Wall clock time and date at job start Tue Mar 31 2020 17:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46906 * 2 1 4 4 C 1.50703 * 109.47017 * 119.99592 * 2 1 3 5 5 H 1.08002 * 119.99231 * 120.00279 * 4 2 1 6 6 C 1.37867 * 120.00007 * 300.00429 * 4 2 1 7 7 N 1.31514 * 119.99624 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00429 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47174 * 89.99823 * 8 6 4 10 10 H 1.48500 * 109.47424 * 209.99915 * 8 6 4 11 11 H 1.48500 * 109.47360 * 329.99899 * 8 6 4 12 12 N 1.46493 * 109.47449 * 240.00407 * 2 1 3 13 13 C 1.34777 * 120.00470 * 84.99806 * 12 2 1 14 14 O 1.21283 * 119.99773 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00105 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47060 * 179.97438 * 15 13 12 17 17 N 1.46506 * 109.47200 * 179.97438 * 16 15 13 18 18 C 1.40208 * 120.51068 * 270.02361 * 17 16 15 19 19 C 1.38507 * 120.74478 * 15.43533 * 18 17 16 20 20 C 1.38284 * 119.81880 * 180.02562 * 19 18 17 21 21 C 1.38282 * 120.19635 * 0.02562 * 20 19 18 22 22 C 1.38311 * 120.25967 * 359.96774 * 21 20 19 23 23 C 1.38398 * 119.87372 * 0.03425 * 22 21 20 24 24 O 1.35959 * 120.68278 * 180.02562 * 23 22 21 25 25 C 1.42992 * 116.72278 * 147.09247 * 24 23 22 26 26 H 1.09003 * 109.44775 * 286.42354 * 25 24 23 27 27 C 1.53006 * 109.44691 * 166.48887 * 25 24 23 28 28 C 1.35088 * 120.50500 * 90.00148 * 17 16 15 29 29 O 1.21292 * 120.13401 * 1.66734 * 28 17 16 30 30 H 1.09001 * 109.46980 * 60.00712 * 1 2 3 31 31 H 1.09000 * 109.46541 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47506 * 299.99653 * 1 2 3 33 33 H 0.97007 * 120.00333 * 179.97438 * 7 6 4 34 34 H 0.97003 * 119.99950 * 264.99494 * 12 2 1 35 35 H 1.09005 * 109.47226 * 59.99638 * 15 13 12 36 36 H 1.09002 * 109.47313 * 299.99680 * 15 13 12 37 37 H 1.09005 * 109.47147 * 59.99895 * 16 15 13 38 38 H 1.08996 * 109.47442 * 299.99957 * 16 15 13 39 39 H 1.08003 * 120.09384 * 0.02562 * 19 18 17 40 40 H 1.08000 * 119.90878 * 180.02562 * 20 19 18 41 41 H 1.08004 * 119.87281 * 179.97438 * 21 20 19 42 42 H 1.08003 * 120.06593 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.46998 * 299.93253 * 27 25 24 44 44 H 1.09000 * 109.47050 * 59.93544 * 27 25 24 45 45 H 1.09001 * 109.46801 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5565 8 14 0.6246 1.2790 2.6541 9 1 -0.8029 0.8725 2.6997 10 1 0.9756 1.9951 3.9068 11 1 0.8468 2.1765 1.4920 12 7 2.0184 -0.6905 -1.1961 13 6 2.1472 -0.0181 -2.3571 14 8 1.8582 1.1585 -2.4117 15 6 2.6490 -0.7287 -3.5877 16 6 2.7000 0.2543 -4.7590 17 7 3.1885 -0.4362 -5.9552 18 6 4.5603 -0.4800 -6.2415 19 6 5.4967 -0.1642 -5.2710 20 6 6.8449 -0.2132 -5.5745 21 6 7.2596 -0.5757 -6.8429 22 6 6.3295 -0.8924 -7.8163 23 6 4.9784 -0.8455 -7.5200 24 8 4.0500 -1.1540 -8.4642 25 6 2.8484 -1.7783 -8.0046 26 1 3.0578 -2.8131 -7.7337 27 6 1.7994 -1.7457 -9.1180 28 6 2.3240 -1.0410 -6.7989 29 8 1.1308 -0.9906 -6.5874 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.9031 -0.5279 4.4376 34 1 2.2492 -1.6316 -1.1526 35 1 1.9762 -1.5505 -3.8325 36 1 3.6482 -1.1212 -3.3986 37 1 3.3727 1.0765 -4.5144 38 1 1.7008 0.6465 -4.9480 39 1 5.1747 0.1196 -4.2799 40 1 7.5763 0.0324 -4.8187 41 1 8.3139 -0.6119 -7.0743 42 1 6.6568 -1.1747 -8.8061 43 1 1.5896 -0.7110 -9.3893 44 1 2.1777 -2.2802 -9.9894 45 1 0.8835 -2.2219 -8.7682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064346003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:57 Heat of formation + Delta-G solvation = -94.536767 kcal Electronic energy + Delta-G solvation = -28438.327711 eV Core-core repulsion = 24420.511945 eV Total energy + Delta-G solvation = -4017.815766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.74749 -40.79856 -40.02697 -38.80869 -37.21462 -36.74689 -34.45010 -33.27864 -33.04696 -31.53620 -31.24820 -29.81541 -27.29658 -26.89341 -24.58883 -24.35875 -23.36612 -22.58107 -21.29227 -20.49699 -20.27917 -19.23383 -18.42995 -18.07354 -17.66933 -17.43928 -16.72415 -16.46056 -16.43425 -16.26315 -15.77477 -15.53735 -15.43319 -15.20215 -14.91851 -14.67325 -14.31291 -14.17329 -14.09915 -14.06386 -13.65995 -13.46086 -13.29715 -13.20763 -13.12464 -12.84214 -12.80976 -12.36202 -12.20714 -12.17765 -12.11258 -11.65165 -11.51913 -11.31431 -11.10419 -10.90744 -10.80969 -9.94497 -9.67047 -8.93386 -8.40509 -6.46558 0.03713 0.28410 1.15132 1.25845 1.30297 1.33852 1.43121 1.64225 2.12796 2.23980 2.43396 2.72588 2.84282 2.95700 3.60186 3.62244 3.67560 3.80148 3.84092 3.88966 4.06575 4.27034 4.29003 4.33889 4.41553 4.45914 4.50506 4.54389 4.66644 4.67990 4.70938 4.75378 4.81359 4.95498 4.98476 5.11727 5.25747 5.28082 5.30573 5.38692 5.54363 5.58905 5.69891 5.81864 6.09742 6.27515 6.54619 6.54807 6.78482 7.15633 7.35880 8.74682 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.002733 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.152425 B =10243.456482 C =11296.409687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.242 3.758 3 H 0.026 0.974 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.937 3.063 9 H -0.262 1.262 10 H -0.291 1.291 11 H -0.262 1.262 12 N -0.699 5.699 13 C 0.510 3.490 14 O -0.591 6.591 15 C -0.140 4.140 16 C 0.132 3.868 17 N -0.550 5.550 18 C 0.073 3.927 19 C -0.133 4.133 20 C -0.110 4.110 21 C -0.102 4.102 22 C -0.108 4.108 23 C 0.060 3.940 24 O -0.307 6.307 25 C 0.082 3.918 26 H 0.124 0.876 27 C -0.131 4.131 28 C 0.479 3.521 29 O -0.535 6.535 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.271 0.729 34 H 0.408 0.592 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.059 0.941 44 H 0.104 0.896 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.807 -3.740 -27.097 29.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.044 0.956 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.765 3.235 9 H -0.187 1.187 10 H -0.218 1.218 11 H -0.187 1.187 12 N -0.348 5.348 13 C 0.297 3.703 14 O -0.473 6.473 15 C -0.181 4.181 16 C 0.010 3.990 17 N -0.274 5.274 18 C -0.020 4.020 19 C -0.153 4.153 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.127 4.127 23 C 0.014 3.986 24 O -0.223 6.223 25 C 0.023 3.977 26 H 0.142 0.858 27 C -0.188 4.188 28 C 0.268 3.732 29 O -0.412 6.412 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.244 0.756 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.183 0.817 42 H 0.177 0.823 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.865 -2.865 -27.001 28.563 hybrid contribution -0.790 0.300 1.237 1.498 sum 8.075 -2.564 -25.764 27.121 Atomic orbital electron populations 1.22366 0.98083 1.01650 0.99424 1.18776 0.91032 0.93334 0.83194 0.95646 1.21244 1.32433 1.13650 0.89844 0.92323 1.25532 0.96773 0.99281 0.95365 1.69969 1.46629 1.41857 0.98674 0.86024 0.79756 0.80449 0.77284 1.18740 1.21813 1.18700 1.46034 1.65136 1.14439 1.09149 1.20858 0.77381 0.86953 0.85126 1.90655 1.52924 1.17878 1.85852 1.21899 1.04960 0.99793 0.91449 1.21200 1.01737 0.94099 0.81929 1.45822 1.05310 1.52018 1.24249 1.18377 0.82800 1.05639 0.95221 1.20963 0.93240 1.02704 0.98432 1.21370 0.94435 0.98821 0.98184 1.21416 1.00993 0.97762 0.91880 1.20869 0.88050 1.01560 1.02204 1.18907 0.90623 1.02789 0.86277 1.86211 1.26435 1.76857 1.32748 1.22811 0.85256 0.97005 0.92660 0.85821 1.21738 0.96205 1.04079 0.96744 1.22241 0.86545 0.79343 0.85032 1.90751 1.16048 1.59538 1.74820 0.93746 0.91726 0.93982 0.91987 0.75639 0.87823 0.86177 0.88501 0.90389 0.85054 0.82931 0.81701 0.82340 0.92220 0.87714 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.95 8.96 71.98 0.65 -6.31 16 2 C 0.24 11.44 2.15 44.25 0.10 11.53 16 3 H 0.03 1.34 6.64 -2.39 -0.02 1.33 16 4 C -0.53 -28.89 9.31 25.60 0.24 -28.65 16 5 H 0.06 3.36 7.98 -2.91 -0.02 3.33 16 6 C 0.03 1.71 5.45 84.65 0.46 2.17 16 7 N -0.93 -55.59 13.96 21.44 0.30 -55.29 16 8 Si 0.94 44.73 24.37 68.60 1.67 46.41 16 9 H -0.26 -11.81 6.87 99.48 0.68 -11.13 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.26 -12.45 6.53 99.48 0.65 -11.80 16 12 N -0.70 -27.01 5.07 -446.10 -2.26 -29.27 16 13 C 0.51 18.48 7.79 87.66 0.68 19.17 16 14 O -0.59 -25.94 15.65 -3.04 -0.05 -25.98 16 15 C -0.14 -3.69 5.88 29.85 0.18 -3.51 16 16 C 0.13 3.61 4.06 86.38 0.35 3.96 16 17 N -0.55 -13.44 2.72 -630.32 -1.71 -15.16 16 18 C 0.07 1.53 6.38 38.14 0.24 1.78 16 19 C -0.13 -2.42 8.94 22.34 0.20 -2.22 16 20 C -0.11 -1.44 10.04 22.29 0.22 -1.22 16 21 C -0.10 -1.06 10.04 22.30 0.22 -0.84 16 22 C -0.11 -1.40 10.00 22.33 0.22 -1.18 16 23 C 0.06 1.12 6.44 22.59 0.15 1.26 16 24 O -0.31 -5.81 10.09 -93.09 -0.94 -6.75 16 25 C 0.08 1.45 3.68 29.86 0.11 1.56 16 26 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 27 C -0.13 -1.85 9.15 71.98 0.66 -1.19 16 28 C 0.48 12.04 7.38 87.62 0.65 12.68 16 29 O -0.54 -16.68 15.80 -3.07 -0.05 -16.73 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.04 1.89 3.27 -2.39 -0.01 1.89 16 33 H 0.27 15.15 8.31 -92.70 -0.77 14.37 16 34 H 0.41 13.72 8.54 -92.71 -0.79 12.93 16 35 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.12 2.56 7.19 -2.39 -0.02 2.55 16 37 H 0.10 2.59 7.02 -2.38 -0.02 2.57 16 38 H 0.08 2.52 7.41 -2.39 -0.02 2.50 16 39 H 0.13 2.45 5.99 -2.91 -0.02 2.44 16 40 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 42 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 1.32 7.86 -2.39 -0.02 1.30 16 Total: -1.00 -72.98 367.03 2.44 -70.54 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.16 Total: 23.24 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 5.32 Total: 9.00 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -3.67 Total: -99.72 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -1.04 Total: -49.46 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.67 Total: 46.41 kcal Total: -72.98 2.44 -70.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.998 kcal (2) G-P(sol) polarization free energy of solvation -72.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds