Wall clock time and date at job start Tue Mar 31 2020 17:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.52444 * 2 1 4 4 C 1.53039 * 109.49536 * 120.08358 * 2 1 3 5 5 C 1.53038 * 109.53554 * 181.31461 * 4 2 1 6 6 C 1.53192 * 109.31563 * 298.63399 * 5 4 2 7 7 N 1.46927 * 108.77321 * 54.63140 * 6 5 4 8 8 C 1.34781 * 120.62480 * 126.36848 * 7 6 5 9 9 O 1.21362 * 119.99598 * 187.19099 * 8 7 6 10 10 C 1.49353 * 120.00025 * 7.19877 * 8 7 6 11 11 O 1.21370 * 119.99990 * 6.64946 * 10 8 7 12 12 N 1.34783 * 119.99794 * 186.65170 * 10 8 7 13 13 C 1.39721 * 119.99993 * 175.22891 * 12 10 8 14 14 C 1.39021 * 120.03631 * 35.09919 * 13 12 10 15 15 C 1.38147 * 120.05859 * 179.97438 * 14 13 12 16 16 C 1.38183 * 120.14107 * 359.74047 * 15 14 13 17 17 C 1.38918 * 120.08555 * 0.51637 * 16 15 14 18 18 O 1.35751 * 120.03209 * 179.76342 * 17 16 15 19 19 C 1.34834 * 116.99673 * 184.92351 * 18 17 16 20 20 H 1.08001 * 120.00176 * 354.97431 * 19 18 17 21 21 C 1.38652 * 119.99806 * 174.98325 * 19 18 17 22 22 N 1.31563 * 120.00103 * 359.71689 * 21 19 18 23 23 Si 1.86801 * 120.00055 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47256 * 89.99534 * 23 21 19 25 25 H 1.48502 * 109.46843 * 209.99882 * 23 21 19 26 26 H 1.48503 * 109.46939 * 329.99284 * 23 21 19 27 27 C 1.38761 * 120.04205 * 215.07492 * 13 12 10 28 28 C 1.46926 * 118.74247 * 306.64687 * 7 6 5 29 29 H 1.08995 * 109.46817 * 299.92128 * 1 2 3 30 30 H 1.09003 * 109.46761 * 59.91374 * 1 2 3 31 31 H 1.08993 * 109.47415 * 179.91683 * 1 2 3 32 32 H 1.08996 * 109.45890 * 61.29402 * 4 2 1 33 33 H 1.08998 * 109.46191 * 301.33445 * 4 2 1 34 34 H 1.09008 * 109.49548 * 178.68224 * 5 4 2 35 35 H 1.08993 * 109.52664 * 58.60457 * 5 4 2 36 36 H 1.09003 * 109.58279 * 294.84824 * 6 5 4 37 37 H 1.08994 * 109.59070 * 174.42741 * 6 5 4 38 38 H 0.96999 * 119.99979 * 355.23306 * 12 10 8 39 39 H 1.07995 * 119.97596 * 359.95614 * 14 13 12 40 40 H 1.07994 * 119.92880 * 180.02562 * 15 14 13 41 41 H 1.08004 * 119.95899 * 180.27663 * 16 15 14 42 42 H 0.96994 * 120.00281 * 180.02562 * 22 21 19 43 43 H 1.07995 * 120.07780 * 0.02562 * 27 13 12 44 44 H 1.08996 * 109.58349 * 173.14038 * 28 7 6 45 45 H 1.08994 * 109.58318 * 293.57085 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5708 -0.6951 1.2659 6 6 4.1053 -1.4268 0.0307 7 7 3.5045 -0.8292 -1.1696 8 6 4.2812 -0.3856 -2.1779 9 8 3.7850 0.2225 -3.1036 10 6 5.7523 -0.6426 -2.1561 11 8 6.2317 -1.3523 -1.2961 12 7 6.5475 -0.0864 -3.0915 13 6 7.9335 -0.2445 -3.0139 14 6 8.4726 -1.4331 -2.5350 15 6 9.8429 -1.5902 -2.4585 16 6 10.6819 -0.5692 -2.8624 17 6 10.1497 0.6230 -3.3369 18 8 10.9749 1.6271 -3.7289 19 6 10.3960 2.7925 -4.0821 20 1 9.3196 2.8700 -4.1235 21 6 11.1827 3.8912 -4.3924 22 7 12.4939 3.7983 -4.3368 23 14 10.3808 5.5056 -4.8825 24 1 10.1447 6.3293 -3.6697 25 1 11.2750 6.2399 -5.8134 26 1 9.0852 5.2308 -5.5542 27 6 8.7737 0.7844 -3.4151 28 6 2.0415 -0.7187 -1.2472 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5152 -0.8892 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6967 -1.7573 1.2352 33 1 1.6582 -0.2246 2.1389 34 1 3.9334 -1.1899 2.1671 35 1 3.9164 0.3385 1.2544 36 1 3.8375 -2.4819 0.0867 37 1 5.1895 -1.3248 -0.0138 38 1 6.1575 0.4237 -3.8185 39 1 7.8195 -2.2344 -2.2222 40 1 10.2594 -2.5146 -2.0866 41 1 11.7529 -0.6968 -2.8056 42 1 13.0442 4.5670 -4.5535 43 1 8.3576 1.7088 -3.7874 44 1 1.7647 -0.1496 -2.1346 45 1 1.6021 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080230367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:34 Heat of formation + Delta-G solvation = -76.071930 kcal Electronic energy + Delta-G solvation = -28116.584931 eV Core-core repulsion = 24099.569860 eV Total energy + Delta-G solvation = -4017.015071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.41396 -41.00758 -40.07078 -38.86800 -38.21837 -36.00438 -34.68096 -34.24422 -32.87555 -31.15868 -30.42896 -28.32020 -27.40013 -27.09770 -25.12744 -23.57666 -23.28903 -22.83902 -21.51952 -20.77511 -19.81874 -19.40854 -18.60797 -18.12337 -17.33510 -17.08359 -16.79804 -16.61446 -16.22553 -16.02223 -15.82253 -15.54589 -15.37587 -15.19050 -15.07553 -14.63289 -14.50303 -14.22407 -14.11976 -13.70201 -13.58965 -13.29787 -13.13070 -12.88422 -12.74626 -12.63403 -12.51306 -12.37240 -12.13787 -12.04731 -11.86062 -11.70069 -11.45798 -11.36299 -11.33806 -10.78105 -10.24495 -9.87996 -9.43956 -8.95668 -8.48040 -6.16656 -0.08808 0.56746 0.69073 1.09884 1.35158 1.43733 1.51737 1.93975 2.16379 2.29013 2.80145 3.05264 3.13719 3.48117 3.72103 3.82293 3.89698 4.05194 4.07773 4.28442 4.29703 4.33329 4.41346 4.51510 4.57966 4.61196 4.65128 4.74355 4.83714 4.86887 4.95818 5.03082 5.04337 5.09438 5.14252 5.20462 5.26560 5.28287 5.33971 5.42682 5.48111 5.62978 5.64869 5.87290 6.00030 6.06037 6.16354 6.53190 6.73164 6.96596 7.74858 8.74613 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.002711 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.696436 B =10324.435883 C =11501.160536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.058 0.942 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.061 3.939 7 N -0.572 5.572 8 C 0.511 3.489 9 O -0.544 6.544 10 C 0.509 3.491 11 O -0.499 6.499 12 N -0.633 5.633 13 C 0.175 3.825 14 C -0.191 4.191 15 C -0.049 4.049 16 C -0.204 4.204 17 C 0.133 3.867 18 O -0.223 6.223 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.019 4.019 22 N -0.917 5.917 23 Si 1.015 2.985 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.253 1.253 27 C -0.256 4.256 28 C 0.108 3.892 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.425 0.575 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.123 0.877 42 H 0.273 0.727 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.670 -11.044 10.313 28.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.076 0.924 4 C -0.150 4.150 5 C -0.172 4.172 6 C -0.060 4.060 7 N -0.304 5.304 8 C 0.293 3.707 9 O -0.423 6.423 10 C 0.292 3.708 11 O -0.375 6.375 12 N -0.279 5.279 13 C 0.081 3.919 14 C -0.211 4.211 15 C -0.067 4.067 16 C -0.224 4.224 17 C 0.082 3.918 18 O -0.130 6.130 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.217 4.217 22 N -0.555 5.555 23 Si 0.834 3.166 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.277 4.277 28 C -0.013 4.013 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.143 0.857 38 H 0.264 0.736 39 H 0.162 0.838 40 H 0.179 0.821 41 H 0.141 0.859 42 H 0.082 0.918 43 H 0.143 0.857 44 H 0.100 0.900 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.245 -11.089 10.397 27.774 hybrid contribution -0.001 1.318 -0.797 1.541 sum -23.246 -9.770 9.600 26.981 Atomic orbital electron populations 1.21732 0.92555 1.02988 1.02518 1.21408 0.97331 0.99201 0.94428 0.92371 1.21620 0.94403 1.01597 0.97343 1.21943 0.96763 1.00601 0.97867 1.23034 1.02809 0.97752 0.82371 1.48092 1.07519 1.57395 1.17417 1.19761 0.86877 0.80385 0.83684 1.90759 1.74924 1.40478 1.36112 1.20381 0.88091 0.80750 0.81530 1.90482 1.75586 1.36278 1.35144 1.43133 1.04522 1.52302 1.27952 1.17440 0.81220 0.93740 0.99476 1.21047 0.95714 0.96724 1.07651 1.20991 0.92070 0.98026 0.95644 1.20578 1.00753 0.92931 1.08121 1.19597 0.89594 0.89907 0.92726 1.83978 1.34423 1.20337 1.74220 1.21771 0.93411 0.86445 1.47369 0.88208 1.26520 0.95970 1.02604 0.96619 1.70170 1.05324 1.32626 1.47350 0.84640 0.78214 0.75101 0.78639 1.18993 1.19480 1.17707 1.20847 0.92831 1.00248 1.13800 1.21953 0.77006 1.02475 0.99893 0.91429 0.92536 0.91200 0.90256 0.90488 0.88724 0.93093 0.89462 0.85719 0.73629 0.83840 0.82121 0.85917 0.91769 0.85676 0.90001 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.20 71.98 0.66 -0.58 16 2 C -0.10 -1.33 2.86 -10.86 -0.03 -1.36 16 3 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.18 5.17 30.62 0.16 -1.02 16 5 C -0.13 -1.85 6.08 30.67 0.19 -1.66 16 6 C 0.06 1.07 6.02 86.36 0.52 1.59 16 7 N -0.57 -11.77 2.98 -821.43 -2.45 -14.21 16 8 C 0.51 13.48 7.74 87.24 0.68 14.16 16 9 O -0.54 -16.49 15.91 -3.28 -0.05 -16.54 16 10 C 0.51 14.62 7.60 87.24 0.66 15.28 16 11 O -0.50 -14.69 10.56 -3.31 -0.03 -14.73 16 12 N -0.63 -19.59 5.32 -304.89 -1.62 -21.21 16 13 C 0.17 6.39 6.29 38.20 0.24 6.63 16 14 C -0.19 -6.47 8.70 22.44 0.20 -6.28 16 15 C -0.05 -1.63 10.03 22.23 0.22 -1.41 16 16 C -0.20 -8.45 9.99 22.42 0.22 -8.22 16 17 C 0.13 6.52 6.65 22.56 0.15 6.67 16 18 O -0.22 -13.19 9.76 -22.79 -0.22 -13.41 16 19 C -0.41 -23.80 9.49 67.92 0.64 -23.15 16 20 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 21 C -0.02 -1.07 5.49 84.83 0.47 -0.61 16 22 N -0.92 -55.68 13.67 21.61 0.30 -55.39 16 23 Si 1.01 42.71 29.55 68.60 2.03 44.73 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 27 C -0.26 -11.12 9.08 22.52 0.20 -10.91 16 28 C 0.11 1.72 5.70 86.22 0.49 2.21 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.13 2.79 4.22 -55.73 -0.23 2.55 16 38 H 0.43 12.10 8.30 -92.71 -0.77 11.33 16 39 H 0.14 4.43 6.21 -2.91 -0.02 4.41 16 40 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 41 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 42 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.13 5.51 5.63 -2.91 -0.02 5.49 16 44 H 0.08 1.55 7.00 -2.39 -0.02 1.54 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.72 367.56 3.65 -67.07 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.04 Total: 32.36 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.67 Total: -8.67 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -3.77 Total: -90.81 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.31 Total: -44.68 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -70.72 3.65 -67.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080230367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.002 kcal (2) G-P(sol) polarization free energy of solvation -70.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds