Wall clock time and date at job start Tue Mar 31 2020 18:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47026 * 2 1 4 4 C 1.50703 * 109.46938 * 120.00206 * 2 1 3 5 5 H 1.08001 * 120.00253 * 120.00288 * 4 2 1 6 6 C 1.37881 * 119.99573 * 299.99443 * 4 2 1 7 7 N 1.31514 * 120.00109 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99863 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46728 * 60.00072 * 8 6 4 10 10 H 1.48494 * 109.46935 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46961 * 300.00508 * 8 6 4 12 12 N 1.46500 * 109.46989 * 239.99486 * 2 1 3 13 13 C 1.34782 * 119.99423 * 85.00578 * 12 2 1 14 14 O 1.21278 * 120.00377 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99510 * 179.97438 * 13 12 2 16 16 O 1.42910 * 109.47075 * 179.97438 * 15 13 12 17 17 C 1.35965 * 116.99928 * 180.02562 * 16 15 13 18 18 C 1.38726 * 119.98334 * 180.02562 * 17 16 15 19 19 C 1.38086 * 120.01365 * 180.02562 * 18 17 16 20 20 C 1.38844 * 119.98585 * 359.97438 * 19 18 17 21 21 N 1.40115 * 120.01379 * 180.02562 * 20 19 18 22 22 C 1.46763 * 124.34925 * 354.19505 * 21 20 19 23 23 C 1.54474 * 105.47359 * 197.01610 * 22 21 20 24 24 C 1.54627 * 101.76694 * 334.58429 * 23 22 21 25 25 C 1.34413 * 124.34862 * 173.89307 * 21 20 19 26 26 O 1.21297 * 124.94653 * 359.58049 * 25 21 20 27 27 C 1.38844 * 119.97411 * 0.27374 * 20 19 18 28 28 C 1.38093 * 119.97932 * 359.47314 * 27 20 19 29 29 H 1.08996 * 109.46748 * 60.00265 * 1 2 3 30 30 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46980 * 299.99939 * 1 2 3 32 32 H 0.97003 * 120.00126 * 179.97438 * 7 6 4 33 33 H 0.96995 * 120.00529 * 265.00234 * 12 2 1 34 34 H 1.09003 * 109.47539 * 59.99858 * 15 13 12 35 35 H 1.08999 * 109.47353 * 299.99767 * 15 13 12 36 36 H 1.07999 * 119.99305 * 0.02562 * 18 17 16 37 37 H 1.08002 * 120.00766 * 179.97438 * 19 18 17 38 38 H 1.08996 * 110.24896 * 316.01822 * 22 21 20 39 39 H 1.09008 * 110.24564 * 77.92562 * 22 21 20 40 40 H 1.09005 * 110.97191 * 92.70371 * 23 22 21 41 41 H 1.09007 * 110.96913 * 216.46671 * 23 22 21 42 42 H 1.09000 * 110.48590 * 143.47269 * 24 23 22 43 43 H 1.08998 * 110.48595 * 265.98574 * 24 23 22 44 44 H 1.07992 * 120.00938 * 179.72193 * 27 20 19 45 45 H 1.08001 * 119.99137 * 180.22707 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8269 -0.4198 5.2204 11 1 1.8279 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7287 -3.5874 16 8 2.6975 0.1894 -4.6816 17 6 3.1320 -0.2950 -5.8753 18 6 3.2032 0.5425 -6.9789 19 6 3.6439 0.0511 -8.1918 20 6 4.0163 -1.2816 -8.3065 21 7 4.4641 -1.7807 -9.5367 22 6 4.4628 -1.0172 -10.7901 23 6 4.6127 -2.0677 -11.9128 24 6 5.3277 -3.2212 -11.1718 25 6 4.9554 -3.0184 -9.7195 26 8 5.0796 -3.8524 -8.8475 27 6 3.9399 -2.1206 -7.2029 28 6 3.5040 -1.6266 -5.9893 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7082 1.1610 3.4844 33 1 2.2490 -1.6318 -1.1526 34 1 1.9777 -1.5510 -3.8325 35 1 3.6492 -1.1205 -3.3978 36 1 2.9139 1.5792 -6.8894 37 1 3.6989 0.7032 -9.0510 38 1 3.5226 -0.4773 -10.9019 39 1 5.3014 -0.3211 -10.8086 40 1 3.6378 -2.3862 -12.2818 41 1 5.2297 -1.6845 -12.7256 42 1 4.9675 -4.1857 -11.5297 43 1 6.4074 -3.1464 -11.3009 44 1 4.2251 -3.1583 -7.2926 45 1 3.4479 -2.2782 -5.1299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:54 Heat of formation + Delta-G solvation = -73.526557 kcal Electronic energy + Delta-G solvation = -27072.753968 eV Core-core repulsion = 23055.849273 eV Total energy + Delta-G solvation = -4016.904695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40404 -40.05091 -38.72199 -37.36770 -36.76935 -34.78782 -33.07702 -32.44710 -31.27821 -29.87826 -28.69245 -28.18738 -27.15975 -25.26470 -23.62121 -23.12503 -21.88638 -20.97586 -20.09473 -19.51013 -18.36406 -17.80166 -17.40588 -17.18872 -16.26329 -16.11082 -15.67633 -15.29957 -14.98419 -14.77363 -14.35105 -14.24146 -14.18076 -14.09897 -13.81718 -13.64624 -13.45333 -13.19506 -12.77072 -12.61758 -12.40960 -12.30081 -12.03949 -11.75980 -11.64675 -11.27898 -11.23194 -11.09851 -10.95178 -10.74301 -10.34587 -10.24763 -9.98134 -9.94247 -9.20288 -9.09766 -9.06629 -8.57156 -7.98623 -7.73404 -6.13672 -4.23492 1.07576 1.19597 2.22141 2.41386 2.94936 3.24408 3.25957 3.30726 3.32344 3.63402 3.73585 3.85545 4.18711 4.21427 4.37993 4.40431 4.67569 4.76892 4.84122 4.90211 4.96407 5.09856 5.12683 5.18150 5.19850 5.20151 5.24705 5.35480 5.36038 5.40722 5.64035 5.88797 5.98133 6.22997 6.29259 6.66066 6.74552 6.80418 6.94270 7.12010 7.33037 7.39999 7.54127 7.66511 7.67282 7.88577 8.12370 8.57952 8.74491 9.03516 9.43709 10.92244 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.001839 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.852640 B =15217.915416 C =15925.131144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.503 3.497 14 O -0.532 6.532 15 C 0.039 3.961 16 O -0.286 6.286 17 C 0.116 3.884 18 C -0.124 4.124 19 C -0.115 4.115 20 C 0.115 3.885 21 N -0.556 5.556 22 C 0.094 3.906 23 C -0.131 4.131 24 C -0.153 4.153 25 C 0.512 3.488 26 O -0.514 6.514 27 C -0.112 4.112 28 C -0.183 4.183 29 H 0.015 0.985 30 H 0.027 0.973 31 H 0.091 0.909 32 H 0.265 0.735 33 H 0.390 0.610 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.156 0.844 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 -6.324 -30.264 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.355 5.355 13 C 0.286 3.714 14 O -0.409 6.409 15 C -0.040 4.040 16 O -0.198 6.198 17 C 0.069 3.931 18 C -0.143 4.143 19 C -0.135 4.135 20 C 0.023 3.977 21 N -0.281 5.281 22 C -0.028 4.028 23 C -0.169 4.169 24 C -0.193 4.193 25 C 0.301 3.699 26 O -0.389 6.389 27 C -0.132 4.132 28 C -0.203 4.203 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.173 0.827 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.096 -5.576 -29.606 30.951 hybrid contribution 0.456 -1.086 0.901 1.483 sum 7.551 -6.662 -28.705 30.420 Atomic orbital electron populations 1.22091 0.98309 0.99216 1.01045 1.18795 0.91130 0.94044 0.79554 0.93202 1.21162 1.32685 1.13326 0.90227 0.92030 1.24894 0.94783 0.94954 0.99079 1.69892 1.35661 1.22369 1.24070 0.86479 0.79167 0.79552 0.81719 1.20157 1.21108 1.20150 1.46430 1.65395 1.13644 1.09994 1.19852 0.79639 0.87725 0.84148 1.90702 1.49896 1.15685 1.84658 1.22663 1.02591 0.92608 0.86173 1.86207 1.80515 1.37364 1.15696 1.19132 0.95463 0.92335 0.86148 1.20224 1.03729 1.00313 0.90049 1.20514 1.02082 0.93125 0.97774 1.17628 1.02093 0.93270 0.84702 1.45733 1.59946 1.14487 1.07890 1.22261 1.03643 0.94979 0.81929 1.22621 1.02324 0.94674 0.97279 1.22337 1.03325 1.01495 0.92170 1.21074 0.76412 0.80972 0.91395 1.90649 1.53633 1.46232 1.48432 1.21370 0.99546 1.01539 0.90712 1.21238 1.05224 0.94745 0.99047 0.96561 0.95375 0.89011 0.92453 0.77763 0.89504 0.89422 0.84411 0.85145 0.89419 0.90088 0.89562 0.88584 0.87520 0.87383 0.82688 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.27 6.79 2.56 -69.08 -0.18 6.61 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -14.13 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.70 -14.57 5.07 -54.93 -0.28 -14.85 16 13 C 0.50 10.27 7.87 -10.98 -0.09 10.18 16 14 O -0.53 -13.38 16.16 -14.35 -0.23 -13.61 16 15 C 0.04 0.58 5.22 36.01 0.19 0.77 16 16 O -0.29 -4.77 9.67 -39.54 -0.38 -5.16 16 17 C 0.12 1.62 6.69 -39.22 -0.26 1.36 16 18 C -0.12 -1.49 9.98 -39.46 -0.39 -1.88 16 19 C -0.11 -1.14 9.40 -39.41 -0.37 -1.51 16 20 C 0.12 1.27 6.60 -83.62 -0.55 0.72 16 21 N -0.56 -4.83 3.14 -112.22 -0.35 -5.18 16 22 C 0.09 0.40 6.26 -3.13 -0.02 0.38 16 23 C -0.13 -0.30 7.18 -25.10 -0.18 -0.48 16 24 C -0.15 -0.69 6.86 -26.74 -0.18 -0.87 16 25 C 0.51 4.85 7.92 -10.86 -0.09 4.77 16 26 O -0.51 -6.86 14.83 5.54 0.08 -6.78 16 27 C -0.11 -1.40 9.28 -39.41 -0.37 -1.77 16 28 C -0.18 -2.32 9.03 -39.46 -0.36 -2.67 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 32 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.39 6.73 8.54 -40.82 -0.35 6.38 16 34 H 0.09 1.07 7.66 -51.93 -0.40 0.68 16 35 H 0.09 1.11 7.66 -51.93 -0.40 0.71 16 36 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.13 0.88 7.01 -52.49 -0.37 0.52 16 38 H 0.09 0.29 7.70 -51.93 -0.40 -0.11 16 39 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 40 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.10 0.02 8.14 -51.92 -0.42 -0.40 16 42 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.16 2.08 5.27 -52.49 -0.28 1.81 16 45 H 0.13 1.47 6.29 -52.49 -0.33 1.14 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -35.24 374.06 -8.97 -44.20 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.15 Total: 4.88 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.90 Total: -0.49 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.00 Total: -44.27 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.53 Total: -25.55 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.24 -8.97 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.325 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds