Wall clock time and date at job start Tue Mar 31 2020 18:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47026 * 2 1 4 4 C 1.50703 * 109.46938 * 120.00206 * 2 1 3 5 5 H 1.08001 * 120.00253 * 120.00288 * 4 2 1 6 6 C 1.37881 * 119.99573 * 299.99443 * 4 2 1 7 7 N 1.31514 * 120.00109 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99863 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46728 * 60.00072 * 8 6 4 10 10 H 1.48494 * 109.46935 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46961 * 300.00508 * 8 6 4 12 12 N 1.46500 * 109.46989 * 239.99486 * 2 1 3 13 13 C 1.34782 * 119.99423 * 85.00578 * 12 2 1 14 14 O 1.21278 * 120.00377 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99510 * 179.97438 * 13 12 2 16 16 O 1.42910 * 109.47075 * 179.97438 * 15 13 12 17 17 C 1.35965 * 116.99928 * 180.02562 * 16 15 13 18 18 C 1.38726 * 119.98334 * 180.02562 * 17 16 15 19 19 C 1.38086 * 120.01365 * 180.02562 * 18 17 16 20 20 C 1.38844 * 119.98585 * 359.97438 * 19 18 17 21 21 N 1.40115 * 120.01379 * 180.02562 * 20 19 18 22 22 C 1.46763 * 124.34925 * 354.19505 * 21 20 19 23 23 C 1.54474 * 105.47359 * 197.01610 * 22 21 20 24 24 C 1.54627 * 101.76694 * 334.58429 * 23 22 21 25 25 C 1.34413 * 124.34862 * 173.89307 * 21 20 19 26 26 O 1.21297 * 124.94653 * 359.58049 * 25 21 20 27 27 C 1.38844 * 119.97411 * 0.27374 * 20 19 18 28 28 C 1.38093 * 119.97932 * 359.47314 * 27 20 19 29 29 H 1.08996 * 109.46748 * 60.00265 * 1 2 3 30 30 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46980 * 299.99939 * 1 2 3 32 32 H 0.97003 * 120.00126 * 179.97438 * 7 6 4 33 33 H 0.96995 * 120.00529 * 265.00234 * 12 2 1 34 34 H 1.09003 * 109.47539 * 59.99858 * 15 13 12 35 35 H 1.08999 * 109.47353 * 299.99767 * 15 13 12 36 36 H 1.07999 * 119.99305 * 0.02562 * 18 17 16 37 37 H 1.08002 * 120.00766 * 179.97438 * 19 18 17 38 38 H 1.08996 * 110.24896 * 316.01822 * 22 21 20 39 39 H 1.09008 * 110.24564 * 77.92562 * 22 21 20 40 40 H 1.09005 * 110.97191 * 92.70371 * 23 22 21 41 41 H 1.09007 * 110.96913 * 216.46671 * 23 22 21 42 42 H 1.09000 * 110.48590 * 143.47269 * 24 23 22 43 43 H 1.08998 * 110.48595 * 265.98574 * 24 23 22 44 44 H 1.07992 * 120.00938 * 179.72193 * 27 20 19 45 45 H 1.08001 * 119.99137 * 180.22707 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8269 -0.4198 5.2204 11 1 1.8279 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7287 -3.5874 16 8 2.6975 0.1894 -4.6816 17 6 3.1320 -0.2950 -5.8753 18 6 3.2032 0.5425 -6.9789 19 6 3.6439 0.0511 -8.1918 20 6 4.0163 -1.2816 -8.3065 21 7 4.4641 -1.7807 -9.5367 22 6 4.4628 -1.0172 -10.7901 23 6 4.6127 -2.0677 -11.9128 24 6 5.3277 -3.2212 -11.1718 25 6 4.9554 -3.0184 -9.7195 26 8 5.0796 -3.8524 -8.8475 27 6 3.9399 -2.1206 -7.2029 28 6 3.5040 -1.6266 -5.9893 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7082 1.1610 3.4844 33 1 2.2490 -1.6318 -1.1526 34 1 1.9777 -1.5510 -3.8325 35 1 3.6492 -1.1205 -3.3978 36 1 2.9139 1.5792 -6.8894 37 1 3.6989 0.7032 -9.0510 38 1 3.5226 -0.4773 -10.9019 39 1 5.3014 -0.3211 -10.8086 40 1 3.6378 -2.3862 -12.2818 41 1 5.2297 -1.6845 -12.7256 42 1 4.9675 -4.1857 -11.5297 43 1 6.4074 -3.1464 -11.3009 44 1 4.2251 -3.1583 -7.2926 45 1 3.4479 -2.2782 -5.1299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:53 Heat of formation + Delta-G solvation = -96.713545 kcal Electronic energy + Delta-G solvation = -27073.759432 eV Core-core repulsion = 23055.849273 eV Total energy + Delta-G solvation = -4017.910159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08931 -41.20384 -40.18685 -38.37913 -37.49069 -36.70521 -34.39577 -33.68970 -32.19927 -31.53117 -29.80337 -28.61329 -28.41110 -27.34386 -24.42722 -23.97022 -23.12557 -22.07623 -21.25498 -20.81829 -19.41550 -19.04073 -18.55795 -17.75882 -17.52520 -17.37743 -17.12706 -16.92269 -16.21989 -15.73628 -15.52687 -15.44351 -15.01294 -14.86791 -14.77647 -14.50764 -14.45117 -14.33680 -14.19344 -13.79201 -13.55725 -13.46517 -13.12421 -13.02582 -12.89000 -12.75620 -12.39188 -12.31261 -12.27572 -12.18858 -12.10558 -11.82251 -11.14435 -10.83937 -10.73899 -10.68833 -10.59467 -10.09461 -9.84979 -8.61826 -8.18455 -6.36450 0.20271 0.27277 1.44973 1.47424 1.51421 1.54917 1.64026 1.67921 1.84357 2.40135 2.74347 2.86360 3.12025 3.29581 3.57333 3.69019 3.84338 3.92860 4.01308 4.04066 4.10552 4.11503 4.18438 4.36938 4.52082 4.60334 4.63811 4.72786 4.84146 4.87372 4.90148 5.01966 5.06293 5.10066 5.15151 5.20639 5.32612 5.39009 5.42245 5.55778 5.64571 5.81011 5.87764 6.06698 6.08125 6.34215 6.69902 6.86023 6.98179 7.29102 7.45626 8.87785 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.001839 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.852640 B =15217.915416 C =15925.131144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.697 5.697 13 C 0.500 3.500 14 O -0.587 6.587 15 C 0.051 3.949 16 O -0.317 6.317 17 C 0.089 3.911 18 C -0.130 4.130 19 C -0.103 4.103 20 C 0.115 3.885 21 N -0.559 5.559 22 C 0.083 3.917 23 C -0.118 4.118 24 C -0.146 4.146 25 C 0.495 3.505 26 O -0.564 6.564 27 C -0.132 4.132 28 C -0.183 4.183 29 H 0.011 0.989 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.266 0.734 33 H 0.410 0.590 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.167 0.833 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 -7.705 -32.807 34.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.348 5.348 13 C 0.285 3.715 14 O -0.468 6.468 15 C -0.027 4.027 16 O -0.230 6.230 17 C 0.043 3.957 18 C -0.149 4.149 19 C -0.123 4.123 20 C 0.021 3.979 21 N -0.283 5.283 22 C -0.038 4.038 23 C -0.155 4.155 24 C -0.185 4.185 25 C 0.287 3.713 26 O -0.443 6.443 27 C -0.152 4.152 28 C -0.202 4.202 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.246 0.754 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.161 0.839 37 H 0.185 0.815 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.142 0.858 44 H 0.161 0.839 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.259 -6.989 -32.217 33.985 hybrid contribution 0.126 -0.623 1.552 1.677 sum 8.386 -7.611 -30.666 32.690 Atomic orbital electron populations 1.21912 0.98109 0.99693 0.99650 1.18406 0.91289 0.91999 0.81597 0.98324 1.21503 1.32808 1.13714 0.90574 0.90528 1.25831 0.94856 0.95592 1.02410 1.70050 1.36847 1.23899 1.24745 0.85354 0.78600 0.78681 0.77423 1.19601 1.21236 1.18788 1.46123 1.65163 1.14449 1.09070 1.20743 0.78218 0.87168 0.85329 1.90672 1.52147 1.18321 1.85652 1.22557 1.04571 0.91951 0.83639 1.86143 1.81593 1.38485 1.16765 1.19334 0.97428 0.93259 0.85657 1.20502 1.03526 1.00564 0.90352 1.20795 1.00432 0.93006 0.98046 1.17857 1.00974 0.93574 0.85489 1.46056 1.58948 1.14911 1.08378 1.22671 1.05135 0.95560 0.80390 1.22677 1.03000 0.92845 0.96992 1.22404 1.04566 1.02960 0.88617 1.22102 0.75547 0.80582 0.93091 1.90614 1.55600 1.47735 1.50389 1.21396 1.00760 1.01431 0.91636 1.21325 1.04831 0.94444 0.99592 0.96985 0.93750 0.91336 0.92494 0.75448 0.86275 0.86532 0.83880 0.81536 0.88086 0.88383 0.88924 0.85552 0.86752 0.85780 0.83937 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.27 14.17 2.56 44.25 0.11 14.28 16 3 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 4 C -0.55 -28.95 8.73 25.60 0.22 -28.72 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.72 5.30 84.66 0.45 1.16 16 7 N -0.92 -52.91 11.32 21.45 0.24 -52.67 16 8 Si 0.98 42.01 29.54 68.60 2.03 44.04 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 N -0.70 -28.88 5.07 -446.09 -2.26 -31.14 16 13 C 0.50 20.65 7.87 87.66 0.69 21.34 16 14 O -0.59 -30.78 16.16 16.01 0.26 -30.52 16 15 C 0.05 1.49 5.22 71.24 0.37 1.87 16 16 O -0.32 -10.60 9.67 -74.12 -0.72 -11.31 16 17 C 0.09 2.45 6.69 22.50 0.15 2.60 16 18 C -0.13 -3.02 9.98 22.35 0.22 -2.79 16 19 C -0.10 -1.83 9.40 22.38 0.21 -1.62 16 20 C 0.11 2.39 6.60 38.11 0.25 2.64 16 21 N -0.56 -8.69 3.14 -627.55 -1.97 -10.66 16 22 C 0.08 0.40 6.26 86.83 0.54 0.95 16 23 C -0.12 -0.07 7.18 31.65 0.23 0.16 16 24 C -0.15 -0.92 6.86 30.59 0.21 -0.71 16 25 C 0.50 8.91 7.92 87.90 0.70 9.60 16 26 O -0.56 -15.41 14.83 -3.08 -0.05 -15.46 16 27 C -0.13 -3.32 9.28 22.38 0.21 -3.11 16 28 C -0.18 -4.54 9.03 22.35 0.20 -4.34 16 29 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 32 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.41 13.63 8.54 -92.71 -0.79 12.84 16 34 H 0.12 2.72 7.66 -2.39 -0.02 2.70 16 35 H 0.12 2.74 7.66 -2.39 -0.02 2.72 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.17 1.65 7.01 -2.91 -0.02 1.63 16 38 H 0.10 0.25 7.70 -2.39 -0.02 0.24 16 39 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 40 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 41 H 0.13 -0.61 8.14 -2.38 -0.02 -0.63 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.14 3.99 5.27 -2.91 -0.02 3.97 16 45 H 0.15 3.07 6.29 -2.91 -0.02 3.05 16 Total: -1.00 -81.72 374.06 3.20 -78.51 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.23 Total: 22.15 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 5.44 Total: 7.06 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -3.99 Total: -94.47 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -0.50 Total: -57.29 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -81.72 3.20 -78.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.202 kcal (2) G-P(sol) polarization free energy of solvation -81.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds