Wall clock time and date at job start Tue Mar 31 2020 17:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46989 * 2 1 4 4 C 1.50693 * 109.46902 * 120.00671 * 2 1 3 5 5 H 1.08001 * 120.00261 * 120.00551 * 4 2 1 6 6 C 1.37874 * 120.00017 * 299.99690 * 4 2 1 7 7 N 1.31515 * 120.00071 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99949 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47357 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47314 * 120.00425 * 8 6 4 11 11 H 1.48506 * 109.47078 * 239.99871 * 8 6 4 12 12 N 1.46498 * 109.46712 * 240.00524 * 2 1 3 13 13 C 1.46497 * 120.00246 * 299.99597 * 12 2 1 14 14 C 1.34779 * 120.00029 * 120.00157 * 12 2 1 15 15 O 1.21284 * 119.99584 * 359.97438 * 14 12 2 16 16 C 1.50702 * 120.00087 * 179.97438 * 14 12 2 17 17 N 1.46498 * 109.46696 * 180.02562 * 16 14 12 18 18 C 1.40217 * 120.50966 * 269.97494 * 17 16 14 19 19 C 1.38511 * 120.73803 * 15.48992 * 18 17 16 20 20 C 1.38285 * 119.81282 * 180.02562 * 19 18 17 21 21 C 1.38274 * 120.20441 * 0.02562 * 20 19 18 22 22 C 1.38325 * 120.25414 * 359.97438 * 21 20 19 23 23 C 1.38392 * 119.87513 * 359.97438 * 22 21 20 24 24 O 1.35986 * 120.66208 * 180.11511 * 23 22 21 25 25 C 1.43308 * 116.58234 * 146.94108 * 24 23 22 26 26 H 1.09003 * 109.39306 * 166.68740 * 25 24 23 27 27 C 1.52998 * 109.66614 * 286.69103 * 25 24 23 28 28 C 1.35092 * 120.51034 * 90.00622 * 17 16 14 29 29 O 1.21293 * 120.13037 * 1.65079 * 28 17 16 30 30 H 1.09004 * 109.46785 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47072 * 299.99422 * 1 2 3 32 32 H 1.08997 * 109.47405 * 59.99648 * 1 2 3 33 33 H 0.96999 * 119.99702 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.47471 * 270.00222 * 13 12 2 35 35 H 1.08999 * 109.47371 * 30.00544 * 13 12 2 36 36 H 1.09000 * 109.47225 * 150.00489 * 13 12 2 37 37 H 1.09002 * 109.46974 * 60.00298 * 16 14 12 38 38 H 1.08990 * 109.47024 * 300.00020 * 16 14 12 39 39 H 1.07999 * 120.08924 * 0.04044 * 19 18 17 40 40 H 1.08004 * 119.89982 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.87710 * 179.97438 * 21 20 19 42 42 H 1.07999 * 120.05701 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47291 * 180.09508 * 27 25 24 44 44 H 1.09001 * 109.46910 * 300.10075 * 27 25 24 45 45 H 1.08996 * 109.47026 * 60.09514 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4826 7 7 0.9428 0.8294 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.1472 -2.2867 3.6036 10 1 3.1472 -0.1863 4.8161 11 1 1.1677 -1.5870 4.8163 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0930 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.0858 1.1258 -1.8915 16 6 3.2959 -0.7459 -3.3137 17 7 4.1101 0.1748 -4.1107 18 6 3.5198 0.9707 -5.1028 19 6 2.1468 1.1490 -5.1434 20 6 1.5848 1.9376 -6.1306 21 6 2.3890 2.5471 -7.0760 22 6 3.7608 2.3729 -7.0407 23 6 4.3307 1.5860 -6.0552 24 8 5.6776 1.4057 -6.0040 25 6 6.2555 1.2558 -4.7013 26 1 7.2769 0.8877 -4.7986 27 6 6.2683 2.6077 -3.9850 28 6 5.4414 0.2697 -3.9017 29 8 5.9786 -0.4309 -3.0700 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 0.7088 1.1609 3.4845 34 1 2.4158 -2.7377 -0.9719 35 1 0.6904 -2.3002 -0.9849 36 1 1.6238 -2.2850 -2.5004 37 1 2.4482 -1.0887 -3.9071 38 1 3.9015 -1.6021 -3.0168 39 1 1.5171 0.6736 -4.4060 40 1 0.5144 2.0779 -6.1633 41 1 1.9445 3.1615 -7.8449 42 1 4.3859 2.8501 -7.7809 43 1 6.7099 2.4904 -2.9954 44 1 6.8567 3.3198 -4.5635 45 1 5.2472 2.9760 -3.8858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:57 Heat of formation + Delta-G solvation = -59.489463 kcal Electronic energy + Delta-G solvation = -29708.269184 eV Core-core repulsion = 25691.973182 eV Total energy + Delta-G solvation = -4016.296001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.76353 -39.31496 -38.75696 -37.64539 -35.79480 -35.11732 -32.94054 -32.07979 -30.44600 -30.35164 -29.27083 -27.72343 -26.19277 -25.24157 -24.37619 -23.60415 -22.66515 -21.14436 -19.33211 -19.28246 -18.51619 -17.35246 -16.99125 -16.50097 -16.04896 -15.87570 -15.55498 -15.41111 -14.97843 -14.94000 -14.48017 -14.28555 -14.09881 -13.93136 -13.31816 -13.08722 -12.80798 -12.67224 -12.62255 -12.54294 -12.19031 -12.11548 -11.85940 -11.59933 -11.56717 -11.32406 -11.24246 -11.09520 -10.83374 -10.79017 -10.67070 -10.27029 -10.20166 -9.92882 -9.22936 -9.09358 -8.75127 -8.45992 -7.88308 -7.67675 -6.09908 -4.17679 1.00934 1.15610 2.18578 2.53761 3.10440 3.19845 3.24946 3.33318 3.37287 3.62962 3.82440 3.93053 4.38295 4.52745 4.65526 4.72595 4.86145 4.97397 5.03163 5.07246 5.15746 5.21955 5.26328 5.36137 5.45603 5.53598 5.58600 5.60820 5.88252 5.95225 5.98030 6.05675 6.22874 6.25037 6.35366 6.51290 6.69990 6.74954 6.82566 6.99197 7.25216 7.34231 7.44926 7.67898 7.71698 7.97343 8.14861 8.43223 8.77854 8.94560 9.48960 10.95462 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.003575 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.134234 B = 7830.434033 C = 8571.422313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.589 5.589 13 C 0.082 3.918 14 C 0.489 3.511 15 O -0.539 6.539 16 C 0.087 3.913 17 N -0.530 5.530 18 C 0.112 3.888 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.110 4.110 23 C 0.075 3.925 24 O -0.302 6.302 25 C 0.083 3.917 26 H 0.149 0.851 27 C -0.175 4.175 28 C 0.498 3.502 29 O -0.502 6.502 30 H 0.031 0.969 31 H 0.094 0.906 32 H 0.011 0.989 33 H 0.263 0.737 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 0.271 -20.264 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.321 5.321 13 C -0.061 4.061 14 C 0.273 3.727 15 O -0.417 6.417 16 C -0.038 4.038 17 N -0.254 5.254 18 C 0.017 3.983 19 C -0.138 4.138 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.129 4.129 23 C 0.029 3.971 24 O -0.217 6.217 25 C 0.024 3.976 26 H 0.166 0.834 27 C -0.233 4.233 28 C 0.286 3.714 29 O -0.376 6.376 30 H 0.050 0.950 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.499 0.536 -19.607 19.924 hybrid contribution 0.081 -0.667 1.333 1.493 sum 3.580 -0.130 -18.274 18.622 Atomic orbital electron populations 1.22092 0.98084 0.99389 1.00884 1.18964 0.90862 0.94482 0.79824 0.91959 1.21350 1.31740 1.13026 0.90245 0.92204 1.24887 0.94912 0.94972 0.98992 1.69885 1.36442 1.22645 1.23673 0.86434 0.78612 0.79647 0.82693 1.19771 1.20891 1.20897 1.48244 1.48710 1.11674 1.23471 1.21624 1.02132 0.83210 0.99179 1.20554 0.79832 0.87596 0.84710 1.90670 1.57742 1.16809 1.76495 1.21663 0.96637 0.92960 0.92528 1.45245 1.07427 1.39126 1.33553 1.18108 0.93348 0.96198 0.90622 1.20720 0.92105 1.00978 0.99956 1.20983 1.00299 0.97000 0.94434 1.20948 0.92470 1.00602 0.99611 1.20482 0.95252 0.97936 0.99257 1.18544 0.82272 0.99172 0.97104 1.86329 1.18267 1.88881 1.28262 1.22938 0.97698 0.95695 0.81292 0.83393 1.22301 1.04557 0.94690 1.01705 1.21435 0.81971 0.84220 0.83742 1.90775 1.70361 1.42898 1.33530 0.95030 0.88720 0.97015 0.92734 0.92903 0.90421 0.93119 0.87262 0.86456 0.85233 0.85161 0.85090 0.84594 0.89764 0.89893 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.95 37.16 0.33 -3.08 16 2 C 0.26 6.58 2.64 -69.08 -0.18 6.40 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.52 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 N -0.59 -12.40 2.75 -175.26 -0.48 -12.88 16 13 C 0.08 1.33 9.48 59.85 0.57 1.90 16 14 C 0.49 10.11 7.30 -10.98 -0.08 10.03 16 15 O -0.54 -13.33 15.76 5.55 0.09 -13.24 16 16 C 0.09 1.38 3.81 -5.19 -0.02 1.36 16 17 N -0.53 -8.55 2.21 -114.47 -0.25 -8.81 16 18 C 0.11 1.61 6.38 -83.49 -0.53 1.08 16 19 C -0.12 -1.53 9.13 -39.46 -0.36 -1.89 16 20 C -0.11 -1.13 10.04 -39.55 -0.40 -1.53 16 21 C -0.12 -1.08 10.04 -39.54 -0.40 -1.48 16 22 C -0.11 -1.14 10.00 -39.49 -0.39 -1.53 16 23 C 0.08 0.97 5.85 -39.10 -0.23 0.75 16 24 O -0.30 -3.84 10.21 -19.70 -0.20 -4.05 16 25 C 0.08 1.07 3.81 -27.83 -0.11 0.96 16 26 H 0.15 1.52 8.14 -51.93 -0.42 1.10 16 27 C -0.17 -2.15 9.31 37.16 0.35 -1.80 16 28 C 0.50 8.31 6.92 -10.79 -0.07 8.24 16 29 O -0.50 -9.82 16.74 5.55 0.09 -9.73 16 30 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 36 H 0.05 0.61 6.44 -51.93 -0.33 0.27 16 37 H 0.11 1.34 6.32 -51.93 -0.33 1.01 16 38 H 0.12 1.81 7.41 -51.93 -0.38 1.43 16 39 H 0.13 1.75 6.48 -52.49 -0.34 1.41 16 40 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.03 7.81 -51.93 -0.41 0.63 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -34.26 368.53 -7.57 -41.83 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.06 Total: 3.11 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.91 Total: 6.47 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.11 Total: -46.24 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.02 Total: -27.01 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.26 -7.57 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.657 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds