Wall clock time and date at job start Tue Mar 31 2020 18:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47100 * 119.99885 * 2 1 3 5 5 H 1.07998 * 120.00006 * 119.99473 * 4 2 1 6 6 C 1.37883 * 119.99912 * 300.00009 * 4 2 1 7 7 N 1.31514 * 119.99963 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00054 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47074 * 90.00241 * 8 6 4 10 10 H 1.48492 * 109.47239 * 210.00244 * 8 6 4 11 11 H 1.48502 * 109.47258 * 330.00346 * 8 6 4 12 12 N 1.46494 * 109.46843 * 239.99652 * 2 1 3 13 13 C 1.34775 * 120.00286 * 85.00404 * 12 2 1 14 14 O 1.21637 * 119.99859 * 5.11160 * 13 12 2 15 15 C 1.47178 * 120.00503 * 185.11539 * 13 12 2 16 16 C 1.38791 * 120.91126 * 174.30642 * 15 13 12 17 17 C 1.41143 * 118.87912 * 179.97438 * 16 15 13 18 18 C 1.38466 * 120.68659 * 359.66172 * 17 16 15 19 19 N 1.34842 * 120.47098 * 0.60334 * 18 17 16 20 20 H 0.97000 * 119.02534 * 179.54570 * 19 18 17 21 21 C 1.34324 * 121.95970 * 359.52221 * 19 18 17 22 22 O 1.21793 * 120.09072 * 180.11760 * 21 19 18 23 23 C 1.50709 * 121.40638 * 180.95126 * 18 17 16 24 24 C 1.52557 * 111.34736 * 336.60856 * 23 18 17 25 25 C 1.52997 * 109.50828 * 174.77361 * 24 23 18 26 26 C 1.53000 * 109.50885 * 294.91683 * 24 23 18 27 27 C 1.53466 * 109.23689 * 54.84594 * 24 23 18 28 28 C 1.47297 * 118.95990 * 179.36725 * 17 16 15 29 29 O 1.21302 * 121.06909 * 348.57464 * 28 17 16 30 30 H 1.08996 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47223 * 300.00087 * 1 2 3 32 32 H 1.09003 * 109.47138 * 59.99986 * 1 2 3 33 33 H 0.96998 * 120.00030 * 179.97438 * 7 6 4 34 34 H 0.97002 * 120.00063 * 264.99856 * 12 2 1 35 35 H 1.07997 * 120.56352 * 359.97438 * 16 15 13 36 36 H 1.08994 * 109.10509 * 97.09205 * 23 18 17 37 37 H 1.09002 * 109.09806 * 216.13077 * 23 18 17 38 38 H 1.09007 * 109.46648 * 60.00278 * 25 24 23 39 39 H 1.09003 * 109.46871 * 179.97438 * 25 24 23 40 40 H 1.08992 * 109.47222 * 300.00383 * 25 24 23 41 41 H 1.09003 * 109.47220 * 60.00258 * 26 24 23 42 42 H 1.09004 * 109.46832 * 179.97438 * 26 24 23 43 43 H 1.08990 * 109.47166 * 300.00188 * 26 24 23 44 44 H 1.08999 * 109.89920 * 55.84261 * 27 24 23 45 45 H 1.09003 * 109.89538 * 176.89237 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8589 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9955 3.9069 11 1 0.8491 2.1774 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3571 14 8 1.9474 1.1810 -2.3908 15 6 2.5292 -0.7355 -3.5843 16 6 2.5534 -0.0867 -4.8110 17 6 2.9269 -0.8156 -5.9604 18 6 3.2707 -2.1537 -5.8678 19 7 3.2424 -2.7862 -4.6773 20 1 3.4809 -3.7256 -4.6376 21 6 2.8942 -2.1540 -3.5444 22 8 2.8823 -2.7581 -2.4869 23 6 3.6923 -2.9420 -7.0811 24 6 3.1538 -2.3169 -8.3643 25 6 3.7115 -3.0707 -9.5731 26 6 1.6260 -2.3985 -8.3703 27 6 3.5888 -0.8467 -8.4317 28 6 2.9396 -0.1324 -7.2653 29 8 2.4454 0.9670 -7.4012 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9040 -0.5273 4.4376 34 1 2.2490 -1.6318 -1.1525 35 1 2.2909 0.9583 -4.8848 36 1 4.7809 -2.9702 -7.1276 37 1 3.3135 -3.9604 -6.9941 38 1 3.4057 -4.1158 -9.5223 39 1 3.3260 -2.6238 -10.4896 40 1 4.7997 -3.0101 -9.5687 41 1 1.2299 -1.8592 -7.5098 42 1 1.2418 -1.9512 -9.2871 43 1 1.3177 -3.4426 -8.3181 44 1 4.6736 -0.7768 -8.3524 45 1 3.2564 -0.4042 -9.3708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106912759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:32 Heat of formation + Delta-G solvation = -116.184991 kcal Electronic energy + Delta-G solvation = -28803.334759 eV Core-core repulsion = 24784.580255 eV Total energy + Delta-G solvation = -4018.754504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.90315 -41.01903 -40.27858 -38.81563 -37.72213 -36.83931 -34.92431 -34.38303 -32.24691 -31.53275 -29.98119 -28.44397 -28.00499 -27.28065 -24.99901 -24.78298 -23.86420 -22.24045 -21.39898 -20.12783 -19.29713 -18.93005 -18.54242 -17.71836 -17.45524 -17.21464 -17.04748 -16.65302 -16.22802 -16.08024 -15.84265 -15.68675 -15.31883 -15.10790 -14.99086 -14.86043 -14.54481 -14.21378 -14.10919 -13.66656 -13.53168 -13.30549 -13.27428 -12.87705 -12.82970 -12.76783 -12.43258 -12.20312 -12.14074 -11.75245 -11.69190 -11.66671 -11.60917 -11.54627 -11.29073 -11.05772 -10.90289 -10.67819 -9.93865 -9.30754 -8.41400 -6.48145 -0.81087 -0.10166 1.21466 1.24135 1.31711 1.34007 1.43507 1.76269 2.23839 2.44962 2.51850 2.89865 2.93431 2.98127 3.19895 3.38648 3.67267 3.77530 3.82638 4.02351 4.16529 4.34460 4.39581 4.41731 4.48942 4.58434 4.62446 4.65262 4.67823 4.81078 4.88690 4.92762 4.95124 5.00422 5.11734 5.19347 5.24358 5.29818 5.33317 5.37493 5.39332 5.43535 5.59383 5.62637 6.11507 6.48899 6.50617 6.54344 6.88749 7.13702 7.39732 8.74682 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.002827 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.388898 B = 9902.514045 C =10581.703259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.235 3.765 3 H 0.024 0.976 4 C -0.537 4.537 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.933 5.933 8 Si 0.945 3.055 9 H -0.254 1.254 10 H -0.285 1.285 11 H -0.263 1.263 12 N -0.695 5.695 13 C 0.557 3.443 14 O -0.600 6.600 15 C -0.307 4.307 16 C 0.099 3.901 17 C -0.312 4.312 18 C 0.304 3.696 19 N -0.572 5.572 20 H 0.443 0.557 21 C 0.540 3.460 22 O -0.547 6.547 23 C -0.099 4.099 24 C -0.043 4.043 25 C -0.137 4.137 26 C -0.164 4.164 27 C -0.150 4.150 28 C 0.420 3.580 29 O -0.501 6.501 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.272 0.728 34 H 0.411 0.589 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 -10.980 -35.072 37.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.131 3.869 3 H 0.042 0.958 4 C -0.575 4.575 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.771 3.229 9 H -0.180 1.180 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.351 5.351 13 C 0.346 3.654 14 O -0.485 6.485 15 C -0.314 4.314 16 C 0.076 3.924 17 C -0.317 4.317 18 C 0.186 3.814 19 N -0.201 5.201 20 H 0.287 0.713 21 C 0.339 3.661 22 O -0.428 6.428 23 C -0.135 4.135 24 C -0.043 4.043 25 C -0.194 4.194 26 C -0.222 4.222 27 C -0.187 4.187 28 C 0.300 3.700 29 O -0.379 6.379 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.254 0.746 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.159 0.841 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.154 0.846 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.925 -9.916 -34.195 35.942 hybrid contribution -0.497 0.369 1.370 1.504 sum 4.428 -9.546 -32.824 34.470 Atomic orbital electron populations 1.22329 0.97484 1.01551 0.99699 1.18859 0.91530 0.93269 0.83279 0.95782 1.21202 1.32654 1.13457 0.90215 0.93648 1.25626 0.96864 0.99712 0.94947 1.69986 1.46575 1.41994 0.98647 0.85914 0.79756 0.79831 0.77417 1.17969 1.21160 1.18826 1.46553 1.64020 1.15676 1.08806 1.18086 0.77088 0.86350 0.83896 1.90696 1.55522 1.15559 1.86749 1.21552 1.20717 0.94281 0.94850 1.21990 0.81017 0.99800 0.89565 1.19904 1.20626 0.94809 0.96375 1.21930 0.81039 0.91040 0.87351 1.43059 1.54778 1.16362 1.05938 0.71291 1.17955 0.77612 0.87022 0.83491 1.90789 1.55118 1.67687 1.29197 1.21539 1.05923 0.99841 0.86206 1.20453 0.95663 0.92890 0.95337 1.21838 1.02190 1.00428 0.94905 1.22173 0.94653 1.03468 1.01860 1.22585 1.03943 0.95619 0.96563 1.22749 0.74284 0.84576 0.88372 1.90598 1.39285 1.21930 1.86099 0.92004 0.93343 0.93536 0.91830 0.74566 0.84798 0.82626 0.84137 0.90503 0.91722 0.90143 0.94902 0.91613 0.89925 0.84595 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.62 8.96 71.98 0.65 -6.98 16 2 C 0.24 13.15 2.19 44.25 0.10 13.25 16 3 H 0.02 1.46 6.56 -2.39 -0.02 1.45 16 4 C -0.54 -33.38 9.31 25.60 0.24 -33.15 16 5 H 0.05 3.06 7.98 -2.91 -0.02 3.04 16 6 C 0.03 1.73 5.45 84.66 0.46 2.19 16 7 N -0.93 -59.74 13.96 21.45 0.30 -59.44 16 8 Si 0.94 48.12 24.37 68.60 1.67 49.79 16 9 H -0.25 -12.01 6.87 99.48 0.68 -11.33 16 10 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 11 H -0.26 -13.48 6.53 99.48 0.65 -12.83 16 12 N -0.70 -35.40 5.00 -449.62 -2.25 -37.65 16 13 C 0.56 26.43 7.72 86.59 0.67 27.10 16 14 O -0.60 -31.91 16.06 -4.15 -0.07 -31.98 16 15 C -0.31 -10.90 6.06 -18.64 -0.11 -11.01 16 16 C 0.10 2.93 9.21 23.12 0.21 3.15 16 17 C -0.31 -5.79 5.06 -20.13 -0.10 -5.89 16 18 C 0.30 2.98 6.18 42.15 0.26 3.24 16 19 N -0.57 -7.97 5.14 -301.40 -1.55 -9.52 16 20 H 0.44 2.65 8.66 -92.71 -0.80 1.85 16 21 C 0.54 15.71 7.87 86.47 0.68 16.39 16 22 O -0.55 -20.27 14.73 -4.65 -0.07 -20.34 16 23 C -0.10 0.20 4.48 29.70 0.13 0.33 16 24 C -0.04 -0.02 0.77 -52.17 -0.04 -0.06 16 25 C -0.14 0.53 8.48 71.98 0.61 1.14 16 26 C -0.16 -0.83 8.01 71.98 0.58 -0.25 16 27 C -0.15 -0.77 5.08 30.23 0.15 -0.62 16 28 C 0.42 7.18 5.68 28.29 0.16 7.34 16 29 O -0.50 -13.53 17.21 -3.10 -0.05 -13.59 16 30 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.05 2.38 3.27 -2.39 -0.01 2.37 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 34 H 0.41 20.54 5.25 -92.71 -0.49 20.06 16 35 H 0.13 4.57 7.37 -2.91 -0.02 4.55 16 36 H 0.16 -1.24 8.14 -2.39 -0.02 -1.26 16 37 H 0.14 -1.06 8.14 -2.39 -0.02 -1.08 16 38 H 0.08 -0.41 8.14 -2.38 -0.02 -0.43 16 39 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.03 0.36 6.04 -2.39 -0.01 0.35 16 42 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 43 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -94.68 360.50 2.31 -92.37 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -0.32 Total: 14.19 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 4.64 Total: 16.16 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -3.50 Total: -106.61 kcal Atomic # 8 Polarization: -65.72 SS G_CDS: -0.19 Total: -65.90 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.67 Total: 49.79 kcal Total: -94.68 2.31 -92.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106912759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.814 kcal (2) G-P(sol) polarization free energy of solvation -94.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds