Wall clock time and date at job start Tue Mar 31 2020 17:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.65009 * 2 1 4 4 C 1.53176 * 109.56061 * 120.27508 * 2 1 3 5 5 C 1.52962 * 109.08163 * 190.21577 * 4 2 1 6 6 C 1.52323 * 108.84605 * 309.17502 * 5 4 2 7 7 C 1.33386 * 123.39086 * 17.31308 * 6 5 4 8 8 S 1.75597 * 111.37338 * 179.97438 * 7 6 5 9 9 C 1.75519 * 92.47143 * 0.02562 * 8 7 6 10 10 N 1.34054 * 131.23845 * 180.24569 * 9 8 7 11 11 C 1.31259 * 120.95667 * 180.22573 * 10 9 8 12 12 C 1.50700 * 118.89819 * 179.71196 * 11 10 9 13 13 N 1.46501 * 109.47018 * 269.73491 * 12 11 10 14 14 C 1.46496 * 120.00077 * 90.00007 * 13 12 11 15 15 C 1.36944 * 119.99835 * 269.72441 * 13 12 11 16 16 H 1.08001 * 119.99910 * 335.82498 * 15 13 12 17 17 C 1.38814 * 119.99751 * 155.82832 * 15 13 12 18 18 N 1.31613 * 120.00307 * 350.35408 * 17 15 13 19 19 Si 1.86807 * 119.99798 * 170.36156 * 17 15 13 20 20 H 1.48493 * 109.47154 * 59.99485 * 19 17 15 21 21 H 1.48498 * 109.46925 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46592 * 299.99512 * 19 17 15 23 23 N 1.32115 * 122.20164 * 359.43851 * 11 10 9 24 24 C 1.32458 * 121.17192 * 0.29033 * 23 11 10 25 25 N 1.38316 * 120.57471 * 179.97438 * 24 23 11 26 26 C 1.39281 * 109.60689 * 359.96627 * 9 8 7 27 27 C 1.51878 * 124.33168 * 359.91456 * 7 6 5 28 28 H 1.09001 * 109.46782 * 299.72537 * 1 2 3 29 29 H 1.09000 * 109.47451 * 59.72601 * 1 2 3 30 30 H 1.08999 * 109.47341 * 179.73251 * 1 2 3 31 31 H 1.09003 * 109.53988 * 70.33765 * 4 2 1 32 32 H 1.09000 * 109.60131 * 310.13394 * 4 2 1 33 33 H 1.09001 * 109.58034 * 189.36893 * 5 4 2 34 34 H 1.08998 * 109.67924 * 69.04541 * 5 4 2 35 35 H 1.09002 * 109.47160 * 149.73710 * 12 11 10 36 36 H 1.08993 * 109.47104 * 29.73458 * 12 11 10 37 37 H 1.09006 * 109.47285 * 264.95245 * 14 13 12 38 38 H 1.08994 * 109.47003 * 24.95295 * 14 13 12 39 39 H 1.09003 * 109.46977 * 144.95328 * 14 13 12 40 40 H 0.96996 * 120.00364 * 180.02562 * 18 17 15 41 41 H 0.97008 * 119.99773 * 340.85413 * 25 24 23 42 42 H 0.96991 * 120.00520 * 160.85095 * 25 24 23 43 43 H 1.09009 * 109.59388 * 256.85072 * 27 7 6 44 44 H 1.09003 * 109.57102 * 136.45735 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8965 1.0265 0.0000 4 6 2.0428 -0.7277 1.2465 5 6 3.5508 -0.5037 1.3713 6 6 4.2106 -0.8441 0.0413 7 6 3.5398 -0.9400 -1.1076 8 16 4.6084 -1.3455 -2.4407 9 6 6.0190 -1.3869 -1.3970 10 7 7.3089 -1.6355 -1.6641 11 6 8.2114 -1.6174 -0.7112 12 6 9.6474 -1.9101 -1.0625 13 7 9.8970 -3.3484 -0.9387 14 6 9.6917 -4.2292 -2.0911 15 6 10.3275 -3.8685 0.2527 16 1 10.8479 -3.2397 0.9599 17 6 10.0952 -5.2041 0.5512 18 7 9.3019 -5.9216 -0.2157 19 14 10.9083 -5.9831 2.0418 20 1 10.4858 -5.2622 3.2693 21 1 10.5008 -7.4077 2.1399 22 1 12.3842 -5.8984 1.9011 23 7 7.9039 -1.3459 0.5447 24 6 6.6564 -1.0825 0.9035 25 7 6.3482 -0.8004 2.2221 26 6 5.6410 -1.0952 -0.0886 27 6 2.0423 -0.7270 -1.2456 28 1 -0.3633 0.5096 0.8925 29 1 -0.3634 0.5181 -0.8875 30 1 -0.3634 -1.0276 -0.0048 31 1 1.8392 -1.7946 1.1554 32 1 1.5416 -0.3351 2.1312 33 1 3.9523 -1.1480 2.1535 34 1 3.7476 0.5391 1.6203 35 1 10.3054 -1.3674 -0.3837 36 1 9.8423 -1.5944 -2.0873 37 1 8.6930 -4.6633 -2.0434 38 1 9.7942 -3.6538 -3.0111 39 1 10.4353 -5.0262 -2.0763 40 1 9.1393 -6.8547 -0.0069 41 1 6.9609 -1.0572 2.9290 42 1 5.5196 -0.3458 2.4399 43 1 1.5428 -1.6916 -1.3368 44 1 1.8393 -0.1234 -2.1302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093171480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:29 Heat of formation + Delta-G solvation = 74.962686 kcal Electronic energy + Delta-G solvation = -26282.450947 eV Core-core repulsion = 22747.030851 eV Total energy + Delta-G solvation = -3535.420096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.54312 -38.71662 -35.96726 -34.99378 -34.46734 -31.69450 -31.36096 -31.01503 -29.66507 -27.49357 -25.89524 -25.33652 -24.45536 -22.90330 -22.40966 -21.25715 -20.69038 -18.72241 -17.79432 -17.57515 -16.70213 -16.27236 -15.76477 -15.27463 -14.91149 -14.63745 -14.50400 -14.38142 -13.76728 -13.56569 -13.44555 -13.26488 -13.12241 -12.95870 -12.74921 -12.30551 -11.94105 -11.74347 -11.61918 -11.33873 -11.15289 -11.01620 -10.94297 -10.80548 -10.70989 -10.63615 -10.31643 -10.27656 -10.13871 -10.02007 -9.88194 -9.03292 -8.58814 -8.52876 -8.22891 -7.40522 -6.84128 -5.77107 -3.21311 0.98016 1.51188 1.74601 2.17517 2.41821 3.38074 3.42145 3.43683 3.64167 4.32410 4.39018 4.49770 4.52770 4.55966 4.77943 4.81698 4.85869 5.13825 5.19817 5.25599 5.32524 5.37606 5.42947 5.45175 5.48595 5.58334 5.59938 5.68966 5.72206 5.81913 5.83419 5.90178 6.13465 6.20373 6.40840 6.52108 6.56361 6.82082 6.86294 7.25358 7.39412 7.49003 7.78157 7.81974 7.94282 8.34451 8.96328 9.18414 9.77408 10.27363 11.26133 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.003463 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.405889 B = 8082.982783 C = 8665.483637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.067 4.067 6 C -0.052 4.052 7 C -0.198 4.198 8 S 0.127 5.873 9 C 0.132 3.868 10 N -0.527 5.527 11 C 0.372 3.628 12 C 0.207 3.793 13 N -0.574 5.574 14 C 0.163 3.837 15 C -0.246 4.246 16 H 0.075 0.925 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.910 3.090 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.281 1.281 23 N -0.559 5.559 24 C 0.481 3.519 25 N -0.843 5.843 26 C -0.251 4.251 27 C -0.036 4.036 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.006 0.994 39 H 0.047 0.953 40 H 0.254 0.746 41 H 0.407 0.593 42 H 0.405 0.595 43 H 0.078 0.922 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 13.349 1.509 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.107 4.107 6 C -0.065 4.065 7 C -0.314 4.314 8 S 0.388 5.612 9 C -0.121 4.121 10 N -0.249 5.249 11 C 0.098 3.902 12 C 0.077 3.923 13 N -0.294 5.294 14 C 0.019 3.981 15 C -0.377 4.377 16 H 0.093 0.907 17 C -0.196 4.196 18 N -0.544 5.544 19 Si 0.740 3.260 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.207 1.207 23 N -0.284 5.284 24 C 0.227 3.773 25 N -0.391 5.391 26 C -0.268 4.268 27 C -0.075 4.075 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.237 0.763 42 H 0.237 0.763 43 H 0.097 0.903 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.722 12.650 -0.407 20.184 hybrid contribution -0.493 -0.324 2.955 3.013 sum -16.215 12.326 2.548 20.527 Atomic orbital electron populations 1.21823 0.94675 1.02046 1.01828 1.21155 0.95459 0.99783 0.94375 0.90676 1.21615 0.94411 1.01288 0.97753 1.20715 0.95167 1.01371 0.93424 1.19948 0.90197 1.01197 0.95126 1.24150 0.99369 1.11958 0.95927 1.83876 0.94018 1.74724 1.08615 1.23344 0.97147 0.97648 0.93916 1.68093 0.98322 1.21389 1.37050 1.25057 0.99124 0.83932 0.82042 1.20064 0.84875 0.87654 0.99755 1.44306 1.73567 1.01399 1.10083 1.20878 1.00649 0.91863 0.84750 1.19308 1.28494 0.93874 0.95978 0.90723 1.25207 0.98035 0.98093 0.98269 1.70074 1.37154 1.08099 1.39032 0.86247 0.79158 0.78109 0.82514 1.20838 1.21646 1.20744 1.67839 1.16712 1.21978 1.21858 1.18466 0.87775 0.85941 0.85102 1.42302 1.26458 1.66374 1.03921 1.19906 0.93833 1.17515 0.95579 1.20363 0.87700 1.00993 0.98441 0.92459 0.92520 0.92473 0.91320 0.91196 0.90229 0.90443 0.90756 0.91284 0.95126 0.97584 0.93421 0.93537 0.76261 0.76266 0.90325 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.18 37.16 0.34 -0.57 16 2 C -0.09 -0.70 2.72 -90.50 -0.25 -0.95 16 3 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 4 C -0.11 -0.95 5.21 -26.66 -0.14 -1.09 16 5 C -0.07 -0.69 4.48 -27.10 -0.12 -0.81 16 6 C -0.05 -0.75 5.93 -102.49 -0.61 -1.35 16 7 C -0.20 -2.69 6.29 -35.42 -0.22 -2.91 16 8 S 0.13 2.02 23.18 -107.50 -2.49 -0.47 16 9 C 0.13 2.66 7.67 -16.19 -0.12 2.53 16 10 N -0.53 -11.90 10.37 -9.61 -0.10 -12.00 16 11 C 0.37 8.55 7.22 -157.38 -1.14 7.41 16 12 C 0.21 4.65 6.13 -5.19 -0.03 4.62 16 13 N -0.57 -15.04 2.90 -182.50 -0.53 -15.57 16 14 C 0.16 4.22 9.01 59.84 0.54 4.76 16 15 C -0.25 -6.88 9.66 -15.05 -0.15 -7.02 16 16 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 17 C 0.00 0.09 5.16 -17.43 -0.09 0.00 16 18 N -0.90 -26.86 10.62 55.49 0.59 -26.27 16 19 Si 0.91 22.15 29.57 -169.99 -5.03 17.12 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 N -0.56 -12.30 10.32 -9.57 -0.10 -12.40 16 24 C 0.48 9.07 7.88 -154.54 -1.22 7.85 16 25 N -0.84 -11.58 8.64 31.58 0.27 -11.31 16 26 C -0.25 -4.61 6.05 -105.06 -0.64 -5.24 16 27 C -0.04 -0.35 5.54 -27.27 -0.15 -0.50 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.08 0.80 6.66 -51.93 -0.35 0.45 16 34 H 0.08 0.66 7.98 -51.93 -0.41 0.25 16 35 H 0.07 1.58 8.03 -51.93 -0.42 1.16 16 36 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 37 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 38 H 0.01 0.13 7.84 -51.93 -0.41 -0.28 16 39 H 0.05 1.28 7.32 -51.93 -0.38 0.90 16 40 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.41 5.25 8.95 -40.82 -0.37 4.88 16 42 H 0.40 4.24 5.54 -40.82 -0.23 4.02 16 43 H 0.08 0.73 8.12 -51.92 -0.42 0.31 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -33.66 363.75 -12.16 -45.82 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.27 Total: 2.87 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.99 Total: 6.73 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: 0.13 Total: -77.55 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.49 Total: -0.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.66 -12.16 -45.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093171480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.781 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds