Wall clock time and date at job start Tue Mar 31 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.50704 * 109.46688 * 119.99412 * 2 1 3 5 5 H 1.08004 * 119.99469 * 120.00585 * 4 2 1 6 6 C 1.37875 * 120.00454 * 299.99903 * 4 2 1 7 7 N 1.31518 * 120.00130 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99922 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47262 * 89.99696 * 8 6 4 10 10 H 1.48495 * 109.47052 * 209.99919 * 8 6 4 11 11 H 1.48507 * 109.46733 * 329.99879 * 8 6 4 12 12 N 1.46496 * 109.47324 * 239.99433 * 2 1 3 13 13 C 1.46497 * 120.00290 * 300.00249 * 12 2 1 14 14 C 1.34780 * 120.00058 * 120.00162 * 12 2 1 15 15 O 1.21277 * 119.99652 * 359.97438 * 14 12 2 16 16 C 1.50694 * 119.99969 * 180.02562 * 14 12 2 17 17 N 1.46506 * 109.46953 * 179.97438 * 16 14 12 18 18 C 1.40219 * 120.50545 * 90.00129 * 17 16 14 19 19 C 1.38505 * 120.73405 * 15.48398 * 18 17 16 20 20 C 1.38285 * 119.80762 * 180.02562 * 19 18 17 21 21 C 1.38281 * 120.20277 * 359.97438 * 20 19 18 22 22 C 1.38315 * 120.25730 * 359.97438 * 21 20 19 23 23 C 1.38390 * 119.87554 * 359.97438 * 22 21 20 24 24 O 1.35985 * 120.67380 * 180.12968 * 23 22 21 25 25 C 1.42997 * 116.71878 * 147.16331 * 24 23 22 26 26 H 1.09000 * 109.41537 * 286.36285 * 25 24 23 27 27 C 1.53001 * 109.44341 * 166.44710 * 25 24 23 28 28 C 1.35086 * 120.51444 * 269.98266 * 17 16 14 29 29 O 1.21294 * 120.13484 * 1.65991 * 28 17 16 30 30 H 1.09005 * 109.46768 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46870 * 300.00418 * 1 2 3 32 32 H 1.08996 * 109.46670 * 60.00713 * 1 2 3 33 33 H 0.96991 * 119.99494 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47225 * 270.00031 * 13 12 2 35 35 H 1.09001 * 109.47039 * 29.99440 * 13 12 2 36 36 H 1.08998 * 109.47664 * 149.99723 * 13 12 2 37 37 H 1.08997 * 109.47096 * 60.00119 * 16 14 12 38 38 H 1.08995 * 109.47391 * 299.99930 * 16 14 12 39 39 H 1.08000 * 120.09724 * 0.05272 * 19 18 17 40 40 H 1.08003 * 119.89641 * 179.97438 * 20 19 18 41 41 H 1.07998 * 119.86937 * 180.27010 * 21 20 19 42 42 H 1.08005 * 120.06015 * 180.02562 * 22 21 20 43 43 H 1.08994 * 109.47188 * 299.82987 * 27 25 24 44 44 H 1.09005 * 109.47267 * 59.83551 * 27 25 24 45 45 H 1.09001 * 109.47220 * 179.83222 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5567 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9759 1.9953 3.9067 11 1 0.8472 2.1766 1.4919 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0833 15 8 3.0859 1.1255 -1.8916 16 6 3.2952 -0.7461 -3.3139 17 7 4.1088 0.1748 -4.1116 18 6 5.4907 0.2735 -3.8956 19 6 6.1649 -0.6957 -3.1714 20 6 7.5279 -0.5789 -2.9694 21 6 8.2181 0.5011 -3.4884 22 6 7.5505 1.4716 -4.2134 23 6 6.1867 1.3612 -4.4206 24 8 5.5146 2.3045 -5.1331 25 6 4.3991 1.8531 -5.9056 26 1 4.7594 1.3113 -6.7801 27 6 3.5721 3.0581 -6.3582 28 6 3.5393 0.9416 -5.0669 29 8 2.3413 0.8949 -5.2513 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 1.9039 -0.5271 4.4376 34 1 2.4158 -2.7378 -0.9714 35 1 0.6906 -2.3003 -0.9844 36 1 1.6239 -2.2854 -2.5000 37 1 2.4473 -1.0883 -3.9071 38 1 3.9006 -1.6027 -3.0175 39 1 5.6278 -1.5403 -2.7659 40 1 8.0550 -1.3336 -2.4045 41 1 9.2833 0.5847 -3.3312 42 1 8.0928 2.3136 -4.6177 43 1 3.2105 3.5996 -5.4841 44 1 4.1932 3.7185 -6.9635 45 1 2.7232 2.7148 -6.9496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:53 Heat of formation + Delta-G solvation = -48.018566 kcal Electronic energy + Delta-G solvation = -29641.446248 eV Core-core repulsion = 25625.647662 eV Total energy + Delta-G solvation = -4015.798586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74184 -39.39687 -38.85827 -37.68933 -35.93039 -35.25140 -32.86308 -32.26766 -30.89635 -30.36823 -29.54918 -28.01220 -26.32702 -25.14338 -24.32698 -23.44743 -22.74227 -21.23723 -19.52932 -19.36126 -18.54747 -17.47241 -17.19992 -16.95835 -16.42164 -15.74234 -15.56256 -15.42141 -15.09311 -14.79624 -14.56071 -14.51435 -14.05774 -13.88852 -13.34469 -13.11773 -13.02873 -12.86046 -12.56111 -12.43110 -12.35042 -12.25203 -12.05051 -11.97326 -11.83348 -11.63865 -11.31247 -11.28412 -11.12918 -10.75820 -10.71011 -10.15860 -9.99136 -9.67231 -9.39373 -9.16970 -8.75800 -8.65890 -7.89004 -7.80068 -6.17360 -4.18043 0.99647 1.16863 2.18327 2.34708 3.10906 3.12853 3.22161 3.35824 3.39370 3.55106 3.77521 3.85496 4.33496 4.49631 4.56037 4.65065 4.83538 4.89903 4.94667 5.05261 5.13421 5.16915 5.22351 5.31499 5.44874 5.46866 5.55364 5.59730 5.84535 5.90732 5.91956 6.05319 6.13998 6.20897 6.23058 6.31215 6.35664 6.45345 6.53140 6.79146 6.82094 7.06336 7.23989 7.28070 7.59262 7.64541 8.09570 8.42420 8.76693 8.84174 9.43823 10.95255 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003909 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.404744 B = 7161.139980 C = 7944.222284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.230 3.770 3 H 0.061 0.939 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.584 5.584 13 C 0.083 3.917 14 C 0.492 3.508 15 O -0.537 6.537 16 C 0.089 3.911 17 N -0.531 5.531 18 C 0.109 3.891 19 C -0.123 4.123 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.110 4.110 23 C 0.081 3.919 24 O -0.300 6.300 25 C 0.083 3.917 26 H 0.101 0.899 27 C -0.135 4.135 28 C 0.495 3.505 29 O -0.503 6.503 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.770 -0.821 -20.085 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.129 3.871 3 H 0.079 0.921 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.316 5.316 13 C -0.061 4.061 14 C 0.277 3.723 15 O -0.415 6.415 16 C -0.036 4.036 17 N -0.255 5.255 18 C 0.015 3.985 19 C -0.144 4.144 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.129 4.129 23 C 0.035 3.965 24 O -0.215 6.215 25 C 0.024 3.976 26 H 0.119 0.881 27 C -0.192 4.192 28 C 0.283 3.717 29 O -0.377 6.377 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.179 -0.038 -19.902 21.517 hybrid contribution -0.820 0.335 0.594 1.067 sum 7.359 0.297 -19.308 20.665 Atomic orbital electron populations 1.22457 0.99023 1.01096 0.99359 1.19305 0.90018 0.95173 0.82647 0.92081 1.21123 1.32767 1.14217 0.88401 0.90330 1.24844 0.95630 0.96517 0.95619 1.69867 1.45168 1.40170 0.97966 0.86934 0.80475 0.83901 0.77515 1.20333 1.22065 1.18896 1.47847 1.49026 1.11896 1.22851 1.21660 1.02384 0.82643 0.99397 1.20554 0.79724 0.87588 0.84411 1.90683 1.57698 1.16776 1.76316 1.21642 0.97038 0.92327 0.92638 1.45210 1.05796 1.40515 1.33972 1.18080 0.82516 0.96702 1.01243 1.20718 0.94950 0.98383 1.00301 1.20983 0.93242 0.98663 0.99736 1.20961 1.00180 0.94036 0.98190 1.20485 0.90106 1.00635 1.01677 1.18571 0.91733 0.88665 0.97567 1.86224 1.42499 1.32912 1.59911 1.22605 0.85491 0.96814 0.92687 0.88108 1.21716 0.99173 0.95425 1.02912 1.21483 0.89330 0.80171 0.80706 1.90736 1.14216 1.64761 1.67988 0.92452 0.93092 0.94760 0.92409 0.92470 0.90384 0.92807 0.86443 0.86886 0.84959 0.84999 0.84980 0.84524 0.90794 0.90268 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.65 37.16 0.32 -3.25 16 2 C 0.23 5.67 2.23 -69.08 -0.15 5.51 16 3 H 0.06 1.70 5.96 -51.93 -0.31 1.39 16 4 C -0.53 -14.57 8.95 -34.44 -0.31 -14.87 16 5 H 0.08 2.31 7.89 -52.48 -0.41 1.89 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 8 Si 0.88 22.19 24.37 -169.99 -4.14 18.05 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 10 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.26 -6.67 6.53 56.52 0.37 -6.31 16 12 N -0.58 -12.11 2.75 -175.27 -0.48 -12.59 16 13 C 0.08 1.30 9.48 59.85 0.57 1.87 16 14 C 0.49 10.17 7.74 -10.99 -0.09 10.08 16 15 O -0.54 -13.51 15.76 5.56 0.09 -13.42 16 16 C 0.09 1.35 4.23 -5.19 -0.02 1.33 16 17 N -0.53 -8.37 2.21 -114.48 -0.25 -8.62 16 18 C 0.11 1.59 6.39 -83.49 -0.53 1.06 16 19 C -0.12 -1.56 9.36 -39.47 -0.37 -1.93 16 20 C -0.11 -1.14 10.04 -39.55 -0.40 -1.54 16 21 C -0.11 -1.13 10.04 -39.54 -0.40 -1.52 16 22 C -0.11 -1.22 10.00 -39.50 -0.39 -1.62 16 23 C 0.08 1.12 6.44 -39.09 -0.25 0.87 16 24 O -0.30 -4.17 10.09 -19.69 -0.20 -4.37 16 25 C 0.08 1.03 3.69 -27.84 -0.10 0.92 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 27 C -0.13 -1.43 9.14 37.16 0.34 -1.09 16 28 C 0.50 7.81 7.37 -10.80 -0.08 7.74 16 29 O -0.50 -9.00 15.83 5.54 0.09 -8.91 16 30 H 0.06 1.16 6.66 -51.93 -0.35 0.81 16 31 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 36 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 37 H 0.12 1.62 6.75 -51.93 -0.35 1.26 16 38 H 0.11 1.36 5.93 -51.93 -0.31 1.06 16 39 H 0.13 1.51 6.12 -52.49 -0.32 1.19 16 40 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.88 7.86 -51.93 -0.41 0.48 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -36.51 361.18 -6.51 -43.02 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.86 Total: 1.83 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.96 Total: 5.67 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.04 Total: -47.31 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.02 Total: -26.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.51 -6.51 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.997 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds