Wall clock time and date at job start Tue Mar 31 2020 17:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.63685 * 2 1 4 4 C 1.54320 * 110.71957 * 236.85656 * 2 1 3 5 5 N 1.47024 * 107.26719 * 219.44041 * 4 2 1 6 6 C 1.34783 * 125.64470 * 178.90507 * 5 4 2 7 7 O 1.21368 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.49315 * 119.99746 * 180.02562 * 6 5 4 9 9 O 1.21390 * 120.00274 * 0.02562 * 8 6 5 10 10 N 1.34783 * 119.99746 * 179.97438 * 8 6 5 11 11 C 1.39738 * 119.99728 * 174.78494 * 10 8 6 12 12 C 1.38998 * 120.00909 * 146.28477 * 11 10 8 13 13 C 1.37962 * 119.99800 * 179.97438 * 12 11 10 14 14 C 1.38938 * 120.00623 * 359.97438 * 13 12 11 15 15 O 1.35756 * 119.99323 * 180.02562 * 14 13 12 16 16 C 1.34800 * 116.99946 * 5.91179 * 15 14 13 17 17 H 1.07997 * 120.00129 * 5.40637 * 16 15 14 18 18 C 1.38653 * 119.99957 * 185.12172 * 16 15 14 19 19 N 1.31563 * 119.99742 * 0.28165 * 18 16 15 20 20 Si 1.86798 * 120.00164 * 180.27618 * 18 16 15 21 21 H 1.48502 * 109.46734 * 90.00336 * 20 18 16 22 22 H 1.48499 * 109.47057 * 210.00117 * 20 18 16 23 23 H 1.48499 * 109.47225 * 330.00388 * 20 18 16 24 24 C 1.38935 * 120.01349 * 0.29864 * 14 13 12 25 25 C 1.37975 * 120.00664 * 359.44936 * 24 14 13 26 26 C 1.47414 * 108.70495 * 359.17211 * 5 4 2 27 27 C 1.54693 * 104.94268 * 23.80568 * 26 5 4 28 28 H 1.08999 * 110.84543 * 81.33939 * 27 26 5 29 29 C 1.52999 * 111.10147 * 205.10640 * 27 26 5 30 30 H 1.09002 * 109.46895 * 181.68876 * 1 2 3 31 31 H 1.08999 * 109.47423 * 301.68950 * 1 2 3 32 32 H 1.09000 * 109.47105 * 61.69338 * 1 2 3 33 33 H 1.08999 * 109.88265 * 100.02652 * 4 2 1 34 34 H 1.08999 * 110.01168 * 338.93272 * 4 2 1 35 35 H 0.96996 * 119.99609 * 354.78308 * 10 8 6 36 36 H 1.08008 * 119.99810 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.00049 * 179.97438 * 13 12 11 38 38 H 0.97008 * 119.99918 * 179.97438 * 19 18 16 39 39 H 1.07995 * 119.99908 * 179.72893 * 24 14 13 40 40 H 1.07998 * 120.00764 * 180.29453 * 25 24 14 41 41 H 1.09004 * 110.37056 * 142.73740 * 26 5 4 42 42 H 1.08999 * 110.37036 * 265.05772 * 26 5 4 43 43 H 1.09002 * 109.46711 * 172.36666 * 29 27 26 44 44 H 1.09003 * 109.47722 * 292.36799 * 29 27 26 45 45 H 1.08997 * 109.47196 * 52.36953 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2446 -1.5494 -0.7415 6 6 3.9916 -2.3821 -1.4933 7 8 3.7180 -2.5535 -2.6633 8 6 5.1558 -3.0936 -0.8868 9 8 5.4292 -2.9226 0.2835 10 7 5.9025 -3.9267 -1.6385 11 6 7.0548 -4.5078 -1.1025 12 6 7.4300 -5.7898 -1.4869 13 6 8.5680 -6.3632 -0.9580 14 6 9.3392 -5.6590 -0.0416 15 8 10.4592 -6.2232 0.4783 16 6 10.8341 -7.4159 -0.0257 17 1 10.3031 -7.8380 -0.8660 18 6 11.9054 -8.0979 0.5308 19 7 12.5523 -7.5836 1.5544 20 14 12.4299 -9.7470 -0.1726 21 1 13.4413 -9.5313 -1.2383 22 1 13.0178 -10.5809 0.9064 23 1 11.2476 -10.4396 -0.7450 24 6 8.9613 -4.3798 0.3472 25 6 7.8262 -3.8039 -0.1853 26 6 3.4600 -1.2551 0.6868 27 6 2.0789 -0.7974 1.2124 28 1 1.4449 -1.6555 1.4352 29 6 2.2278 0.1039 2.4398 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3634 0.5398 0.8744 32 1 -0.3633 0.4873 -0.9048 33 1 2.3741 -0.0991 -1.9979 34 1 1.3141 -1.4730 -1.5825 35 1 5.6400 -4.1228 -2.5514 36 1 6.8308 -6.3371 -2.1996 37 1 8.8594 -7.3594 -1.2563 38 1 13.3016 -8.0609 1.9441 39 1 9.5586 -3.8344 1.0628 40 1 7.5351 -2.8076 0.1132 41 1 3.7889 -2.1510 1.2134 42 1 4.1916 -0.4555 0.8033 43 1 1.2556 0.5190 2.7057 44 1 2.6142 -0.4802 3.2750 45 1 2.9195 0.9152 2.2130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076700898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:03 Heat of formation + Delta-G solvation = -63.939193 kcal Electronic energy + Delta-G solvation = -27586.855974 eV Core-core repulsion = 23570.367018 eV Total energy + Delta-G solvation = -4016.488956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.06186 -39.69735 -38.71055 -38.01106 -36.60874 -34.29591 -33.44906 -32.23070 -31.71557 -30.29555 -28.49748 -27.34922 -26.70967 -25.49624 -24.15352 -22.37076 -22.10435 -21.01628 -20.45497 -19.88580 -18.20007 -17.93814 -17.35166 -16.94372 -16.45075 -16.16046 -15.66719 -14.85940 -14.62778 -14.56693 -14.44148 -14.19365 -14.10832 -13.68855 -13.60337 -13.33290 -13.08268 -13.02822 -12.86863 -12.66602 -12.54981 -12.30781 -11.99001 -11.91916 -11.67958 -11.65542 -11.42485 -11.20458 -11.13837 -11.09779 -10.72898 -10.70282 -10.47047 -9.82211 -9.52092 -9.28412 -9.02361 -8.76558 -8.27732 -7.00808 -6.49081 -4.06651 1.25616 2.11336 2.13485 2.31392 3.09996 3.11759 3.16635 3.22344 3.42605 3.93590 4.01453 4.13324 4.30996 4.39370 4.52351 4.80469 4.91374 4.96977 5.06438 5.06630 5.17906 5.24282 5.26137 5.34335 5.45035 5.50675 5.50800 5.57920 5.63205 5.69274 5.74872 5.81897 5.85059 5.98563 6.05492 6.13059 6.17588 6.70954 6.73896 6.81942 6.98681 7.05123 7.15937 7.29634 7.42111 7.66018 7.71474 7.95069 8.09210 8.96099 9.65333 10.68543 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028806 B = 0.002075 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.781643 B =13493.429719 C =14157.822008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.088 0.912 4 C 0.109 3.891 5 N -0.592 5.592 6 C 0.523 3.477 7 O -0.525 6.525 8 C 0.499 3.501 9 O -0.505 6.505 10 N -0.625 5.625 11 C 0.027 3.973 12 C -0.082 4.082 13 C -0.219 4.219 14 C 0.150 3.850 15 O -0.173 6.173 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.178 4.178 25 C -0.063 4.063 26 C 0.099 3.901 27 C -0.105 4.105 28 H 0.086 0.914 29 C -0.140 4.140 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.413 0.587 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.271 0.729 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.650 13.788 -2.888 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.013 4.013 5 N -0.326 5.326 6 C 0.307 3.693 7 O -0.401 6.401 8 C 0.281 3.719 9 O -0.380 6.380 10 N -0.270 5.270 11 C -0.066 4.066 12 C -0.102 4.102 13 C -0.239 4.239 14 C 0.095 3.905 15 O -0.076 6.076 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.198 4.198 25 C -0.083 4.083 26 C -0.023 4.023 27 C -0.124 4.124 28 H 0.104 0.896 29 C -0.198 4.198 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.185 13.790 -2.415 25.393 hybrid contribution 0.078 -0.964 -0.884 1.311 sum -21.108 12.826 -3.299 24.918 Atomic orbital electron populations 1.21753 0.93549 1.02354 1.02227 1.22327 0.96540 0.99439 0.93758 0.89385 1.22152 0.87323 0.94708 0.97124 1.48202 1.29251 1.42857 1.12246 1.19861 0.83633 0.79989 0.85855 1.90760 1.70299 1.63286 1.15785 1.19889 0.83766 0.81714 0.86568 1.90738 1.69390 1.62622 1.15258 1.42875 1.23556 1.44114 1.16454 1.17216 0.89751 0.94345 1.05252 1.20504 0.97220 0.92246 1.00230 1.20988 0.97495 1.01951 1.03427 1.19447 0.86999 0.92264 0.91766 1.83992 1.34252 1.34008 1.55323 1.21329 1.15239 0.95170 1.15071 0.88987 1.25313 0.95755 0.99542 0.95944 1.70043 1.19715 1.38292 1.21336 0.85697 0.79180 0.79999 0.78475 1.19841 1.20237 1.19162 1.20096 0.99444 0.94516 1.05700 1.20573 0.92793 0.98965 0.95998 1.22766 0.96779 1.03111 0.79653 1.22486 0.96243 0.98806 0.94893 0.89566 1.21683 1.02063 0.99270 0.96749 0.92265 0.91905 0.92217 0.90980 0.90804 0.75022 0.86861 0.84902 0.91925 0.85944 0.85794 0.87733 0.90682 0.92098 0.91890 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 9.13 37.16 0.34 -0.33 16 2 C -0.10 -0.62 3.02 -88.79 -0.27 -0.89 16 3 H 0.09 0.48 8.04 -51.93 -0.42 0.07 16 4 C 0.11 0.93 6.46 -3.07 -0.02 0.91 16 5 N -0.59 -6.60 3.33 -171.22 -0.57 -7.17 16 6 C 0.52 7.17 7.91 -11.65 -0.09 7.08 16 7 O -0.52 -8.01 16.81 5.48 0.09 -7.91 16 8 C 0.50 7.53 7.58 -11.65 -0.09 7.44 16 9 O -0.50 -8.37 11.49 5.46 0.06 -8.31 16 10 N -0.62 -9.42 5.32 -10.27 -0.05 -9.47 16 11 C 0.03 0.47 6.27 -83.69 -0.52 -0.05 16 12 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 13 C -0.22 -4.63 9.12 -39.42 -0.36 -4.99 16 14 C 0.15 3.57 6.65 -39.06 -0.26 3.31 16 15 O -0.17 -4.86 9.75 0.11 0.00 -4.86 16 16 C -0.39 -10.74 9.44 30.89 0.29 -10.45 16 17 H 0.09 2.31 5.29 -52.49 -0.28 2.04 16 18 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 20 Si 0.94 20.20 29.55 -169.99 -5.02 15.17 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.18 -3.80 9.98 -39.42 -0.39 -4.20 16 25 C -0.06 -1.21 8.64 -39.40 -0.34 -1.55 16 26 C 0.10 0.96 5.52 -2.65 -0.01 0.94 16 27 C -0.11 -0.72 3.07 -88.59 -0.27 -0.99 16 28 H 0.09 0.60 8.04 -51.93 -0.42 0.18 16 29 C -0.14 -0.78 9.31 37.16 0.35 -0.43 16 30 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.63 7.83 -51.93 -0.41 0.23 16 35 H 0.41 5.36 8.30 -40.82 -0.34 5.02 16 36 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 40 H 0.12 2.25 6.44 -52.49 -0.34 1.91 16 41 H 0.10 1.20 6.17 -51.93 -0.32 0.88 16 42 H 0.07 0.72 7.98 -51.93 -0.41 0.30 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.32 8.07 -51.93 -0.42 -0.09 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -31.84 373.94 -7.41 -39.24 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.17 Total: 6.90 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.15 Total: -5.10 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.13 Total: -40.78 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.16 Total: -21.08 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.84 -7.41 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076700898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.695 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds