Wall clock time and date at job start Tue Mar 31 2020 17:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.65009 * 2 1 4 4 C 1.53176 * 109.56061 * 120.27508 * 2 1 3 5 5 C 1.52962 * 109.08163 * 190.21577 * 4 2 1 6 6 C 1.52323 * 108.84605 * 309.17502 * 5 4 2 7 7 C 1.33386 * 123.39086 * 17.31308 * 6 5 4 8 8 S 1.75597 * 111.37338 * 179.97438 * 7 6 5 9 9 C 1.75519 * 92.47143 * 0.02562 * 8 7 6 10 10 N 1.34054 * 131.23845 * 180.24569 * 9 8 7 11 11 C 1.31259 * 120.95667 * 180.22573 * 10 9 8 12 12 C 1.50700 * 118.89819 * 179.71196 * 11 10 9 13 13 N 1.46501 * 109.47018 * 269.73491 * 12 11 10 14 14 C 1.46496 * 120.00077 * 90.00007 * 13 12 11 15 15 C 1.36944 * 119.99835 * 269.72441 * 13 12 11 16 16 H 1.08001 * 119.99910 * 335.82498 * 15 13 12 17 17 C 1.38814 * 119.99751 * 155.82832 * 15 13 12 18 18 N 1.31613 * 120.00307 * 350.35408 * 17 15 13 19 19 Si 1.86807 * 119.99798 * 170.36156 * 17 15 13 20 20 H 1.48493 * 109.47154 * 59.99485 * 19 17 15 21 21 H 1.48498 * 109.46925 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46592 * 299.99512 * 19 17 15 23 23 N 1.32115 * 122.20164 * 359.43851 * 11 10 9 24 24 C 1.32458 * 121.17192 * 0.29033 * 23 11 10 25 25 N 1.38316 * 120.57471 * 179.97438 * 24 23 11 26 26 C 1.39281 * 109.60689 * 359.96627 * 9 8 7 27 27 C 1.51878 * 124.33168 * 359.91456 * 7 6 5 28 28 H 1.09001 * 109.46782 * 299.72537 * 1 2 3 29 29 H 1.09000 * 109.47451 * 59.72601 * 1 2 3 30 30 H 1.08999 * 109.47341 * 179.73251 * 1 2 3 31 31 H 1.09003 * 109.53988 * 70.33765 * 4 2 1 32 32 H 1.09000 * 109.60131 * 310.13394 * 4 2 1 33 33 H 1.09001 * 109.58034 * 189.36893 * 5 4 2 34 34 H 1.08998 * 109.67924 * 69.04541 * 5 4 2 35 35 H 1.09002 * 109.47160 * 149.73710 * 12 11 10 36 36 H 1.08993 * 109.47104 * 29.73458 * 12 11 10 37 37 H 1.09006 * 109.47285 * 264.95245 * 14 13 12 38 38 H 1.08994 * 109.47003 * 24.95295 * 14 13 12 39 39 H 1.09003 * 109.46977 * 144.95328 * 14 13 12 40 40 H 0.96996 * 120.00364 * 180.02562 * 18 17 15 41 41 H 0.97008 * 119.99773 * 340.85413 * 25 24 23 42 42 H 0.96991 * 120.00520 * 160.85095 * 25 24 23 43 43 H 1.09009 * 109.59388 * 256.85072 * 27 7 6 44 44 H 1.09003 * 109.57102 * 136.45735 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8965 1.0265 0.0000 4 6 2.0428 -0.7277 1.2465 5 6 3.5508 -0.5037 1.3713 6 6 4.2106 -0.8441 0.0413 7 6 3.5398 -0.9400 -1.1076 8 16 4.6084 -1.3455 -2.4407 9 6 6.0190 -1.3869 -1.3970 10 7 7.3089 -1.6355 -1.6641 11 6 8.2114 -1.6174 -0.7112 12 6 9.6474 -1.9101 -1.0625 13 7 9.8970 -3.3484 -0.9387 14 6 9.6917 -4.2292 -2.0911 15 6 10.3275 -3.8685 0.2527 16 1 10.8479 -3.2397 0.9599 17 6 10.0952 -5.2041 0.5512 18 7 9.3019 -5.9216 -0.2157 19 14 10.9083 -5.9831 2.0418 20 1 10.4858 -5.2622 3.2693 21 1 10.5008 -7.4077 2.1399 22 1 12.3842 -5.8984 1.9011 23 7 7.9039 -1.3459 0.5447 24 6 6.6564 -1.0825 0.9035 25 7 6.3482 -0.8004 2.2221 26 6 5.6410 -1.0952 -0.0886 27 6 2.0423 -0.7270 -1.2456 28 1 -0.3633 0.5096 0.8925 29 1 -0.3634 0.5181 -0.8875 30 1 -0.3634 -1.0276 -0.0048 31 1 1.8392 -1.7946 1.1554 32 1 1.5416 -0.3351 2.1312 33 1 3.9523 -1.1480 2.1535 34 1 3.7476 0.5391 1.6203 35 1 10.3054 -1.3674 -0.3837 36 1 9.8423 -1.5944 -2.0873 37 1 8.6930 -4.6633 -2.0434 38 1 9.7942 -3.6538 -3.0111 39 1 10.4353 -5.0262 -2.0763 40 1 9.1393 -6.8547 -0.0069 41 1 6.9609 -1.0572 2.9290 42 1 5.5196 -0.3458 2.4399 43 1 1.5428 -1.6916 -1.3368 44 1 1.8393 -0.1234 -2.1302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093171480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:28 Heat of formation + Delta-G solvation = 54.419727 kcal Electronic energy + Delta-G solvation = -26283.341757 eV Core-core repulsion = 22747.030851 eV Total energy + Delta-G solvation = -3536.310906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98936 -39.69718 -37.68853 -36.50352 -35.69751 -33.45148 -32.81514 -32.00136 -30.95258 -28.94875 -27.93006 -26.56693 -25.68897 -24.22203 -23.81260 -22.63075 -21.94696 -19.72282 -19.22994 -18.99344 -18.63139 -17.57926 -16.97676 -16.87256 -16.44561 -16.03186 -15.60802 -15.41582 -15.25456 -15.10814 -14.96025 -14.59256 -14.12324 -14.05263 -13.85572 -13.56728 -13.14570 -13.02506 -12.92379 -12.82567 -12.63029 -12.51794 -12.39776 -12.31817 -12.12108 -11.99545 -11.96350 -11.74592 -11.50154 -11.31081 -11.18420 -10.69081 -10.38287 -10.10103 -9.54842 -8.93812 -8.70234 -7.87209 -5.38264 -0.42556 0.17009 0.24339 0.93732 1.13871 1.43588 1.47348 1.53615 2.33596 2.46822 2.79582 3.18473 3.36887 3.38649 3.60801 3.75786 3.79958 3.83948 3.92058 4.00798 4.23306 4.29691 4.47371 4.54716 4.63194 4.69574 4.78244 4.79862 4.83903 4.85932 4.88221 5.00767 5.08339 5.18914 5.24434 5.25561 5.28784 5.44286 5.48412 5.56210 5.60832 5.65732 5.88945 6.14084 6.26071 6.69292 7.07519 7.40365 7.74444 8.21113 9.15743 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.003463 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.405889 B = 8082.982783 C = 8665.483637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.066 4.066 6 C -0.067 4.067 7 C -0.181 4.181 8 S 0.139 5.861 9 C 0.083 3.917 10 N -0.551 5.551 11 C 0.355 3.645 12 C 0.210 3.790 13 N -0.593 5.593 14 C 0.184 3.816 15 C -0.254 4.254 16 H 0.077 0.923 17 C -0.053 4.053 18 N -0.939 5.939 19 Si 0.976 3.024 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.271 1.271 23 N -0.585 5.585 24 C 0.470 3.530 25 N -0.817 5.817 26 C -0.247 4.247 27 C -0.038 4.038 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.084 0.916 37 H -0.007 1.007 38 H 0.031 0.969 39 H 0.027 0.973 40 H 0.247 0.753 41 H 0.413 0.587 42 H 0.422 0.578 43 H 0.087 0.913 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.284 15.322 3.123 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.105 4.105 6 C -0.079 4.079 7 C -0.297 4.297 8 S 0.400 5.600 9 C -0.166 4.166 10 N -0.273 5.273 11 C 0.080 3.920 12 C 0.081 3.919 13 N -0.314 5.314 14 C 0.039 3.961 15 C -0.384 4.384 16 H 0.095 0.905 17 C -0.248 4.248 18 N -0.585 5.585 19 Si 0.803 3.197 20 H -0.202 1.202 21 H -0.222 1.222 22 H -0.196 1.196 23 N -0.312 5.312 24 C 0.215 3.785 25 N -0.367 5.367 26 C -0.266 4.266 27 C -0.077 4.077 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.011 0.989 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.245 0.755 42 H 0.258 0.742 43 H 0.106 0.894 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.595 14.695 1.236 23.733 hybrid contribution 0.135 -0.696 2.393 2.496 sum -18.460 13.999 3.629 23.450 Atomic orbital electron populations 1.21791 0.93009 1.02408 1.02778 1.21160 0.96699 0.99499 0.92958 0.90268 1.21644 0.92976 1.01059 0.99140 1.20860 0.96217 1.02631 0.90797 1.20317 0.88276 1.01773 0.97554 1.24771 1.00955 1.09503 0.94514 1.83777 0.92796 1.74009 1.09389 1.23958 0.97395 0.99062 0.96232 1.68013 0.99643 1.22206 1.37483 1.24738 0.99024 0.85446 0.82797 1.20026 0.85344 0.85733 1.00831 1.44286 1.75061 1.02453 1.09558 1.20527 0.97708 0.91725 0.86117 1.19549 1.28499 0.94211 0.96175 0.90549 1.25974 0.99013 0.98664 1.01160 1.70275 1.39381 1.07818 1.41051 0.85222 0.78578 0.76649 0.79268 1.20196 1.22200 1.19647 1.67772 1.18564 1.23364 1.21525 1.18743 0.87249 0.85641 0.86910 1.42226 1.27172 1.65183 1.02114 1.20368 0.95820 1.15628 0.94735 1.20615 0.84579 1.02146 1.00363 0.91265 0.91925 0.92416 0.92155 0.88521 0.90042 0.88252 0.89996 0.89811 0.98902 0.95016 0.95432 0.94389 0.75506 0.74178 0.89432 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.18 71.98 0.66 -0.51 16 2 C -0.08 -0.98 2.72 -10.72 -0.03 -1.01 16 3 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 4 C -0.11 -1.39 5.21 30.64 0.16 -1.23 16 5 C -0.07 -1.10 4.48 30.36 0.14 -0.97 16 6 C -0.07 -1.79 5.93 -18.48 -0.11 -1.90 16 7 C -0.18 -4.52 6.29 24.96 0.16 -4.36 16 8 S 0.14 4.34 23.18 -56.49 -1.31 3.03 16 9 C 0.08 3.39 7.67 84.60 0.65 4.04 16 10 N -0.55 -25.67 10.37 -184.32 -1.91 -27.58 16 11 C 0.35 16.76 7.22 138.81 1.00 17.77 16 12 C 0.21 9.70 6.13 85.63 0.52 10.22 16 13 N -0.59 -32.06 2.90 -731.31 -2.12 -34.18 16 14 C 0.18 9.97 9.01 127.77 1.15 11.13 16 15 C -0.25 -14.56 9.66 84.03 0.81 -13.75 16 16 H 0.08 4.23 7.84 -2.91 -0.02 4.21 16 17 C -0.05 -3.10 5.16 84.86 0.44 -2.66 16 18 N -0.94 -58.43 10.62 21.65 0.23 -58.20 16 19 Si 0.98 46.56 29.57 68.60 2.03 48.59 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 N -0.59 -26.16 10.32 -184.19 -1.90 -28.06 16 24 C 0.47 17.49 7.88 133.99 1.06 18.55 16 25 N -0.82 -21.06 8.64 -54.00 -0.47 -21.52 16 26 C -0.25 -8.94 6.05 -20.15 -0.12 -9.06 16 27 C -0.04 -0.61 5.54 30.24 0.17 -0.44 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 32 H 0.10 0.76 8.12 -2.39 -0.02 0.74 16 33 H 0.08 1.35 6.66 -2.39 -0.02 1.34 16 34 H 0.10 1.26 7.98 -2.39 -0.02 1.24 16 35 H 0.08 3.56 8.03 -2.39 -0.02 3.54 16 36 H 0.08 3.51 7.86 -2.39 -0.02 3.49 16 37 H -0.01 -0.46 7.34 -2.38 -0.02 -0.47 16 38 H 0.03 1.49 7.84 -2.39 -0.02 1.48 16 39 H 0.03 1.54 7.32 -2.39 -0.02 1.53 16 40 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.41 9.98 8.95 -92.70 -0.83 9.15 16 42 H 0.42 7.68 5.54 -92.72 -0.51 7.16 16 43 H 0.09 1.33 8.12 -2.38 -0.02 1.31 16 44 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -76.94 363.75 0.90 -76.04 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -0.30 Total: 16.08 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 6.65 Total: 25.81 kcal Atomic # 7 Polarization: -163.37 SS G_CDS: -6.17 Total: -169.55 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.31 Total: 3.03 kcal Total: -76.94 0.90 -76.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093171480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.458 kcal (2) G-P(sol) polarization free energy of solvation -76.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds