Wall clock time and date at job start Tue Mar 31 2020 18:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47100 * 119.99885 * 2 1 3 5 5 H 1.07998 * 120.00006 * 119.99473 * 4 2 1 6 6 C 1.37883 * 119.99912 * 300.00009 * 4 2 1 7 7 N 1.31514 * 119.99963 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00054 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47074 * 90.00241 * 8 6 4 10 10 H 1.48492 * 109.47239 * 210.00244 * 8 6 4 11 11 H 1.48502 * 109.47258 * 330.00346 * 8 6 4 12 12 N 1.46494 * 109.46843 * 239.99652 * 2 1 3 13 13 C 1.34775 * 120.00286 * 85.00404 * 12 2 1 14 14 O 1.21637 * 119.99859 * 5.11160 * 13 12 2 15 15 C 1.47178 * 120.00503 * 185.11539 * 13 12 2 16 16 C 1.38791 * 120.91126 * 174.30642 * 15 13 12 17 17 C 1.41143 * 118.87912 * 179.97438 * 16 15 13 18 18 C 1.38466 * 120.68659 * 359.66172 * 17 16 15 19 19 N 1.34842 * 120.47098 * 0.60334 * 18 17 16 20 20 H 0.97000 * 119.02534 * 179.54570 * 19 18 17 21 21 C 1.34324 * 121.95970 * 359.52221 * 19 18 17 22 22 O 1.21793 * 120.09072 * 180.11760 * 21 19 18 23 23 C 1.50709 * 121.40638 * 180.95126 * 18 17 16 24 24 C 1.52557 * 111.34736 * 336.60856 * 23 18 17 25 25 C 1.52997 * 109.50828 * 174.77361 * 24 23 18 26 26 C 1.53000 * 109.50885 * 294.91683 * 24 23 18 27 27 C 1.53466 * 109.23689 * 54.84594 * 24 23 18 28 28 C 1.47297 * 118.95990 * 179.36725 * 17 16 15 29 29 O 1.21302 * 121.06909 * 348.57464 * 28 17 16 30 30 H 1.08996 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47223 * 300.00087 * 1 2 3 32 32 H 1.09003 * 109.47138 * 59.99986 * 1 2 3 33 33 H 0.96998 * 120.00030 * 179.97438 * 7 6 4 34 34 H 0.97002 * 120.00063 * 264.99856 * 12 2 1 35 35 H 1.07997 * 120.56352 * 359.97438 * 16 15 13 36 36 H 1.08994 * 109.10509 * 97.09205 * 23 18 17 37 37 H 1.09002 * 109.09806 * 216.13077 * 23 18 17 38 38 H 1.09007 * 109.46648 * 60.00278 * 25 24 23 39 39 H 1.09003 * 109.46871 * 179.97438 * 25 24 23 40 40 H 1.08992 * 109.47222 * 300.00383 * 25 24 23 41 41 H 1.09003 * 109.47220 * 60.00258 * 26 24 23 42 42 H 1.09004 * 109.46832 * 179.97438 * 26 24 23 43 43 H 1.08990 * 109.47166 * 300.00188 * 26 24 23 44 44 H 1.08999 * 109.89920 * 55.84261 * 27 24 23 45 45 H 1.09003 * 109.89538 * 176.89237 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8589 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9955 3.9069 11 1 0.8491 2.1774 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3571 14 8 1.9474 1.1810 -2.3908 15 6 2.5292 -0.7355 -3.5843 16 6 2.5534 -0.0867 -4.8110 17 6 2.9269 -0.8156 -5.9604 18 6 3.2707 -2.1537 -5.8678 19 7 3.2424 -2.7862 -4.6773 20 1 3.4809 -3.7256 -4.6376 21 6 2.8942 -2.1540 -3.5444 22 8 2.8823 -2.7581 -2.4869 23 6 3.6923 -2.9420 -7.0811 24 6 3.1538 -2.3169 -8.3643 25 6 3.7115 -3.0707 -9.5731 26 6 1.6260 -2.3985 -8.3703 27 6 3.5888 -0.8467 -8.4317 28 6 2.9396 -0.1324 -7.2653 29 8 2.4454 0.9670 -7.4012 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9040 -0.5273 4.4376 34 1 2.2490 -1.6318 -1.1525 35 1 2.2909 0.9583 -4.8848 36 1 4.7809 -2.9702 -7.1276 37 1 3.3135 -3.9604 -6.9941 38 1 3.4057 -4.1158 -9.5223 39 1 3.3260 -2.6238 -10.4896 40 1 4.7997 -3.0101 -9.5687 41 1 1.2299 -1.8592 -7.5098 42 1 1.2418 -1.9512 -9.2871 43 1 1.3177 -3.4426 -8.3181 44 1 4.6736 -0.7768 -8.3524 45 1 3.2564 -0.4042 -9.3708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106912759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:33 Heat of formation + Delta-G solvation = -85.142611 kcal Electronic energy + Delta-G solvation = -28801.988660 eV Core-core repulsion = 24784.580255 eV Total energy + Delta-G solvation = -4017.408405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.99867 -40.09201 -38.70978 -37.97047 -36.87779 -34.88916 -33.78674 -32.19214 -31.25920 -29.86719 -29.42333 -27.99767 -27.50025 -25.07197 -23.99590 -23.80011 -22.64410 -20.96539 -19.80122 -19.15836 -18.32197 -17.81791 -17.01034 -16.54304 -16.26049 -16.03725 -15.68338 -15.51989 -15.32332 -15.01083 -14.89722 -14.48449 -14.30570 -13.86887 -13.82004 -13.41392 -12.97197 -12.93528 -12.81457 -12.76667 -12.56826 -12.48674 -12.08681 -11.91178 -11.81296 -11.68941 -11.46200 -11.41580 -11.18779 -10.69982 -10.53553 -10.33815 -10.04620 -10.01874 -9.62907 -9.17986 -9.06254 -8.62865 -8.34172 -7.89599 -6.08081 -4.09048 0.08902 0.91432 2.16745 2.23644 2.93258 3.32465 3.43614 3.49540 3.50078 3.58311 3.77395 3.91983 4.01866 4.04600 4.18948 4.34712 4.43068 4.50564 4.63886 4.70447 4.84396 4.88419 4.99891 5.07269 5.19289 5.25514 5.26231 5.32819 5.35279 5.41467 5.52580 5.57384 5.69126 5.80826 5.99974 6.14148 6.35524 6.45124 6.50542 6.68600 6.97363 7.19899 7.36157 7.46312 7.61461 7.67544 8.33676 8.76657 8.91608 9.15267 9.53502 11.04460 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.002827 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.388898 B = 9902.514045 C =10581.703259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.232 3.768 3 H 0.050 0.950 4 C -0.528 4.528 5 H 0.081 0.919 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.686 5.686 13 C 0.560 3.440 14 O -0.560 6.560 15 C -0.249 4.249 16 C 0.071 3.929 17 C -0.280 4.280 18 C 0.249 3.751 19 N -0.596 5.596 20 H 0.420 0.580 21 C 0.532 3.468 22 O -0.506 6.506 23 C -0.096 4.096 24 C -0.052 4.052 25 C -0.141 4.141 26 C -0.158 4.158 27 C -0.157 4.157 28 C 0.417 3.583 29 O -0.449 6.449 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.410 0.590 35 H 0.159 0.841 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -8.675 -31.131 32.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.128 3.872 3 H 0.067 0.933 4 C -0.567 4.567 5 H 0.099 0.901 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.340 5.340 13 C 0.345 3.655 14 O -0.442 6.442 15 C -0.256 4.256 16 C 0.049 3.951 17 C -0.287 4.287 18 C 0.133 3.867 19 N -0.226 5.226 20 H 0.259 0.741 21 C 0.330 3.670 22 O -0.383 6.383 23 C -0.133 4.133 24 C -0.053 4.053 25 C -0.199 4.199 26 C -0.215 4.215 27 C -0.194 4.194 28 C 0.294 3.706 29 O -0.323 6.323 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.253 0.747 35 H 0.176 0.824 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.063 -7.542 -30.205 31.397 hybrid contribution -0.344 -0.256 0.395 0.583 sum 3.719 -7.798 -29.810 31.037 Atomic orbital electron populations 1.22452 0.99331 1.00855 0.99201 1.19138 0.90096 0.94847 0.83082 0.93270 1.21078 1.32844 1.14265 0.88468 0.90134 1.24837 0.95611 0.96729 0.95487 1.69880 1.45252 1.40223 0.97930 0.86877 0.80508 0.83740 0.77373 1.20356 1.22227 1.18559 1.46596 1.62965 1.15649 1.08797 1.17404 0.78506 0.86576 0.82971 1.90752 1.53700 1.13830 1.85921 1.22176 1.14460 0.92431 0.96550 1.21993 0.83703 1.00608 0.88815 1.19734 1.18527 0.93265 0.97168 1.21134 0.86774 0.92187 0.86616 1.43352 1.56719 1.15438 1.07062 0.74112 1.18395 0.77961 0.88024 0.82627 1.90823 1.53034 1.67164 1.27273 1.21078 1.03353 0.99208 0.89701 1.20464 0.96775 0.93952 0.94072 1.21862 1.01251 1.00239 0.96501 1.22093 0.93340 1.02859 1.03202 1.22483 1.02809 0.95114 0.99037 1.22054 0.75580 0.85354 0.87627 1.90606 1.36707 1.19547 1.85447 0.92813 0.93410 0.94625 0.92438 0.74746 0.82362 0.87031 0.88087 0.91780 0.91502 0.91834 0.92011 0.91420 0.91615 0.87553 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 8.96 37.16 0.33 -3.60 16 2 C 0.23 6.19 2.19 -69.08 -0.15 6.04 16 3 H 0.05 1.41 6.56 -51.93 -0.34 1.07 16 4 C -0.53 -15.66 9.31 -34.44 -0.32 -15.98 16 5 H 0.08 2.55 7.98 -52.49 -0.42 2.13 16 6 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 7 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 8 Si 0.89 23.00 24.37 -169.99 -4.14 18.86 16 9 H -0.28 -6.92 6.87 56.52 0.39 -6.54 16 10 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 11 H -0.26 -6.74 6.53 56.52 0.37 -6.37 16 12 N -0.69 -16.41 5.00 -56.09 -0.28 -16.69 16 13 C 0.56 12.42 7.72 -12.63 -0.10 12.33 16 14 O -0.56 -13.88 16.06 5.25 0.08 -13.80 16 15 C -0.25 -4.20 6.06 -102.73 -0.62 -4.82 16 16 C 0.07 1.00 9.21 -38.28 -0.35 0.65 16 17 C -0.28 -2.79 5.06 -105.03 -0.53 -3.32 16 18 C 0.25 1.70 6.18 -81.18 -0.50 1.20 16 19 N -0.60 -5.06 5.14 -9.18 -0.05 -5.11 16 20 H 0.42 2.21 8.66 -40.82 -0.35 1.86 16 21 C 0.53 7.73 7.87 -13.12 -0.10 7.63 16 22 O -0.51 -9.10 14.73 5.11 0.08 -9.03 16 23 C -0.10 -0.23 4.48 -28.11 -0.13 -0.36 16 24 C -0.05 -0.15 0.77 -154.50 -0.12 -0.27 16 25 C -0.14 -0.17 8.48 37.16 0.32 0.14 16 26 C -0.16 -0.68 8.01 37.16 0.30 -0.38 16 27 C -0.16 -0.72 5.08 -27.30 -0.14 -0.86 16 28 C 0.42 3.84 5.68 -30.28 -0.17 3.67 16 29 O -0.45 -5.90 17.21 5.54 0.10 -5.80 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.41 9.59 5.25 -40.82 -0.21 9.38 16 35 H 0.16 2.44 7.37 -52.49 -0.39 2.06 16 36 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.06 0.05 8.14 -51.92 -0.42 -0.37 16 39 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 41 H 0.06 0.41 6.04 -51.93 -0.31 0.09 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -38.76 360.50 -6.43 -45.19 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.03 Total: 3.88 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.39 Total: 4.23 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.45 Total: -48.96 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: 0.25 Total: -28.63 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.14 Total: 18.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.76 -6.43 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106912759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.956 kcal (2) G-P(sol) polarization free energy of solvation -38.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds