Wall clock time and date at job start Tue Mar 31 2020 17:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.63685 * 2 1 4 4 C 1.54320 * 110.71957 * 236.85656 * 2 1 3 5 5 N 1.47024 * 107.26719 * 219.44041 * 4 2 1 6 6 C 1.34783 * 125.64470 * 178.90507 * 5 4 2 7 7 O 1.21368 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.49315 * 119.99746 * 180.02562 * 6 5 4 9 9 O 1.21390 * 120.00274 * 0.02562 * 8 6 5 10 10 N 1.34783 * 119.99746 * 179.97438 * 8 6 5 11 11 C 1.39738 * 119.99728 * 174.78494 * 10 8 6 12 12 C 1.38998 * 120.00909 * 146.28477 * 11 10 8 13 13 C 1.37962 * 119.99800 * 179.97438 * 12 11 10 14 14 C 1.38938 * 120.00623 * 359.97438 * 13 12 11 15 15 O 1.35756 * 119.99323 * 180.02562 * 14 13 12 16 16 C 1.34800 * 116.99946 * 5.91179 * 15 14 13 17 17 H 1.07997 * 120.00129 * 5.40637 * 16 15 14 18 18 C 1.38653 * 119.99957 * 185.12172 * 16 15 14 19 19 N 1.31563 * 119.99742 * 0.28165 * 18 16 15 20 20 Si 1.86798 * 120.00164 * 180.27618 * 18 16 15 21 21 H 1.48502 * 109.46734 * 90.00336 * 20 18 16 22 22 H 1.48499 * 109.47057 * 210.00117 * 20 18 16 23 23 H 1.48499 * 109.47225 * 330.00388 * 20 18 16 24 24 C 1.38935 * 120.01349 * 0.29864 * 14 13 12 25 25 C 1.37975 * 120.00664 * 359.44936 * 24 14 13 26 26 C 1.47414 * 108.70495 * 359.17211 * 5 4 2 27 27 C 1.54693 * 104.94268 * 23.80568 * 26 5 4 28 28 H 1.08999 * 110.84543 * 81.33939 * 27 26 5 29 29 C 1.52999 * 111.10147 * 205.10640 * 27 26 5 30 30 H 1.09002 * 109.46895 * 181.68876 * 1 2 3 31 31 H 1.08999 * 109.47423 * 301.68950 * 1 2 3 32 32 H 1.09000 * 109.47105 * 61.69338 * 1 2 3 33 33 H 1.08999 * 109.88265 * 100.02652 * 4 2 1 34 34 H 1.08999 * 110.01168 * 338.93272 * 4 2 1 35 35 H 0.96996 * 119.99609 * 354.78308 * 10 8 6 36 36 H 1.08008 * 119.99810 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.00049 * 179.97438 * 13 12 11 38 38 H 0.97008 * 119.99918 * 179.97438 * 19 18 16 39 39 H 1.07995 * 119.99908 * 179.72893 * 24 14 13 40 40 H 1.07998 * 120.00764 * 180.29453 * 25 24 14 41 41 H 1.09004 * 110.37056 * 142.73740 * 26 5 4 42 42 H 1.08999 * 110.37036 * 265.05772 * 26 5 4 43 43 H 1.09002 * 109.46711 * 172.36666 * 29 27 26 44 44 H 1.09003 * 109.47722 * 292.36799 * 29 27 26 45 45 H 1.08997 * 109.47196 * 52.36953 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2446 -1.5494 -0.7415 6 6 3.9916 -2.3821 -1.4933 7 8 3.7180 -2.5535 -2.6633 8 6 5.1558 -3.0936 -0.8868 9 8 5.4292 -2.9226 0.2835 10 7 5.9025 -3.9267 -1.6385 11 6 7.0548 -4.5078 -1.1025 12 6 7.4300 -5.7898 -1.4869 13 6 8.5680 -6.3632 -0.9580 14 6 9.3392 -5.6590 -0.0416 15 8 10.4592 -6.2232 0.4783 16 6 10.8341 -7.4159 -0.0257 17 1 10.3031 -7.8380 -0.8660 18 6 11.9054 -8.0979 0.5308 19 7 12.5523 -7.5836 1.5544 20 14 12.4299 -9.7470 -0.1726 21 1 13.4413 -9.5313 -1.2383 22 1 13.0178 -10.5809 0.9064 23 1 11.2476 -10.4396 -0.7450 24 6 8.9613 -4.3798 0.3472 25 6 7.8262 -3.8039 -0.1853 26 6 3.4600 -1.2551 0.6868 27 6 2.0789 -0.7974 1.2124 28 1 1.4449 -1.6555 1.4352 29 6 2.2278 0.1039 2.4398 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3634 0.5398 0.8744 32 1 -0.3633 0.4873 -0.9048 33 1 2.3741 -0.0991 -1.9979 34 1 1.3141 -1.4730 -1.5825 35 1 5.6400 -4.1228 -2.5514 36 1 6.8308 -6.3371 -2.1996 37 1 8.8594 -7.3594 -1.2563 38 1 13.3016 -8.0609 1.9441 39 1 9.5586 -3.8344 1.0628 40 1 7.5351 -2.8076 0.1132 41 1 3.7889 -2.1510 1.2134 42 1 4.1916 -0.4555 0.8033 43 1 1.2556 0.5190 2.7057 44 1 2.6142 -0.4802 3.2750 45 1 2.9195 0.9152 2.2130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076700898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:02 Heat of formation + Delta-G solvation = -84.259701 kcal Electronic energy + Delta-G solvation = -27587.737138 eV Core-core repulsion = 23570.367018 eV Total energy + Delta-G solvation = -4017.370119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.21481 -40.99080 -40.14648 -39.04939 -38.22448 -35.66181 -34.37626 -34.13995 -32.26194 -31.93662 -29.99229 -28.27880 -27.36348 -27.35671 -25.29427 -23.95931 -23.07436 -22.31283 -21.23546 -20.95375 -19.88923 -19.21178 -18.92488 -18.20963 -17.60835 -17.39530 -16.79851 -16.37759 -16.06170 -15.90964 -15.53820 -15.34321 -15.17756 -15.02095 -14.75648 -14.57473 -14.35856 -14.14796 -13.81729 -13.71494 -13.57773 -13.36017 -13.30336 -13.11415 -12.84154 -12.76783 -12.58618 -12.48060 -12.36280 -12.11358 -11.77156 -11.67460 -11.47585 -11.30217 -11.11256 -10.69290 -10.56654 -9.93754 -9.89386 -8.69702 -8.46543 -6.13490 0.00581 0.48950 0.68541 1.12034 1.37611 1.46423 1.54950 2.00374 2.18535 2.34949 2.79258 3.12323 3.16080 3.46754 3.47466 3.54457 3.79398 4.00605 4.07337 4.19651 4.30386 4.45007 4.49559 4.51292 4.55319 4.61184 4.63956 4.72167 4.76927 4.84665 4.97810 4.99942 5.03581 5.10644 5.12511 5.20768 5.22153 5.23947 5.35779 5.43800 5.46694 5.48788 5.62503 5.91976 6.01181 6.05432 6.16622 6.56295 6.83508 6.97863 7.76760 8.76340 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028806 B = 0.002075 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.781643 B =13493.429719 C =14157.822008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.099 0.901 4 C 0.102 3.898 5 N -0.586 5.586 6 C 0.524 3.476 7 O -0.543 6.543 8 C 0.502 3.498 9 O -0.519 6.519 10 N -0.621 5.621 11 C 0.052 3.948 12 C -0.074 4.074 13 C -0.219 4.219 14 C 0.113 3.887 15 O -0.226 6.226 16 C -0.412 4.412 17 H 0.107 0.893 18 C -0.024 4.024 19 N -0.919 5.919 20 Si 1.019 2.981 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.250 1.250 24 C -0.185 4.185 25 C -0.065 4.065 26 C 0.094 3.906 27 C -0.098 4.098 28 H 0.086 0.914 29 C -0.137 4.137 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.427 0.573 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.273 0.727 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.764 14.468 -4.369 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.118 0.882 4 C -0.019 4.019 5 N -0.319 5.319 6 C 0.307 3.693 7 O -0.421 6.421 8 C 0.284 3.716 9 O -0.395 6.395 10 N -0.268 5.268 11 C -0.041 4.041 12 C -0.094 4.094 13 C -0.239 4.239 14 C 0.062 3.938 15 O -0.132 6.132 16 C -0.488 4.488 17 H 0.124 0.876 18 C -0.221 4.221 19 N -0.557 5.557 20 Si 0.839 3.161 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.174 1.174 24 C -0.204 4.204 25 C -0.085 4.085 26 C -0.028 4.028 27 C -0.117 4.117 28 H 0.104 0.896 29 C -0.195 4.195 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.266 0.734 36 H 0.173 0.827 37 H 0.152 0.848 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.153 0.847 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.384 14.525 -3.916 28.651 hybrid contribution 0.712 -0.890 -0.469 1.232 sum -23.672 13.636 -4.385 27.668 Atomic orbital electron populations 1.21745 0.92153 1.02472 1.03216 1.22327 0.97520 0.99332 0.91815 0.88240 1.22420 0.86291 0.94743 0.98442 1.48353 1.29118 1.41690 1.12716 1.19479 0.83521 0.80585 0.85733 1.90757 1.70780 1.64288 1.16318 1.20250 0.83982 0.81067 0.86298 1.90750 1.69867 1.62832 1.16060 1.42817 1.22686 1.44077 1.17206 1.17333 0.89642 0.93957 1.03132 1.20824 0.96226 0.92208 1.00115 1.21120 0.98037 1.01977 1.02753 1.19911 0.87279 0.93346 0.93239 1.83960 1.36725 1.35040 1.57510 1.21853 1.15879 0.95307 1.15794 0.87624 1.26616 0.95526 1.03744 0.96250 1.70193 1.21104 1.40618 1.23785 0.84571 0.79217 0.74554 0.77790 1.18875 1.19857 1.17378 1.20238 1.00233 0.94053 1.05923 1.20702 0.92099 0.99486 0.96194 1.22864 0.98814 1.02323 0.78762 1.22458 0.94264 0.99226 0.95719 0.89577 1.21675 1.03051 0.98956 0.95795 0.92618 0.90697 0.91475 0.90640 0.90667 0.73371 0.82688 0.84846 0.91832 0.86278 0.84669 0.89707 0.90450 0.90497 0.92390 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.13 71.98 0.66 -0.21 16 2 C -0.09 -0.85 3.02 -9.61 -0.03 -0.88 16 3 H 0.10 0.75 8.04 -2.39 -0.02 0.73 16 4 C 0.10 1.51 6.46 86.73 0.56 2.07 16 5 N -0.59 -12.05 3.33 -813.97 -2.71 -14.76 16 6 C 0.52 13.45 7.91 87.23 0.69 14.14 16 7 O -0.54 -15.52 16.81 -3.30 -0.06 -15.57 16 8 C 0.50 14.24 7.58 87.23 0.66 14.90 16 9 O -0.52 -16.57 11.49 -3.37 -0.04 -16.61 16 10 N -0.62 -17.18 5.32 -304.74 -1.62 -18.81 16 11 C 0.05 1.77 6.27 38.25 0.24 2.01 16 12 C -0.07 -2.49 9.96 22.39 0.22 -2.27 16 13 C -0.22 -9.21 9.12 22.37 0.20 -9.00 16 14 C 0.11 5.59 6.65 22.60 0.15 5.74 16 15 O -0.23 -13.43 9.75 -22.51 -0.22 -13.65 16 16 C -0.41 -23.48 9.44 67.92 0.64 -22.84 16 17 H 0.11 5.42 5.29 -2.91 -0.02 5.41 16 18 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 19 N -0.92 -55.98 13.67 21.61 0.30 -55.68 16 20 Si 1.02 42.11 29.55 68.60 2.03 44.14 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 24 C -0.18 -8.11 9.98 22.37 0.22 -7.89 16 25 C -0.06 -2.44 8.64 22.39 0.19 -2.25 16 26 C 0.09 1.68 5.52 86.78 0.48 2.16 16 27 C -0.10 -1.12 3.07 -9.48 -0.03 -1.15 16 28 H 0.09 1.02 8.04 -2.39 -0.02 1.00 16 29 C -0.14 -1.19 9.31 71.98 0.67 -0.52 16 30 H 0.05 0.41 8.13 -2.39 -0.02 0.39 16 31 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.12 7.83 -2.39 -0.02 1.11 16 35 H 0.43 9.79 8.30 -92.71 -0.77 9.03 16 36 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 37 H 0.13 5.54 5.71 -2.91 -0.02 5.53 16 38 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 39 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 40 H 0.14 4.78 6.44 -2.91 -0.02 4.76 16 41 H 0.08 1.89 6.17 -2.38 -0.01 1.88 16 42 H 0.08 1.36 7.98 -2.39 -0.02 1.34 16 43 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.52 8.07 -2.39 -0.02 0.50 16 Total: -1.00 -72.54 373.94 3.94 -68.60 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.26 Total: 29.18 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 6.00 Total: -6.84 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -4.03 Total: -89.24 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.31 Total: -45.83 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -72.54 3.94 -68.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076700898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.659 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds