H 0.157 0.843 25 C -0.180 4.180 26 C -0.194 4.194 27 C -0.038 4.038 28 O -0.312 6.312 29 C -0.116 4.116 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.076 0.924 34 H 0.243 0.757 35 H 0.162 0.838 36 H 0.198 0.802 37 H 0.199 0.801 38 H 0.277 0.723 39 H 0.154 0.846 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.136 0.864 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.535 -7.300 30.219 31.418 hybrid contribution -0.145 0.168 -1.100 1.122 sum 4.390 -7.132 29.119 30.300 Atomic orbital electron populations 1.21893 0.97983 0.99750 0.99487 1.18419 0.91412 0.91793 0.81843 0.98982 1.21490 1.32912 1.13759 0.90522 0.90488 1.25896 0.94770 0.95591 1.02558 1.70067 1.36930 1.23954 1.24800 0.85298 0.78558 0.78811 0.77067 1.18309 1.21115 1.19640 1.46175 1.64583 1.14202 1.09286 1.19041 0.77746 0.86324 0.84662 1.90696 1.53666 1.18352 1.86081 1.19826 1.05239 0.95968 0.92614 1.21621 0.97633 0.91500 1.01215 1.21411 0.97241 1.01928 0.90443 1.21542 0.98589 0.91176 1.00742 1.17677 0.99826 0.92946 0.86050 1.43194 1.68487 1.10019 1.08227 1.21666 0.75405 0.82354 0.92039 1.90835 1.47115 1.69725 1.35662 1.22879 0.99499 0.85253 0.91908 0.84303 1.23050 0.92766 0.98093 1.04070 1.23188 0.97487 0.94577 1.04134 1.23928 0.90863 0.94863 0.94154 1.89023 1.64877 1.16743 1.60607 1.21020 0.98280 0.99745 0.92601 0.91166 0.93521 0.97390 0.92445 0.75690 0.83778 0.80207 0.80115 0.72324 0.84648 0.91050 0.92698 0.86394 0.88927 0.88561 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.20 9.26 71.98 0.67 -6.54 16 2 C 0.27 15.15 2.56 44.25 0.11 15.26 16 3 H -0.01 -0.52 7.58 -2.39 -0.02 -0.54 16 4 C -0.55 -30.47 8.73 25.60 0.22 -30.25 16 5 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.98 11.32 21.45 0.24 -54.74 16 8 Si 0.98 43.15 29.54 68.60 2.03 45.18 16 9 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 N -0.69 -32.49 5.02 -448.97 -2.25 -34.74 16 13 C 0.53 25.98 7.74 86.79 0.67 26.65 16 14 O -0.60 -35.90 16.01 -3.88 -0.06 -35.96 16 15 C -0.13 -4.96 5.87 -20.10 -0.12 -5.08 16 16 C -0.10 -2.59 9.54 22.54 0.21 -2.38 16 17 C -0.09 -1.53 10.02 22.21 0.22 -1.30 16 18 C -0.10 -1.55 9.95 22.44 0.22 -1.33 16 19 C 0.13 3.14 6.27 38.11 0.24 3.38 16 20 N -0.65 -11.57 5.31 -303.60 -1.61 -13.19 16 21 C 0.50 12.74 6.69 87.66 0.59 13.33 16 22 O -0.56 -22.61 14.22 15.66 0.22 -22.39 16 23 C 0.07 1.07 3.85 30.22 0.12 1.19 16 24 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 25 C -0.14 -1.42 6.61 31.58 0.21 -1.21 16 26 C -0.16 -1.84 7.15 31.90 0.23 -1.62 16 27 C 0.04 0.53 7.73 72.67 0.56 1.10 16 28 O -0.39 -9.57 10.74 -130.26 -1.40 -10.97 16 29 C -0.09 -3.49 8.20 22.66 0.19 -3.30 16 30 H 0.07 4.11 6.07 -2.38 -0.01 4.10 16 31 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 34 H 0.41 15.60 6.57 -92.71 -0.61 14.99 16 35 H 0.14 3.23 6.40 -2.91 -0.02 3.21 16 36 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.44 2.74 8.82 -92.70 -0.82 1.92 16 39 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.07 0.93 7.70 -2.39 -0.02 0.91 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.10 4.53 6.02 -2.91 -0.02 4.51 16 Total: -1.00 -95.14 375.39 1.57 -93.57 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -0.39 Total: 24.22 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 4.79 Total: 9.02 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -3.62 Total: -102.67 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -1.24 Total: -69.32 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -95.14 1.57 -93.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.900 kcal (2) G-P(sol) polarization free energy of solvation -95.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds