Wall clock time and date at job start Tue Mar 31 2020 18:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35977 * 116.99832 * 2 1 4 4 C 1.38558 * 120.08266 * 0.24622 * 3 2 1 5 5 C 1.38239 * 120.01480 * 180.30582 * 4 3 2 6 6 C 1.38277 * 120.17780 * 359.69629 * 5 4 3 7 7 C 1.38190 * 120.16522 * 0.02628 * 6 5 4 8 8 C 1.38718 * 119.98903 * 359.97438 * 7 6 5 9 9 N 1.40126 * 120.09511 * 179.97438 * 8 7 6 10 10 C 1.46761 * 124.34620 * 270.04689 * 9 8 7 11 11 C 1.54482 * 105.47314 * 196.99160 * 10 9 8 12 12 H 1.08998 * 110.99566 * 92.71737 * 11 10 9 13 13 C 1.50700 * 110.97113 * 216.46665 * 11 10 9 14 14 O 1.21283 * 119.99803 * 353.83264 * 13 11 10 15 15 N 1.34777 * 119.99675 * 174.11139 * 13 11 10 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 11 17 17 H 1.09001 * 109.47884 * 324.99780 * 16 15 13 18 18 C 1.53008 * 109.47335 * 84.99977 * 16 15 13 19 19 C 1.50701 * 109.47133 * 204.99448 * 16 15 13 20 20 H 1.08002 * 120.00022 * 0.02562 * 19 16 15 21 21 C 1.37879 * 120.00302 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99643 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 120.00038 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.47579 * 59.99607 * 23 21 19 25 25 H 1.48496 * 109.47047 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46945 * 299.99598 * 23 21 19 27 27 C 1.54625 * 101.76312 * 334.58631 * 11 10 9 28 28 C 1.34417 * 124.34816 * 90.02275 * 9 8 7 29 29 O 1.21288 * 124.94383 * 359.58289 * 28 9 8 30 30 H 1.09003 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47355 * 300.00164 * 1 2 3 32 32 H 1.09005 * 109.46819 * 60.01071 * 1 2 3 33 33 H 1.07998 * 119.99433 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.91196 * 179.72680 * 5 4 3 35 35 H 1.08006 * 119.91425 * 180.02562 * 6 5 4 36 36 H 1.08009 * 120.00928 * 180.02562 * 7 6 5 37 37 H 1.09001 * 110.24593 * 77.99181 * 10 9 8 38 38 H 1.09005 * 110.24736 * 315.99310 * 10 9 8 39 39 H 0.97000 * 119.99894 * 359.71837 * 15 13 11 40 40 H 1.08998 * 109.46811 * 299.99762 * 18 16 15 41 41 H 1.08994 * 109.47201 * 59.99659 * 18 16 15 42 42 H 1.08995 * 109.47273 * 180.02562 * 18 16 15 43 43 H 0.96996 * 119.99343 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.48454 * 143.47382 * 27 11 10 45 45 H 1.08996 * 110.48987 * 265.98377 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3747 0.0052 5 6 1.9223 3.6057 -0.0012 6 6 3.3030 3.6808 -0.0065 7 6 4.0612 2.5255 -0.0058 8 6 3.4373 1.2866 0.0006 9 7 4.2040 0.1137 0.0006 10 6 4.6525 -0.5824 -1.2110 11 6 5.0605 -1.9979 -0.7459 12 1 4.2269 -2.6943 -0.8370 13 6 6.2595 -2.4930 -1.5130 14 8 6.6968 -1.8441 -2.4396 15 7 6.8425 -3.6596 -1.1727 16 6 8.0044 -4.1437 -1.9222 17 1 7.8995 -3.8700 -2.9721 18 6 9.2769 -3.5112 -1.3550 19 6 8.0915 -5.6433 -1.8003 20 1 7.3548 -6.1818 -1.2226 21 6 9.1118 -6.3277 -2.4261 22 7 10.0086 -5.6719 -3.1299 23 14 9.2193 -8.1865 -2.2756 24 1 7.9845 -8.8002 -2.8269 25 1 10.3971 -8.6773 -3.0352 26 1 9.3615 -8.5598 -0.8452 27 6 5.4163 -1.7517 0.7385 28 6 4.6234 -0.5181 1.1105 29 8 4.3994 -0.1521 2.2449 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 0.2147 2.3196 0.0096 34 1 1.3337 4.5112 -0.0017 35 1 3.7900 4.6448 -0.0110 36 1 5.1396 2.5871 -0.0095 37 1 5.5085 -0.0673 -1.6469 38 1 3.8393 -0.6428 -1.9343 39 1 6.4927 -4.1785 -0.4315 40 1 9.2139 -2.4266 -1.4432 41 1 9.3819 -3.7849 -0.3052 42 1 10.1413 -3.8711 -1.9129 43 1 10.7265 -6.1535 -3.5699 44 1 5.1102 -2.6006 1.3500 45 1 6.4850 -1.5685 0.8494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:08 Heat of formation + Delta-G solvation = -96.605901 kcal Electronic energy + Delta-G solvation = -28381.729657 eV Core-core repulsion = 24363.824166 eV Total energy + Delta-G solvation = -4017.905491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23287 -40.93575 -40.10300 -38.37946 -37.46620 -36.62264 -34.56207 -33.98889 -31.32326 -31.03233 -29.97515 -28.77707 -28.11505 -27.30612 -25.11411 -23.74133 -23.16625 -22.51795 -21.00716 -20.92026 -19.30602 -18.93580 -18.26519 -18.01864 -17.26487 -17.11580 -16.87487 -16.55185 -16.19779 -16.06570 -15.79768 -15.71574 -15.33979 -14.79726 -14.76459 -14.64195 -14.38672 -14.29643 -13.95288 -13.58356 -13.54796 -13.07231 -13.00595 -12.82774 -12.72168 -12.65420 -12.55541 -12.40791 -12.23624 -12.13317 -12.09961 -12.05164 -11.25304 -11.08169 -10.71150 -10.54357 -10.02389 -9.95602 -9.73788 -9.22624 -8.14941 -6.31838 0.14232 0.37360 1.37991 1.47699 1.49010 1.56652 1.72844 1.80079 2.30629 2.35265 2.54206 2.67502 3.15757 3.17998 3.40760 3.81983 3.83591 3.85427 3.94279 4.19833 4.23740 4.32709 4.35979 4.37164 4.46183 4.49570 4.59526 4.69962 4.71002 4.75286 4.80347 4.88447 4.96375 5.13390 5.21577 5.28611 5.44965 5.46885 5.54594 5.63187 5.72270 5.76407 5.90133 5.92856 6.13219 6.36701 6.75983 6.94803 7.04333 7.34828 7.54126 8.90979 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023328 B = 0.002478 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.973236 B =11298.828483 C =11664.611535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.119 3.881 4 C -0.205 4.205 5 C -0.069 4.069 6 C -0.151 4.151 7 C -0.088 4.088 8 C 0.072 3.928 9 N -0.563 5.563 10 C 0.128 3.872 11 C -0.104 4.104 12 H 0.146 0.854 13 C 0.516 3.484 14 O -0.590 6.590 15 N -0.698 5.698 16 C 0.271 3.729 17 H 0.002 0.998 18 C -0.135 4.135 19 C -0.546 4.546 20 H 0.075 0.925 21 C 0.015 3.985 22 N -0.918 5.918 23 Si 0.970 3.030 24 H -0.270 1.270 25 H -0.289 1.289 26 H -0.265 1.265 27 C -0.133 4.133 28 C 0.524 3.476 29 O -0.565 6.565 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.407 0.593 40 H 0.014 0.986 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.265 0.735 44 H 0.138 0.862 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.255 14.732 6.941 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.072 3.928 4 C -0.224 4.224 5 C -0.087 4.087 6 C -0.169 4.169 7 C -0.107 4.107 8 C -0.018 4.018 9 N -0.292 5.292 10 C 0.006 3.994 11 C -0.126 4.126 12 H 0.163 0.837 13 C 0.302 3.698 14 O -0.472 6.472 15 N -0.346 5.346 16 C 0.168 3.832 17 H 0.020 0.980 18 C -0.194 4.194 19 C -0.584 4.584 20 H 0.093 0.907 21 C -0.185 4.185 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.195 1.195 25 H -0.215 1.215 26 H -0.190 1.190 27 C -0.173 4.173 28 C 0.314 3.686 29 O -0.444 6.444 30 H 0.132 0.868 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.146 0.854 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.243 0.757 40 H 0.033 0.967 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.156 0.844 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.838 15.161 6.754 25.866 hybrid contribution 0.297 -1.055 -0.016 1.096 sum -19.542 14.105 6.738 25.025 Atomic orbital electron populations 1.23366 0.76257 1.05527 1.02440 1.86114 1.23583 1.26613 1.88277 1.19508 0.91188 0.85933 0.96149 1.21528 1.01393 0.91382 1.08127 1.21468 0.94583 0.98022 0.94591 1.21317 0.94393 0.98304 1.02892 1.21390 1.00817 0.91166 0.97351 1.17120 0.87286 0.86233 1.11121 1.45475 1.51678 1.24357 1.07684 1.21971 1.00785 0.90504 0.86097 1.22138 0.97653 0.98341 0.94426 0.83672 1.20520 0.84340 0.81172 0.83810 1.90664 1.66458 1.57857 1.32186 1.46225 1.31788 1.21460 1.35168 1.18344 0.81648 0.92955 0.90269 0.98000 1.21913 1.01453 0.96205 0.99859 1.21537 1.12208 0.91516 1.33142 0.90668 1.25769 0.94949 1.03453 0.94369 1.70045 1.15076 1.37498 1.32973 0.85433 0.77460 0.79078 0.78577 1.19542 1.21456 1.18966 1.22321 1.02025 0.97654 0.95327 1.21259 0.78372 0.85296 0.83721 1.90680 1.60132 1.71203 1.22376 0.86818 0.91701 0.90980 0.82389 0.81862 0.82779 0.85364 0.90414 0.88777 0.75711 0.96739 0.94033 0.91650 0.92626 0.84376 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.52 10.24 -93.30 -0.96 -8.47 16 3 C 0.12 2.77 6.70 22.60 0.15 2.92 16 4 C -0.21 -3.36 9.04 22.35 0.20 -3.16 16 5 C -0.07 -0.95 10.04 22.28 0.22 -0.73 16 6 C -0.15 -2.49 10.04 22.27 0.22 -2.27 16 7 C -0.09 -2.02 9.96 22.37 0.22 -1.80 16 8 C 0.07 1.92 5.40 38.19 0.21 2.13 16 9 N -0.56 -15.70 2.70 -627.24 -1.69 -17.40 16 10 C 0.13 3.41 6.60 86.83 0.57 3.98 16 11 C -0.10 -2.65 3.54 -10.48 -0.04 -2.69 16 12 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 13 C 0.52 18.55 7.03 87.66 0.62 19.16 16 14 O -0.59 -26.56 15.23 -3.04 -0.05 -26.61 16 15 N -0.70 -26.55 5.02 -446.08 -2.24 -28.80 16 16 C 0.27 13.43 2.56 44.25 0.11 13.55 16 17 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 18 C -0.14 -6.64 9.26 71.98 0.67 -5.98 16 19 C -0.55 -27.84 8.73 25.60 0.22 -27.61 16 20 H 0.08 3.54 7.74 -2.91 -0.02 3.52 16 21 C 0.01 0.77 5.30 84.65 0.45 1.22 16 22 N -0.92 -51.74 11.32 21.45 0.24 -51.50 16 23 Si 0.97 41.14 29.54 68.60 2.03 43.16 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 27 C -0.13 -3.25 6.37 30.59 0.19 -3.06 16 28 C 0.52 15.87 7.99 87.90 0.70 16.58 16 29 O -0.57 -21.09 17.71 -3.05 -0.05 -21.14 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 0.66 7.65 -2.39 -0.02 0.65 16 32 H 0.07 0.64 7.68 -2.38 -0.02 0.62 16 33 H 0.16 1.62 6.30 -2.91 -0.02 1.60 16 34 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.08 2.34 7.06 -2.39 -0.02 2.33 16 38 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.41 12.72 8.54 -92.71 -0.79 11.93 16 40 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 3.55 6.07 -2.39 -0.01 3.54 16 43 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.11 2.80 7.89 -2.39 -0.02 2.78 16 Total: -1.00 -75.10 379.29 3.35 -71.75 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.23 Total: 25.41 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 5.84 Total: 13.59 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -3.69 Total: -97.69 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -1.06 Total: -56.23 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -75.10 3.35 -71.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.857 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds