Wall clock time and date at job start Tue Mar 31 2020 17:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46906 * 2 1 4 4 C 1.50703 * 109.47017 * 119.99592 * 2 1 3 5 5 H 1.08002 * 119.99231 * 120.00279 * 4 2 1 6 6 C 1.37867 * 120.00007 * 300.00429 * 4 2 1 7 7 N 1.31514 * 119.99624 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00429 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47174 * 89.99823 * 8 6 4 10 10 H 1.48500 * 109.47424 * 209.99915 * 8 6 4 11 11 H 1.48500 * 109.47360 * 329.99899 * 8 6 4 12 12 N 1.46493 * 109.47449 * 240.00407 * 2 1 3 13 13 C 1.34777 * 120.00470 * 84.99806 * 12 2 1 14 14 O 1.21283 * 119.99773 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00105 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47060 * 179.97438 * 15 13 12 17 17 N 1.46506 * 109.47200 * 179.97438 * 16 15 13 18 18 C 1.40208 * 120.51068 * 270.02361 * 17 16 15 19 19 C 1.38507 * 120.74478 * 15.43533 * 18 17 16 20 20 C 1.38284 * 119.81880 * 180.02562 * 19 18 17 21 21 C 1.38282 * 120.19635 * 0.02562 * 20 19 18 22 22 C 1.38311 * 120.25967 * 359.96774 * 21 20 19 23 23 C 1.38398 * 119.87372 * 0.03425 * 22 21 20 24 24 O 1.35959 * 120.68278 * 180.02562 * 23 22 21 25 25 C 1.42992 * 116.72278 * 147.09247 * 24 23 22 26 26 H 1.09003 * 109.44775 * 286.42354 * 25 24 23 27 27 C 1.53006 * 109.44691 * 166.48887 * 25 24 23 28 28 C 1.35088 * 120.50500 * 90.00148 * 17 16 15 29 29 O 1.21292 * 120.13401 * 1.66734 * 28 17 16 30 30 H 1.09001 * 109.46980 * 60.00712 * 1 2 3 31 31 H 1.09000 * 109.46541 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47506 * 299.99653 * 1 2 3 33 33 H 0.97007 * 120.00333 * 179.97438 * 7 6 4 34 34 H 0.97003 * 119.99950 * 264.99494 * 12 2 1 35 35 H 1.09005 * 109.47226 * 59.99638 * 15 13 12 36 36 H 1.09002 * 109.47313 * 299.99680 * 15 13 12 37 37 H 1.09005 * 109.47147 * 59.99895 * 16 15 13 38 38 H 1.08996 * 109.47442 * 299.99957 * 16 15 13 39 39 H 1.08003 * 120.09384 * 0.02562 * 19 18 17 40 40 H 1.08000 * 119.90878 * 180.02562 * 20 19 18 41 41 H 1.08004 * 119.87281 * 179.97438 * 21 20 19 42 42 H 1.08003 * 120.06593 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.46998 * 299.93253 * 27 25 24 44 44 H 1.09000 * 109.47050 * 59.93544 * 27 25 24 45 45 H 1.09001 * 109.46801 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5565 8 14 0.6246 1.2790 2.6541 9 1 -0.8029 0.8725 2.6997 10 1 0.9756 1.9951 3.9068 11 1 0.8468 2.1765 1.4920 12 7 2.0184 -0.6905 -1.1961 13 6 2.1472 -0.0181 -2.3571 14 8 1.8582 1.1585 -2.4117 15 6 2.6490 -0.7287 -3.5877 16 6 2.7000 0.2543 -4.7590 17 7 3.1885 -0.4362 -5.9552 18 6 4.5603 -0.4800 -6.2415 19 6 5.4967 -0.1642 -5.2710 20 6 6.8449 -0.2132 -5.5745 21 6 7.2596 -0.5757 -6.8429 22 6 6.3295 -0.8924 -7.8163 23 6 4.9784 -0.8455 -7.5200 24 8 4.0500 -1.1540 -8.4642 25 6 2.8484 -1.7783 -8.0046 26 1 3.0578 -2.8131 -7.7337 27 6 1.7994 -1.7457 -9.1180 28 6 2.3240 -1.0410 -6.7989 29 8 1.1308 -0.9906 -6.5874 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.9031 -0.5279 4.4376 34 1 2.2492 -1.6316 -1.1526 35 1 1.9762 -1.5505 -3.8325 36 1 3.6482 -1.1212 -3.3986 37 1 3.3727 1.0765 -4.5144 38 1 1.7008 0.6465 -4.9480 39 1 5.1747 0.1196 -4.2799 40 1 7.5763 0.0324 -4.8187 41 1 8.3139 -0.6119 -7.0743 42 1 6.6568 -1.1747 -8.8061 43 1 1.5896 -0.7110 -9.3893 44 1 2.1777 -2.2802 -9.9894 45 1 0.8835 -2.2219 -8.7682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:58 Heat of formation + Delta-G solvation = -71.612589 kcal Electronic energy + Delta-G solvation = -28437.333644 eV Core-core repulsion = 24420.511945 eV Total energy + Delta-G solvation = -4016.821699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.92493 -39.36216 -39.08826 -38.02121 -36.17186 -35.05999 -32.52528 -32.46181 -31.85881 -30.56996 -29.91166 -28.99992 -25.94571 -25.18973 -23.65904 -23.63887 -22.43864 -21.01051 -19.70386 -19.65615 -19.48803 -17.81819 -17.31208 -17.07349 -16.13800 -15.87251 -15.77209 -15.44993 -15.20968 -15.04378 -14.79888 -14.74896 -14.21867 -14.05483 -13.58552 -13.33389 -13.15425 -13.01224 -12.76387 -12.67944 -12.54785 -12.42662 -12.22237 -12.21842 -11.81440 -11.52485 -11.45577 -11.35667 -11.14050 -10.84581 -10.64819 -10.21638 -10.17383 -9.74727 -9.26572 -9.23833 -8.99123 -8.79072 -8.21549 -8.14863 -6.23956 -4.26818 0.76076 0.94020 2.00761 2.21649 2.86233 3.13081 3.22023 3.33595 3.38031 3.38865 3.61039 3.91955 4.29210 4.32193 4.36584 4.49827 4.66195 4.81910 4.85405 4.88075 4.95926 5.07752 5.10967 5.21432 5.27727 5.29971 5.38459 5.52629 5.62219 5.64621 5.71766 5.84709 5.88541 6.10583 6.16534 6.28780 6.32151 6.35839 6.53834 6.61962 6.82855 7.03801 7.15048 7.23911 7.46773 7.48048 8.09232 8.47340 8.71434 8.85542 9.36784 10.88189 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.002733 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.152425 B =10243.456482 C =11296.409687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.699 5.699 13 C 0.509 3.491 14 O -0.557 6.557 15 C -0.160 4.160 16 C 0.126 3.874 17 N -0.550 5.550 18 C 0.098 3.902 19 C -0.122 4.122 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.110 4.110 23 C 0.075 3.925 24 O -0.303 6.303 25 C 0.079 3.921 26 H 0.103 0.897 27 C -0.134 4.134 28 C 0.487 3.513 29 O -0.498 6.498 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.268 0.732 34 H 0.396 0.604 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -3.242 -25.182 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.347 5.347 13 C 0.293 3.707 14 O -0.436 6.436 15 C -0.201 4.201 16 C 0.005 3.995 17 N -0.274 5.274 18 C 0.004 3.996 19 C -0.143 4.143 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.129 4.129 23 C 0.029 3.971 24 O -0.218 6.218 25 C 0.019 3.981 26 H 0.121 0.879 27 C -0.192 4.192 28 C 0.275 3.725 29 O -0.372 6.372 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.229 0.771 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.467 -2.343 -25.054 26.248 hybrid contribution -0.528 0.164 0.697 0.890 sum 6.940 -2.179 -24.357 25.419 Atomic orbital electron populations 1.22453 0.99279 1.00900 0.99363 1.19117 0.90175 0.94673 0.82752 0.93314 1.21035 1.33353 1.14458 0.88550 0.90205 1.24829 0.95465 0.96727 0.95509 1.69868 1.44895 1.40085 0.98064 0.86869 0.80566 0.83566 0.77455 1.20280 1.22121 1.18651 1.46195 1.64839 1.13866 1.09779 1.20177 0.78585 0.87375 0.84546 1.90671 1.51604 1.16087 1.85272 1.22030 1.03704 1.00283 0.94074 1.21443 1.02970 0.93911 0.81204 1.45859 1.04402 1.52266 1.24873 1.18176 0.83594 1.03642 0.94206 1.20860 0.92381 1.02294 0.98760 1.21060 0.94967 0.99527 0.97093 1.21008 0.99519 0.99953 0.92777 1.20514 0.88942 1.02453 1.00946 1.18603 0.89749 1.02197 0.86584 1.86221 1.26345 1.76579 1.32633 1.22655 0.85128 0.96700 0.93577 0.87939 1.21714 0.96569 1.04430 0.96443 1.21555 0.86915 0.79659 0.84371 1.90778 1.14610 1.58001 1.73764 0.94505 0.92813 0.93414 0.92247 0.77086 0.88754 0.88773 0.88533 0.87893 0.84502 0.84885 0.84920 0.84503 0.91043 0.90214 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 8.96 37.16 0.33 -3.33 16 2 C 0.24 5.61 2.15 -69.08 -0.15 5.47 16 3 H 0.05 1.27 6.64 -51.93 -0.34 0.93 16 4 C -0.54 -14.41 9.31 -34.44 -0.32 -14.73 16 5 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 8 Si 0.89 21.78 24.37 -169.99 -4.14 17.64 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.21 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 12 N -0.70 -13.66 5.07 -54.93 -0.28 -13.93 16 13 C 0.51 9.29 7.79 -10.99 -0.09 9.20 16 14 O -0.56 -12.11 15.65 5.55 0.09 -12.02 16 15 C -0.16 -2.15 5.88 -27.89 -0.16 -2.32 16 16 C 0.13 1.70 4.06 -4.04 -0.02 1.68 16 17 N -0.55 -6.77 2.72 -113.22 -0.31 -7.08 16 18 C 0.10 1.08 6.38 -83.50 -0.53 0.55 16 19 C -0.12 -1.20 8.94 -39.47 -0.35 -1.55 16 20 C -0.11 -0.86 10.04 -39.55 -0.40 -1.25 16 21 C -0.11 -0.80 10.04 -39.54 -0.40 -1.20 16 22 C -0.11 -0.88 10.00 -39.50 -0.39 -1.27 16 23 C 0.07 0.77 6.44 -39.09 -0.25 0.51 16 24 O -0.30 -3.10 10.09 -19.61 -0.20 -3.30 16 25 C 0.08 0.75 3.68 -27.86 -0.10 0.64 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 27 C -0.13 -1.03 9.15 37.16 0.34 -0.69 16 28 C 0.49 6.14 7.38 -10.82 -0.08 6.06 16 29 O -0.50 -7.60 15.80 5.55 0.09 -7.51 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.40 6.79 8.54 -40.82 -0.35 6.44 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.08 7.19 -51.93 -0.37 0.70 16 37 H 0.10 1.26 7.02 -51.93 -0.36 0.90 16 38 H 0.10 1.59 7.41 -51.93 -0.38 1.21 16 39 H 0.14 1.34 5.99 -52.48 -0.31 1.02 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.69 7.86 -51.93 -0.41 0.29 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -33.38 367.03 -7.23 -40.61 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.11 Total: 5.75 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.67 Total: -0.13 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.19 Total: -46.57 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.02 Total: -22.83 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.38 -7.23 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.004 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds