Wall clock time and date at job start Tue Mar 31 2020 17:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.52444 * 2 1 4 4 C 1.53039 * 109.49536 * 120.08358 * 2 1 3 5 5 C 1.53038 * 109.53554 * 181.31461 * 4 2 1 6 6 C 1.53192 * 109.31563 * 298.63399 * 5 4 2 7 7 N 1.46927 * 108.77321 * 54.63140 * 6 5 4 8 8 C 1.34781 * 120.62480 * 126.36848 * 7 6 5 9 9 O 1.21362 * 119.99598 * 187.19099 * 8 7 6 10 10 C 1.49353 * 120.00025 * 7.19877 * 8 7 6 11 11 O 1.21370 * 119.99990 * 6.64946 * 10 8 7 12 12 N 1.34783 * 119.99794 * 186.65170 * 10 8 7 13 13 C 1.39721 * 119.99993 * 175.22891 * 12 10 8 14 14 C 1.39021 * 120.03631 * 35.09919 * 13 12 10 15 15 C 1.38147 * 120.05859 * 179.97438 * 14 13 12 16 16 C 1.38183 * 120.14107 * 359.74047 * 15 14 13 17 17 C 1.38918 * 120.08555 * 0.51637 * 16 15 14 18 18 O 1.35751 * 120.03209 * 179.76342 * 17 16 15 19 19 C 1.34834 * 116.99673 * 184.92351 * 18 17 16 20 20 H 1.08001 * 120.00176 * 354.97431 * 19 18 17 21 21 C 1.38652 * 119.99806 * 174.98325 * 19 18 17 22 22 N 1.31563 * 120.00103 * 359.71689 * 21 19 18 23 23 Si 1.86801 * 120.00055 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47256 * 89.99534 * 23 21 19 25 25 H 1.48502 * 109.46843 * 209.99882 * 23 21 19 26 26 H 1.48503 * 109.46939 * 329.99284 * 23 21 19 27 27 C 1.38761 * 120.04205 * 215.07492 * 13 12 10 28 28 C 1.46926 * 118.74247 * 306.64687 * 7 6 5 29 29 H 1.08995 * 109.46817 * 299.92128 * 1 2 3 30 30 H 1.09003 * 109.46761 * 59.91374 * 1 2 3 31 31 H 1.08993 * 109.47415 * 179.91683 * 1 2 3 32 32 H 1.08996 * 109.45890 * 61.29402 * 4 2 1 33 33 H 1.08998 * 109.46191 * 301.33445 * 4 2 1 34 34 H 1.09008 * 109.49548 * 178.68224 * 5 4 2 35 35 H 1.08993 * 109.52664 * 58.60457 * 5 4 2 36 36 H 1.09003 * 109.58279 * 294.84824 * 6 5 4 37 37 H 1.08994 * 109.59070 * 174.42741 * 6 5 4 38 38 H 0.96999 * 119.99979 * 355.23306 * 12 10 8 39 39 H 1.07995 * 119.97596 * 359.95614 * 14 13 12 40 40 H 1.07994 * 119.92880 * 180.02562 * 15 14 13 41 41 H 1.08004 * 119.95899 * 180.27663 * 16 15 14 42 42 H 0.96994 * 120.00281 * 180.02562 * 22 21 19 43 43 H 1.07995 * 120.07780 * 0.02562 * 27 13 12 44 44 H 1.08996 * 109.58349 * 173.14038 * 28 7 6 45 45 H 1.08994 * 109.58318 * 293.57085 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5708 -0.6951 1.2659 6 6 4.1053 -1.4268 0.0307 7 7 3.5045 -0.8292 -1.1696 8 6 4.2812 -0.3856 -2.1779 9 8 3.7850 0.2225 -3.1036 10 6 5.7523 -0.6426 -2.1561 11 8 6.2317 -1.3523 -1.2961 12 7 6.5475 -0.0864 -3.0915 13 6 7.9335 -0.2445 -3.0139 14 6 8.4726 -1.4331 -2.5350 15 6 9.8429 -1.5902 -2.4585 16 6 10.6819 -0.5692 -2.8624 17 6 10.1497 0.6230 -3.3369 18 8 10.9749 1.6271 -3.7289 19 6 10.3960 2.7925 -4.0821 20 1 9.3196 2.8700 -4.1235 21 6 11.1827 3.8912 -4.3924 22 7 12.4939 3.7983 -4.3368 23 14 10.3808 5.5056 -4.8825 24 1 10.1447 6.3293 -3.6697 25 1 11.2750 6.2399 -5.8134 26 1 9.0852 5.2308 -5.5542 27 6 8.7737 0.7844 -3.4151 28 6 2.0415 -0.7187 -1.2472 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5152 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6967 -1.7573 1.2352 33 1 1.6582 -0.2246 2.1389 34 1 3.9334 -1.1899 2.1671 35 1 3.9164 0.3385 1.2544 36 1 3.8375 -2.4819 0.0867 37 1 5.1895 -1.3248 -0.0138 38 1 6.1575 0.4237 -3.8185 39 1 7.8195 -2.2344 -2.2222 40 1 10.2594 -2.5146 -2.0866 41 1 11.7529 -0.6968 -2.8056 42 1 13.0442 4.5670 -4.5535 43 1 8.3576 1.7088 -3.7874 44 1 1.7647 -0.1496 -2.1346 45 1 1.6021 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080230367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:36 Heat of formation + Delta-G solvation = -56.584716 kcal Electronic energy + Delta-G solvation = -28115.739902 eV Core-core repulsion = 24099.569860 eV Total energy + Delta-G solvation = -4016.170042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25796 -39.66543 -38.62054 -37.91300 -36.61265 -34.69921 -33.76366 -32.27757 -32.17047 -29.60073 -28.80425 -27.49746 -26.37384 -25.37692 -24.00166 -22.61263 -21.93479 -21.52546 -20.40980 -19.80487 -18.11148 -18.03869 -17.17691 -16.96627 -16.19466 -15.67204 -15.57868 -15.31607 -15.00613 -14.73426 -14.51182 -14.32595 -14.16264 -13.89830 -13.74394 -13.59135 -13.34146 -13.04740 -12.96518 -12.51303 -12.44613 -12.18915 -11.83445 -11.72950 -11.57108 -11.40850 -11.20023 -11.10379 -10.99034 -10.89378 -10.82359 -10.73516 -10.47723 -9.93872 -9.54898 -9.11801 -8.99698 -8.84038 -7.86396 -7.25535 -6.48270 -4.08282 1.15853 2.02697 2.21017 2.34708 3.09678 3.12250 3.14308 3.16863 3.37140 3.93967 4.18079 4.36848 4.43101 4.51685 4.52500 4.73483 4.97615 5.04676 5.06697 5.17067 5.22799 5.24480 5.34430 5.39001 5.44718 5.58823 5.62924 5.66504 5.74420 5.77567 5.80916 5.91667 6.01497 6.04201 6.09004 6.15136 6.25576 6.52499 6.75039 6.86082 6.92568 7.05036 7.21881 7.34950 7.38136 7.64576 7.70308 7.94528 7.98948 8.97091 9.65280 10.69424 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.002711 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.696436 B =10324.435883 C =11501.160536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.063 3.937 7 N -0.581 5.581 8 C 0.511 3.489 9 O -0.521 6.521 10 C 0.507 3.493 11 O -0.494 6.494 12 N -0.632 5.632 13 C 0.169 3.831 14 C -0.203 4.203 15 C -0.064 4.064 16 C -0.193 4.193 17 C 0.167 3.833 18 O -0.173 6.173 19 C -0.394 4.394 20 H 0.091 0.909 21 C 0.041 3.959 22 N -0.861 5.861 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.249 4.249 28 C 0.112 3.888 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.146 0.854 38 H 0.419 0.581 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.271 0.729 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.584 -9.428 8.856 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.094 0.906 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.058 4.058 7 N -0.314 5.314 8 C 0.294 3.706 9 O -0.398 6.398 10 C 0.289 3.711 11 O -0.370 6.370 12 N -0.277 5.277 13 C 0.076 3.924 14 C -0.224 4.224 15 C -0.083 4.083 16 C -0.213 4.213 17 C 0.112 3.888 18 O -0.077 6.077 19 C -0.470 4.470 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.495 5.495 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.271 4.271 28 C -0.010 4.010 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.163 0.837 38 H 0.256 0.744 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.080 0.920 43 H 0.150 0.850 44 H 0.113 0.887 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.093 -9.413 8.894 23.905 hybrid contribution -0.784 1.131 -0.512 1.468 sum -20.878 -8.283 8.383 23.974 Atomic orbital electron populations 1.21761 0.94159 1.02092 1.02219 1.21433 0.96082 1.00344 0.94839 0.90612 1.21627 0.95657 1.00718 0.97405 1.21954 0.95632 1.01647 0.98223 1.23009 1.04006 0.96528 0.82269 1.47923 1.06631 1.58887 1.17988 1.20029 0.87539 0.79934 0.83111 1.90762 1.74898 1.39066 1.35028 1.20089 0.87472 0.81328 0.82175 1.90464 1.75116 1.36222 1.35244 1.43148 1.05597 1.51705 1.27238 1.17419 0.80034 0.94312 1.00625 1.20681 0.95220 0.96922 1.09568 1.20553 0.92523 0.97534 0.97721 1.20313 0.99921 0.93127 1.07956 1.19058 0.88648 0.89632 0.91439 1.84011 1.32762 1.19292 1.71594 1.21295 0.92691 0.85886 1.47123 0.89135 1.25280 0.95414 0.98866 0.96818 1.70033 1.03542 1.31258 1.44713 0.85725 0.78808 0.80300 0.78703 1.19860 1.20203 1.19153 1.20849 0.93236 0.99614 1.13365 1.21726 0.78557 1.01209 0.99510 0.92181 0.92295 0.92425 0.91702 0.91625 0.90345 0.91538 0.91298 0.83697 0.74362 0.85699 0.86398 0.86213 0.91952 0.85002 0.88737 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.11 -0.81 2.86 -90.72 -0.26 -1.07 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.12 -0.80 5.17 -26.69 -0.14 -0.94 16 5 C -0.14 -1.11 6.08 -26.61 -0.16 -1.28 16 6 C 0.06 0.63 6.02 -3.71 -0.02 0.60 16 7 N -0.58 -6.51 2.98 -173.58 -0.52 -7.03 16 8 C 0.51 7.03 7.74 -11.63 -0.09 6.94 16 9 O -0.52 -8.05 15.91 5.49 0.09 -7.96 16 10 C 0.51 7.61 7.60 -11.63 -0.09 7.52 16 11 O -0.49 -7.77 10.56 5.48 0.06 -7.71 16 12 N -0.63 -10.03 5.32 -10.31 -0.05 -10.09 16 13 C 0.17 3.15 6.29 -83.78 -0.53 2.63 16 14 C -0.20 -3.69 8.70 -39.32 -0.34 -4.03 16 15 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 16 C -0.19 -4.00 9.99 -39.35 -0.39 -4.39 16 17 C 0.17 3.94 6.65 -39.13 -0.26 3.68 16 18 O -0.17 -4.85 9.76 0.04 0.00 -4.85 16 19 C -0.39 -10.81 9.49 30.89 0.29 -10.52 16 20 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 21 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 22 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 23 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 C -0.25 -5.31 9.08 -39.19 -0.36 -5.66 16 28 C 0.11 1.01 5.70 -3.93 -0.02 0.99 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.15 1.76 4.22 -55.30 -0.23 1.53 16 38 H 0.42 6.02 8.30 -40.82 -0.34 5.68 16 39 H 0.13 2.15 6.21 -52.49 -0.33 1.82 16 40 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 42 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 44 H 0.09 0.95 7.00 -51.93 -0.36 0.59 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -31.04 367.56 -7.71 -38.75 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.04 Total: 8.75 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.52 Total: -6.55 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.19 Total: -41.29 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.15 Total: -20.52 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.04 -7.71 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080230367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.833 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds