Wall clock time and date at job start Tue Mar 31 2020 17:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.79812 * 2 1 4 4 C 1.54940 * 110.74161 * 123.29054 * 2 1 3 5 5 N 1.48112 * 103.25612 * 155.71340 * 4 2 1 6 6 C 1.34783 * 127.03144 * 140.67235 * 5 4 2 7 7 O 1.21369 * 119.99893 * 180.02562 * 6 5 4 8 8 C 1.49321 * 120.00233 * 0.04810 * 6 5 4 9 9 O 1.21386 * 119.99541 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99929 * 179.97438 * 8 6 5 11 11 C 1.39746 * 119.99754 * 175.49414 * 10 8 6 12 12 C 1.38991 * 120.00581 * 214.85895 * 11 10 8 13 13 C 1.37969 * 119.99091 * 179.76189 * 12 11 10 14 14 C 1.38937 * 120.00559 * 0.49827 * 13 12 11 15 15 O 1.35762 * 119.98933 * 179.73996 * 14 13 12 16 16 C 1.34798 * 116.99613 * 185.36517 * 15 14 13 17 17 H 1.07998 * 120.00214 * 354.96292 * 16 15 14 18 18 C 1.38654 * 119.99862 * 174.96646 * 16 15 14 19 19 N 1.31556 * 120.00083 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99882 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47041 * 60.00033 * 20 18 16 22 22 H 1.48501 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47281 * 299.99887 * 20 18 16 24 24 C 1.38936 * 120.01335 * 359.76083 * 14 13 12 25 25 C 1.37963 * 120.00927 * 0.02562 * 24 14 13 26 26 C 1.47481 * 105.93570 * 320.71070 * 5 4 2 27 27 C 1.54005 * 107.08007 * 25.44433 * 26 5 4 28 28 H 1.09005 * 110.32334 * 117.69166 * 27 26 5 29 29 C 1.53005 * 110.32642 * 239.80018 * 27 26 5 30 30 H 1.09006 * 109.47097 * 183.29050 * 1 2 3 31 31 H 1.08997 * 109.47397 * 303.28611 * 1 2 3 32 32 H 1.09000 * 109.47351 * 63.29306 * 1 2 3 33 33 H 1.09004 * 110.65919 * 37.27306 * 4 2 1 34 34 H 1.09004 * 110.80357 * 274.22596 * 4 2 1 35 35 H 0.96995 * 120.00337 * 355.48999 * 10 8 6 36 36 H 1.08003 * 120.00661 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.99836 * 180.21433 * 13 12 11 38 38 H 0.96998 * 120.00357 * 180.02562 * 19 18 16 39 39 H 1.08003 * 119.99336 * 179.97438 * 24 14 13 40 40 H 1.07996 * 120.00350 * 179.97438 * 25 24 14 41 41 H 1.08999 * 109.91312 * 266.08431 * 26 5 4 42 42 H 1.08998 * 109.91336 * 144.80743 * 26 5 4 43 43 H 1.09002 * 109.46660 * 58.55199 * 29 27 26 44 44 H 1.09001 * 109.47051 * 178.54646 * 29 27 26 45 45 H 1.09000 * 109.47078 * 298.54966 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7953 1.2112 5 7 3.4279 -1.2099 0.7622 6 6 4.5538 -1.2470 1.5022 7 8 5.5978 -1.6100 1.0007 8 6 4.5167 -0.8422 2.9390 9 8 3.4726 -0.4791 3.4404 10 7 5.6425 -0.8798 3.6789 11 6 5.6290 -0.4124 4.9958 12 6 6.7472 0.2270 5.5180 13 6 6.7317 0.6927 6.8166 14 6 5.6023 0.5134 7.6056 15 8 5.5894 0.9671 8.8851 16 6 4.5081 0.6641 9.6309 17 1 3.6676 0.1558 9.1819 18 6 4.4750 1.0051 10.9744 19 7 5.4985 1.6249 11.5212 20 14 2.9763 0.5859 12.0078 21 1 2.7693 -0.8846 12.0057 22 1 3.1893 1.0533 13.4011 23 1 1.7794 1.2552 11.4382 24 6 4.4863 -0.1305 7.0857 25 6 4.4996 -0.5926 5.7858 26 6 3.2875 -1.5728 -0.6603 27 6 2.0775 -0.7936 -1.2086 28 1 2.3924 -0.1127 -1.9994 29 6 1.0156 -1.7618 -1.7339 30 1 -0.3633 -1.0260 0.0590 31 1 -0.3634 0.5640 0.8590 32 1 -0.3634 0.4619 -0.9180 33 1 1.4558 -1.6668 1.4131 34 1 2.1456 -0.1592 2.0938 35 1 6.4621 -1.2314 3.2975 36 1 7.6268 0.3623 4.9061 37 1 7.5993 1.1927 7.2213 38 1 5.4756 1.8631 12.4612 39 1 3.6087 -0.2701 7.6994 40 1 3.6322 -1.0934 5.3818 41 1 3.1126 -2.6445 -0.7546 42 1 4.1883 -1.2916 -1.2058 43 1 0.7018 -2.4278 -0.9301 44 1 0.1557 -1.1973 -2.0944 45 1 1.4327 -2.3501 -2.5512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076700895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:53 Heat of formation + Delta-G solvation = -76.825931 kcal Electronic energy + Delta-G solvation = -27766.428976 eV Core-core repulsion = 23749.381209 eV Total energy + Delta-G solvation = -4017.047767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.21189 -40.99888 -40.17737 -39.12855 -38.23375 -35.67780 -34.46526 -34.16111 -31.93514 -31.80570 -30.01280 -28.43401 -27.35307 -27.02862 -25.57237 -24.04976 -23.59209 -22.43405 -21.10789 -20.12984 -19.96801 -19.29381 -18.61043 -18.32782 -17.73617 -17.41147 -16.71428 -16.29169 -16.13345 -16.08669 -15.52420 -15.46446 -15.35864 -15.20829 -14.71704 -14.53203 -14.42476 -14.17456 -13.85939 -13.58490 -13.46055 -13.30964 -13.23755 -12.95404 -12.84377 -12.71130 -12.56697 -12.44088 -12.41083 -12.14934 -11.76106 -11.48759 -11.42211 -11.29970 -11.12333 -10.66329 -10.51541 -9.99170 -9.87965 -8.71229 -8.47350 -6.14233 0.01746 0.50273 0.66777 1.11502 1.36195 1.46273 1.51937 2.00555 2.18030 2.35147 2.78691 3.10466 3.17137 3.48314 3.50702 3.58808 3.86373 4.04968 4.07527 4.13338 4.31239 4.44206 4.48306 4.55354 4.56480 4.62017 4.62879 4.71347 4.77443 4.89198 4.92144 5.00964 5.04174 5.08122 5.14561 5.22349 5.27780 5.31862 5.35536 5.36974 5.50472 5.56302 5.65742 5.93619 6.01100 6.06990 6.16975 6.57097 6.83917 6.97141 7.74991 8.74917 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002352 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.600873 B =11901.981196 C =13130.109801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.084 3.916 5 N -0.590 5.590 6 C 0.529 3.471 7 O -0.544 6.544 8 C 0.503 3.497 9 O -0.520 6.520 10 N -0.619 5.619 11 C 0.048 3.952 12 C -0.071 4.071 13 C -0.180 4.180 14 C 0.113 3.887 15 O -0.223 6.223 16 C -0.415 4.415 17 H 0.101 0.899 18 C -0.020 4.020 19 N -0.917 5.917 20 Si 1.016 2.984 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.258 1.258 24 C -0.227 4.227 25 C -0.066 4.066 26 C 0.102 3.898 27 C -0.095 4.095 28 H 0.096 0.904 29 C -0.142 4.142 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.428 0.572 36 H 0.163 0.837 37 H 0.130 0.870 38 H 0.274 0.726 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 -6.809 -27.065 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.094 0.906 4 C -0.037 4.037 5 N -0.323 5.323 6 C 0.312 3.688 7 O -0.422 6.422 8 C 0.285 3.715 9 O -0.396 6.396 10 N -0.266 5.266 11 C -0.045 4.045 12 C -0.091 4.091 13 C -0.199 4.199 14 C 0.062 3.938 15 O -0.130 6.130 16 C -0.491 4.491 17 H 0.118 0.882 18 C -0.218 4.218 19 N -0.554 5.554 20 Si 0.836 3.164 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.247 4.247 25 C -0.086 4.086 26 C -0.019 4.019 27 C -0.114 4.114 28 H 0.114 0.886 29 C -0.199 4.199 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.267 0.733 36 H 0.181 0.819 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.935 -6.545 -26.652 28.862 hybrid contribution 0.093 -0.144 0.790 0.808 sum -8.842 -6.689 -25.862 28.139 Atomic orbital electron populations 1.21789 0.92235 1.03015 1.02612 1.22325 0.97552 0.98789 0.93228 0.90572 1.23293 0.80653 1.00245 0.99528 1.48647 1.08568 1.62503 1.12579 1.19411 0.83382 0.79618 0.86418 1.90756 1.30272 1.48177 1.73010 1.20275 0.84409 0.79380 0.87446 1.90682 1.30207 1.46128 1.72631 1.42782 1.13464 1.59804 1.10533 1.17365 0.97059 1.05844 0.84203 1.20768 0.98269 0.95840 0.94206 1.20298 0.97284 1.07832 0.94532 1.19966 0.94815 0.93171 0.85849 1.83938 1.42806 1.67069 1.19146 1.21766 0.95071 1.40324 0.91920 0.88184 1.26553 1.02227 0.96016 0.97008 1.70163 1.32330 1.39166 1.13771 0.84679 0.75767 0.79392 0.76606 1.18225 1.19525 1.18256 1.21103 0.99464 1.07072 0.97013 1.20925 0.98090 0.97928 0.91658 1.22517 0.99959 1.00535 0.78908 1.22121 0.94287 0.97528 0.97453 0.88618 1.21922 0.98265 0.98645 1.01077 0.91111 0.92790 0.90717 0.89585 0.88561 0.73284 0.81944 0.85166 0.91746 0.85901 0.84861 0.89852 0.90573 0.92381 0.90588 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.03 71.98 0.58 -0.68 16 2 C -0.10 -1.24 3.59 -9.58 -0.03 -1.27 16 3 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.08 1.51 6.07 86.73 0.53 2.03 16 5 N -0.59 -12.16 3.29 -811.12 -2.67 -14.83 16 6 C 0.53 13.57 7.95 87.23 0.69 14.27 16 7 O -0.54 -15.49 16.82 -3.31 -0.06 -15.55 16 8 C 0.50 14.28 7.70 87.23 0.67 14.95 16 9 O -0.52 -16.66 11.12 -3.36 -0.04 -16.70 16 10 N -0.62 -17.01 5.32 -304.75 -1.62 -18.63 16 11 C 0.05 1.62 6.30 38.24 0.24 1.86 16 12 C -0.07 -2.32 9.96 22.39 0.22 -2.09 16 13 C -0.18 -7.34 9.98 22.37 0.22 -7.11 16 14 C 0.11 5.57 6.65 22.60 0.15 5.72 16 15 O -0.22 -13.26 9.75 -22.55 -0.22 -13.48 16 16 C -0.41 -24.03 9.48 67.92 0.64 -23.39 16 17 H 0.10 5.36 5.19 -2.91 -0.02 5.34 16 18 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 19 N -0.92 -55.70 13.67 21.61 0.30 -55.41 16 20 Si 1.02 42.72 29.55 68.60 2.03 44.74 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 C -0.23 -10.18 9.16 22.37 0.20 -9.97 16 25 C -0.07 -2.54 8.69 22.39 0.19 -2.35 16 26 C 0.10 1.50 6.62 86.53 0.57 2.07 16 27 C -0.09 -0.93 3.53 -9.90 -0.03 -0.97 16 28 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 29 C -0.14 -0.91 7.72 71.98 0.56 -0.35 16 30 H 0.07 0.55 6.60 -2.38 -0.02 0.53 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.49 7.64 -2.39 -0.02 0.48 16 33 H 0.09 1.37 8.02 -2.38 -0.02 1.35 16 34 H 0.10 2.22 5.42 -2.38 -0.01 2.21 16 35 H 0.43 9.64 8.30 -92.71 -0.77 8.87 16 36 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.13 5.08 8.06 -2.91 -0.02 5.05 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.12 5.62 5.63 -2.91 -0.02 5.60 16 40 H 0.13 4.91 6.22 -2.91 -0.02 4.89 16 41 H 0.08 1.08 7.68 -2.39 -0.02 1.06 16 42 H 0.08 1.20 8.05 -2.39 -0.02 1.18 16 43 H 0.06 0.42 7.45 -2.39 -0.02 0.40 16 44 H 0.08 0.36 6.90 -2.39 -0.02 0.34 16 45 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -72.61 367.89 3.87 -68.75 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.27 Total: 29.06 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.88 Total: -7.96 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -3.99 Total: -88.87 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.31 Total: -45.73 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -72.61 3.87 -68.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076700895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.079 kcal (2) G-P(sol) polarization free energy of solvation -72.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds