Wall clock time and date at job start Tue Mar 31 2020 18:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35977 * 116.99832 * 2 1 4 4 C 1.38558 * 120.08266 * 0.24622 * 3 2 1 5 5 C 1.38239 * 120.01480 * 180.30582 * 4 3 2 6 6 C 1.38277 * 120.17780 * 359.69629 * 5 4 3 7 7 C 1.38190 * 120.16522 * 0.02628 * 6 5 4 8 8 C 1.38718 * 119.98903 * 359.97438 * 7 6 5 9 9 N 1.40126 * 120.09511 * 179.97438 * 8 7 6 10 10 C 1.46761 * 124.34620 * 270.04689 * 9 8 7 11 11 C 1.54482 * 105.47314 * 196.99160 * 10 9 8 12 12 H 1.08998 * 110.99566 * 92.71737 * 11 10 9 13 13 C 1.50700 * 110.97113 * 216.46665 * 11 10 9 14 14 O 1.21283 * 119.99803 * 353.83264 * 13 11 10 15 15 N 1.34777 * 119.99675 * 174.11139 * 13 11 10 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 11 17 17 H 1.09001 * 109.47884 * 324.99780 * 16 15 13 18 18 C 1.53008 * 109.47335 * 84.99977 * 16 15 13 19 19 C 1.50701 * 109.47133 * 204.99448 * 16 15 13 20 20 H 1.08002 * 120.00022 * 0.02562 * 19 16 15 21 21 C 1.37879 * 120.00302 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99643 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 120.00038 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.47579 * 59.99607 * 23 21 19 25 25 H 1.48496 * 109.47047 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46945 * 299.99598 * 23 21 19 27 27 C 1.54625 * 101.76312 * 334.58631 * 11 10 9 28 28 C 1.34417 * 124.34816 * 90.02275 * 9 8 7 29 29 O 1.21288 * 124.94383 * 359.58289 * 28 9 8 30 30 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47355 * 300.00164 * 1 2 3 32 32 H 1.09005 * 109.46819 * 60.01071 * 1 2 3 33 33 H 1.07998 * 119.99433 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.91196 * 179.72680 * 5 4 3 35 35 H 1.08006 * 119.91425 * 180.02562 * 6 5 4 36 36 H 1.08009 * 120.00928 * 180.02562 * 7 6 5 37 37 H 1.09001 * 110.24593 * 77.99181 * 10 9 8 38 38 H 1.09005 * 110.24736 * 315.99310 * 10 9 8 39 39 H 0.97000 * 119.99894 * 359.71837 * 15 13 11 40 40 H 1.08998 * 109.46811 * 299.99762 * 18 16 15 41 41 H 1.08994 * 109.47201 * 59.99659 * 18 16 15 42 42 H 1.08995 * 109.47273 * 180.02562 * 18 16 15 43 43 H 0.96996 * 119.99343 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.48454 * 143.47382 * 27 11 10 45 45 H 1.08996 * 110.48987 * 265.98377 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3747 0.0052 5 6 1.9223 3.6057 -0.0012 6 6 3.3030 3.6808 -0.0065 7 6 4.0612 2.5255 -0.0058 8 6 3.4373 1.2866 0.0006 9 7 4.2040 0.1137 0.0006 10 6 4.6525 -0.5824 -1.2110 11 6 5.0605 -1.9979 -0.7459 12 1 4.2269 -2.6943 -0.8370 13 6 6.2595 -2.4930 -1.5130 14 8 6.6968 -1.8441 -2.4396 15 7 6.8425 -3.6596 -1.1727 16 6 8.0044 -4.1437 -1.9222 17 1 7.8995 -3.8700 -2.9721 18 6 9.2769 -3.5112 -1.3550 19 6 8.0915 -5.6433 -1.8003 20 1 7.3548 -6.1818 -1.2226 21 6 9.1118 -6.3277 -2.4261 22 7 10.0086 -5.6719 -3.1299 23 14 9.2193 -8.1865 -2.2756 24 1 7.9845 -8.8002 -2.8269 25 1 10.3971 -8.6773 -3.0352 26 1 9.3615 -8.5598 -0.8452 27 6 5.4163 -1.7517 0.7385 28 6 4.6234 -0.5181 1.1105 29 8 4.3994 -0.1521 2.2449 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 0.2147 2.3196 0.0096 34 1 1.3337 4.5112 -0.0017 35 1 3.7900 4.6448 -0.0110 36 1 5.1396 2.5871 -0.0095 37 1 5.5085 -0.0673 -1.6469 38 1 3.8393 -0.6428 -1.9343 39 1 6.4927 -4.1785 -0.4315 40 1 9.2139 -2.4266 -1.4432 41 1 9.3819 -3.7849 -0.3052 42 1 10.1413 -3.8711 -1.9129 43 1 10.7265 -6.1535 -3.5699 44 1 5.1102 -2.6006 1.3500 45 1 6.4850 -1.5685 0.8494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:09 Heat of formation + Delta-G solvation = -74.681464 kcal Electronic energy + Delta-G solvation = -28380.778942 eV Core-core repulsion = 24363.824166 eV Total energy + Delta-G solvation = -4016.954776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18936 -39.93874 -38.70314 -37.60382 -36.21028 -34.83510 -33.32909 -32.32488 -30.51935 -29.73965 -28.62530 -27.62810 -27.48829 -25.29036 -23.89163 -22.72117 -22.42681 -20.84332 -19.93495 -19.38609 -18.36040 -17.61446 -17.25333 -16.60386 -16.25361 -15.97250 -15.42904 -15.32027 -15.18117 -14.90965 -14.61900 -14.42089 -14.15555 -13.94790 -13.64597 -13.21153 -12.92739 -12.89851 -12.81699 -12.43077 -12.42704 -11.94347 -11.67994 -11.55668 -11.43629 -11.42350 -11.26337 -11.10009 -10.97420 -10.75854 -10.37210 -10.25976 -10.02670 -9.23236 -9.11350 -9.07603 -8.90791 -8.58033 -8.44982 -7.99213 -6.15042 -4.24609 0.92510 1.13101 2.53798 2.79957 3.00586 3.21117 3.24431 3.29855 3.30860 3.38698 3.91745 4.31114 4.34500 4.51152 4.54271 4.59592 4.79080 4.84029 4.88718 4.97170 5.03371 5.08600 5.17674 5.17920 5.25773 5.42208 5.48984 5.53397 5.64288 5.79266 5.90774 5.97328 6.07053 6.18088 6.34869 6.61291 6.78864 6.92256 6.96399 7.10755 7.13630 7.38509 7.50382 7.65517 7.87086 8.11544 8.16572 8.58242 8.72735 9.02138 9.42879 10.90858 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023328 B = 0.002478 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.973236 B =11298.828483 C =11664.611535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.136 3.864 4 C -0.206 4.206 5 C -0.076 4.076 6 C -0.150 4.150 7 C -0.070 4.070 8 C 0.115 3.885 9 N -0.571 5.571 10 C 0.125 3.875 11 C -0.123 4.123 12 H 0.115 0.885 13 C 0.513 3.487 14 O -0.550 6.550 15 N -0.703 5.703 16 C 0.264 3.736 17 H 0.050 0.950 18 C -0.148 4.148 19 C -0.535 4.535 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.902 3.098 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.141 4.141 28 C 0.529 3.471 29 O -0.526 6.526 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.390 0.610 40 H 0.015 0.985 41 H 0.027 0.973 42 H 0.090 0.910 43 H 0.265 0.735 44 H 0.112 0.888 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.846 14.726 5.938 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.088 3.912 4 C -0.225 4.225 5 C -0.094 4.094 6 C -0.169 4.169 7 C -0.089 4.089 8 C 0.025 3.975 9 N -0.302 5.302 10 C 0.003 3.997 11 C -0.145 4.145 12 H 0.133 0.867 13 C 0.297 3.703 14 O -0.429 6.429 15 N -0.350 5.350 16 C 0.163 3.837 17 H 0.067 0.933 18 C -0.206 4.206 19 C -0.574 4.574 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.182 4.182 28 C 0.318 3.682 29 O -0.402 6.402 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.223 0.777 40 H 0.034 0.966 41 H 0.046 0.954 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.130 0.870 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.388 15.149 5.743 23.765 hybrid contribution -0.381 -1.185 0.347 1.292 sum -17.769 13.964 6.089 23.405 Atomic orbital electron populations 1.23096 0.78343 1.04191 1.01243 1.86168 1.21303 1.26288 1.88147 1.19329 0.91387 0.84879 0.95562 1.21156 1.00088 0.91945 1.09326 1.21004 0.94684 0.96988 0.96726 1.20972 0.93766 0.98149 1.04014 1.21250 1.00642 0.90614 0.96407 1.16701 0.86297 0.86134 1.08408 1.45478 1.52298 1.24211 1.08178 1.22046 1.00992 0.90753 0.85909 1.22281 0.99339 0.97948 0.94946 0.86696 1.19863 0.83830 0.82264 0.84371 1.90674 1.65108 1.56873 1.30203 1.46517 1.32770 1.20705 1.34999 1.18773 0.79841 0.92990 0.92102 0.93260 1.22085 1.02423 0.96490 0.99636 1.21174 1.12045 0.90866 1.33302 0.92070 1.24885 0.95228 0.98845 0.94711 1.69889 1.14426 1.35743 1.31998 0.86503 0.77619 0.84699 0.78241 1.20179 1.21142 1.20131 1.22312 1.02491 0.97632 0.95745 1.20935 0.78521 0.84779 0.83991 1.90712 1.58436 1.70016 1.20993 0.88067 0.92634 0.92563 0.85034 0.85429 0.85242 0.84840 0.88770 0.89869 0.77713 0.96633 0.95378 0.89112 0.92482 0.87009 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.63 10.24 -19.67 -0.20 -3.83 16 3 C 0.14 1.64 6.70 -39.07 -0.26 1.38 16 4 C -0.21 -1.92 9.04 -39.46 -0.36 -2.28 16 5 C -0.08 -0.63 10.04 -39.57 -0.40 -1.03 16 6 C -0.15 -1.37 10.04 -39.58 -0.40 -1.77 16 7 C -0.07 -0.80 9.96 -39.42 -0.39 -1.19 16 8 C 0.12 1.53 5.40 -83.49 -0.45 1.07 16 9 N -0.57 -7.93 2.70 -112.12 -0.30 -8.24 16 10 C 0.12 1.66 6.60 -3.12 -0.02 1.64 16 11 C -0.12 -1.64 3.54 -90.14 -0.32 -1.96 16 12 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.51 9.27 7.03 -10.98 -0.08 9.20 16 14 O -0.55 -12.04 15.23 5.55 0.08 -11.95 16 15 N -0.70 -13.56 5.02 -54.93 -0.28 -13.83 16 16 C 0.26 6.45 2.56 -69.08 -0.18 6.27 16 17 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 18 C -0.15 -3.55 9.26 37.16 0.34 -3.21 16 19 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 21 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -24.41 11.32 55.43 0.63 -23.78 16 23 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 27 C -0.14 -1.81 6.37 -26.74 -0.17 -1.98 16 28 C 0.53 8.05 7.99 -10.86 -0.09 7.96 16 29 O -0.53 -9.72 17.71 5.55 0.10 -9.62 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 32 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 33 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 37 H 0.09 1.37 7.06 -51.93 -0.37 1.00 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.39 6.45 8.54 -40.82 -0.35 6.10 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.11 1.48 7.89 -51.93 -0.41 1.07 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -33.43 379.29 -7.75 -41.18 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.31 Total: 6.23 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.17 Total: 2.89 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.05 Total: -45.85 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.02 Total: -25.41 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.43 -7.75 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.501 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds