Wall clock time and date at job start Tue Mar 31 2020 17:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.79812 * 2 1 4 4 C 1.54940 * 110.74161 * 123.29054 * 2 1 3 5 5 N 1.48112 * 103.25612 * 155.71340 * 4 2 1 6 6 C 1.34783 * 127.03144 * 140.67235 * 5 4 2 7 7 O 1.21369 * 119.99893 * 180.02562 * 6 5 4 8 8 C 1.49321 * 120.00233 * 0.04810 * 6 5 4 9 9 O 1.21386 * 119.99541 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99929 * 179.97438 * 8 6 5 11 11 C 1.39746 * 119.99754 * 175.49414 * 10 8 6 12 12 C 1.38991 * 120.00581 * 214.85895 * 11 10 8 13 13 C 1.37969 * 119.99091 * 179.76189 * 12 11 10 14 14 C 1.38937 * 120.00559 * 0.49827 * 13 12 11 15 15 O 1.35762 * 119.98933 * 179.73996 * 14 13 12 16 16 C 1.34798 * 116.99613 * 185.36517 * 15 14 13 17 17 H 1.07998 * 120.00214 * 354.96292 * 16 15 14 18 18 C 1.38654 * 119.99862 * 174.96646 * 16 15 14 19 19 N 1.31556 * 120.00083 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99882 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47041 * 60.00033 * 20 18 16 22 22 H 1.48501 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47281 * 299.99887 * 20 18 16 24 24 C 1.38936 * 120.01335 * 359.76083 * 14 13 12 25 25 C 1.37963 * 120.00927 * 0.02562 * 24 14 13 26 26 C 1.47481 * 105.93570 * 320.71070 * 5 4 2 27 27 C 1.54005 * 107.08007 * 25.44433 * 26 5 4 28 28 H 1.09005 * 110.32334 * 117.69166 * 27 26 5 29 29 C 1.53005 * 110.32642 * 239.80018 * 27 26 5 30 30 H 1.09006 * 109.47097 * 183.29050 * 1 2 3 31 31 H 1.08997 * 109.47397 * 303.28611 * 1 2 3 32 32 H 1.09000 * 109.47351 * 63.29306 * 1 2 3 33 33 H 1.09004 * 110.65919 * 37.27306 * 4 2 1 34 34 H 1.09004 * 110.80357 * 274.22596 * 4 2 1 35 35 H 0.96995 * 120.00337 * 355.48999 * 10 8 6 36 36 H 1.08003 * 120.00661 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.99836 * 180.21433 * 13 12 11 38 38 H 0.96998 * 120.00357 * 180.02562 * 19 18 16 39 39 H 1.08003 * 119.99336 * 179.97438 * 24 14 13 40 40 H 1.07996 * 120.00350 * 179.97438 * 25 24 14 41 41 H 1.08999 * 109.91312 * 266.08431 * 26 5 4 42 42 H 1.08998 * 109.91336 * 144.80743 * 26 5 4 43 43 H 1.09002 * 109.46660 * 58.55199 * 29 27 26 44 44 H 1.09001 * 109.47051 * 178.54646 * 29 27 26 45 45 H 1.09000 * 109.47078 * 298.54966 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7953 1.2112 5 7 3.4279 -1.2099 0.7622 6 6 4.5538 -1.2470 1.5022 7 8 5.5978 -1.6100 1.0007 8 6 4.5167 -0.8422 2.9390 9 8 3.4726 -0.4791 3.4404 10 7 5.6425 -0.8798 3.6789 11 6 5.6290 -0.4124 4.9958 12 6 6.7472 0.2270 5.5180 13 6 6.7317 0.6927 6.8166 14 6 5.6023 0.5134 7.6056 15 8 5.5894 0.9671 8.8851 16 6 4.5081 0.6641 9.6309 17 1 3.6676 0.1558 9.1819 18 6 4.4750 1.0051 10.9744 19 7 5.4985 1.6249 11.5212 20 14 2.9763 0.5859 12.0078 21 1 2.7693 -0.8846 12.0057 22 1 3.1893 1.0533 13.4011 23 1 1.7794 1.2552 11.4382 24 6 4.4863 -0.1305 7.0857 25 6 4.4996 -0.5926 5.7858 26 6 3.2875 -1.5728 -0.6603 27 6 2.0775 -0.7936 -1.2086 28 1 2.3924 -0.1127 -1.9994 29 6 1.0156 -1.7618 -1.7339 30 1 -0.3633 -1.0260 0.0590 31 1 -0.3634 0.5640 0.8590 32 1 -0.3634 0.4619 -0.9180 33 1 1.4558 -1.6668 1.4131 34 1 2.1456 -0.1592 2.0938 35 1 6.4621 -1.2314 3.2975 36 1 7.6268 0.3623 4.9061 37 1 7.5993 1.1927 7.2213 38 1 5.4756 1.8631 12.4612 39 1 3.6087 -0.2701 7.6994 40 1 3.6322 -1.0934 5.3818 41 1 3.1126 -2.6445 -0.7546 42 1 4.1883 -1.2916 -1.2058 43 1 0.7018 -2.4278 -0.9301 44 1 0.1557 -1.1973 -2.0944 45 1 1.4327 -2.3501 -2.5512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076700895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:54 Heat of formation + Delta-G solvation = -56.470906 kcal Electronic energy + Delta-G solvation = -27765.546315 eV Core-core repulsion = 23749.381209 eV Total energy + Delta-G solvation = -4016.165107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.06480 -39.74303 -38.74706 -38.06053 -36.62420 -34.33622 -33.52449 -32.22952 -31.23939 -30.27945 -28.53161 -27.52297 -26.40646 -25.47447 -24.49188 -22.82729 -22.23949 -21.01126 -19.88126 -19.50129 -18.33003 -17.83397 -17.20762 -17.05683 -16.55387 -16.26932 -15.58678 -15.09789 -14.83821 -14.63331 -14.53697 -14.14089 -13.86282 -13.66298 -13.64930 -13.44059 -13.09395 -12.86416 -12.84967 -12.61874 -12.37858 -12.30119 -12.02626 -11.82082 -11.71615 -11.61124 -11.34227 -11.20847 -11.04340 -10.83354 -10.78555 -10.74813 -10.48022 -9.80549 -9.53266 -9.20959 -9.07430 -8.75132 -8.27003 -7.02375 -6.48624 -4.06048 1.25666 2.08316 2.14054 2.32347 3.11972 3.12647 3.16165 3.21221 3.43334 3.94515 4.09749 4.16209 4.35367 4.41863 4.53037 4.72908 4.94762 5.02705 5.05591 5.08189 5.18819 5.21357 5.33428 5.35206 5.38355 5.51570 5.60091 5.62124 5.66550 5.70981 5.73385 5.82201 5.85954 6.04291 6.07762 6.12189 6.23324 6.64010 6.73948 6.90516 6.97248 7.03634 7.23336 7.35025 7.37625 7.67372 7.70661 7.96019 8.09027 8.96699 9.65087 10.68894 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002352 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.600873 B =11901.981196 C =13130.109801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.083 0.917 4 C 0.088 3.912 5 N -0.594 5.594 6 C 0.528 3.472 7 O -0.526 6.526 8 C 0.501 3.499 9 O -0.505 6.505 10 N -0.623 5.623 11 C 0.022 3.978 12 C -0.084 4.084 13 C -0.178 4.178 14 C 0.150 3.850 15 O -0.173 6.173 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.222 4.222 25 C -0.059 4.059 26 C 0.108 3.892 27 C -0.104 4.104 28 H 0.084 0.916 29 C -0.145 4.145 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.414 0.586 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.271 0.729 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 -5.684 -23.838 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.102 0.898 4 C -0.034 4.034 5 N -0.328 5.328 6 C 0.311 3.689 7 O -0.402 6.402 8 C 0.282 3.718 9 O -0.381 6.381 10 N -0.268 5.268 11 C -0.070 4.070 12 C -0.104 4.104 13 C -0.198 4.198 14 C 0.095 3.905 15 O -0.076 6.076 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.194 1.194 24 C -0.242 4.242 25 C -0.079 4.079 26 C -0.015 4.015 27 C -0.123 4.123 28 H 0.103 0.897 29 C -0.202 4.202 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.627 -5.397 -23.329 25.131 hybrid contribution -0.333 -0.411 0.213 0.570 sum -7.960 -5.808 -23.116 25.128 Atomic orbital electron populations 1.21799 0.93635 1.02424 1.02142 1.22355 0.96495 0.99507 0.94024 0.89842 1.23207 0.81132 0.99847 0.99175 1.48496 1.08799 1.64010 1.11507 1.19805 0.82797 0.79119 0.87137 1.90760 1.29596 1.46854 1.73007 1.19900 0.84935 0.80274 0.86659 1.90663 1.29588 1.45844 1.72042 1.42840 1.12535 1.59700 1.11734 1.17238 0.97967 1.08482 0.83345 1.20390 0.96960 0.97858 0.95229 1.20003 0.98012 1.08086 0.93659 1.19445 0.92974 0.91645 0.86404 1.83967 1.41974 1.64319 1.17297 1.21308 0.94545 1.39798 0.91149 0.88967 1.25304 0.98804 0.96353 0.96015 1.70025 1.29611 1.36558 1.13292 0.85770 0.79913 0.79135 0.78583 1.19441 1.20256 1.19418 1.21084 1.00102 1.06928 0.96064 1.20830 0.96905 0.97769 0.92416 1.22251 0.98987 0.99492 0.80731 1.22127 0.94894 0.97444 0.97832 0.89735 1.21927 0.98443 0.98884 1.00927 0.91904 0.92123 0.92140 0.90656 0.86282 0.74984 0.86434 0.85837 0.91879 0.85045 0.85651 0.90922 0.90253 0.92189 0.91713 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.03 37.15 0.30 -0.53 16 2 C -0.10 -0.77 3.59 -88.75 -0.32 -1.08 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.09 0.86 6.07 -2.13 -0.01 0.85 16 5 N -0.59 -6.68 3.29 -170.32 -0.56 -7.24 16 6 C 0.53 7.25 7.95 -11.64 -0.09 7.15 16 7 O -0.53 -8.01 16.82 5.48 0.09 -7.91 16 8 C 0.50 7.55 7.70 -11.65 -0.09 7.46 16 9 O -0.51 -8.40 11.12 5.47 0.06 -8.33 16 10 N -0.62 -9.33 5.32 -10.27 -0.05 -9.38 16 11 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 12 C -0.08 -1.47 9.96 -39.40 -0.39 -1.87 16 13 C -0.18 -3.64 9.98 -39.42 -0.39 -4.04 16 14 C 0.15 3.57 6.65 -39.06 -0.26 3.31 16 15 O -0.17 -4.85 9.75 0.10 0.00 -4.85 16 16 C -0.39 -10.82 9.48 30.89 0.29 -10.52 16 17 H 0.09 2.35 5.19 -52.49 -0.27 2.08 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 20 Si 0.94 20.32 29.55 -169.99 -5.02 15.29 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.22 -4.87 9.16 -39.42 -0.36 -5.23 16 25 C -0.06 -1.16 8.69 -39.40 -0.34 -1.50 16 26 C 0.11 0.92 6.62 -2.98 -0.02 0.90 16 27 C -0.10 -0.66 3.53 -89.25 -0.31 -0.98 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 C -0.14 -0.71 7.72 37.16 0.29 -0.42 16 30 H 0.06 0.33 6.60 -51.93 -0.34 -0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.30 7.64 -51.93 -0.40 -0.10 16 33 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 34 H 0.12 1.42 5.42 -51.93 -0.28 1.14 16 35 H 0.41 5.29 8.30 -40.82 -0.34 4.95 16 36 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.13 2.88 5.63 -52.48 -0.30 2.58 16 40 H 0.13 2.36 6.22 -52.49 -0.33 2.03 16 41 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 42 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 43 H 0.06 0.31 7.45 -51.93 -0.39 -0.07 16 44 H 0.06 0.27 6.90 -51.93 -0.36 -0.08 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -31.76 367.89 -7.43 -39.19 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.90 Total: 7.49 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.34 Total: -5.64 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.14 Total: -40.77 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.15 Total: -21.10 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.76 -7.43 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076700895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.283 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds