Wall clock time and date at job start Tue Mar 31 2020 18:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47277 * 2 1 4 4 C 1.50700 * 109.47261 * 240.00474 * 2 1 3 5 5 H 1.08001 * 119.99694 * 239.99605 * 4 2 1 6 6 C 1.37872 * 120.00339 * 59.99577 * 4 2 1 7 7 N 1.31522 * 119.99767 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00491 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46750 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47017 * 119.99718 * 8 6 4 11 11 H 1.48493 * 109.47653 * 240.00285 * 8 6 4 12 12 N 1.46501 * 109.47182 * 120.00205 * 2 1 3 13 13 C 1.34778 * 119.99749 * 274.99860 * 12 2 1 14 14 O 1.21629 * 120.00188 * 5.10535 * 13 12 2 15 15 C 1.47189 * 119.99709 * 185.09789 * 13 12 2 16 16 C 1.38795 * 120.90525 * 174.31564 * 15 13 12 17 17 C 1.41142 * 118.87733 * 179.97438 * 16 15 13 18 18 C 1.38476 * 120.67847 * 359.61666 * 17 16 15 19 19 N 1.34845 * 120.48010 * 0.64897 * 18 17 16 20 20 H 0.97000 * 119.02346 * 179.49261 * 19 18 17 21 21 C 1.34316 * 121.95226 * 359.50589 * 19 18 17 22 22 O 1.21799 * 120.08876 * 179.80791 * 21 19 18 23 23 C 1.50715 * 121.40445 * 181.00419 * 18 17 16 24 24 C 1.52550 * 111.34141 * 336.57639 * 23 18 17 25 25 C 1.53003 * 109.50947 * 294.91680 * 24 23 18 26 26 C 1.53003 * 109.54721 * 174.80332 * 24 23 18 27 27 C 1.53467 * 109.24820 * 54.84634 * 24 23 18 28 28 C 1.47288 * 118.96632 * 179.31600 * 17 16 15 29 29 O 1.21301 * 121.06773 * 348.58755 * 28 17 16 30 30 H 1.08998 * 109.47073 * 299.99435 * 1 2 3 31 31 H 1.09004 * 109.47098 * 60.00026 * 1 2 3 32 32 H 1.09004 * 109.46687 * 179.97438 * 1 2 3 33 33 H 0.96995 * 119.99986 * 179.97438 * 7 6 4 34 34 H 0.96991 * 120.00038 * 95.00256 * 12 2 1 35 35 H 1.07998 * 120.56215 * 0.02562 * 16 15 13 36 36 H 1.09000 * 109.10351 * 97.05395 * 23 18 17 37 37 H 1.08994 * 109.10376 * 216.09686 * 23 18 17 38 38 H 1.09002 * 109.47145 * 179.77390 * 25 24 23 39 39 H 1.09002 * 109.46747 * 299.77053 * 25 24 23 40 40 H 1.08999 * 109.47348 * 59.77031 * 25 24 23 41 41 H 1.09004 * 109.46615 * 300.20815 * 26 24 23 42 42 H 1.08998 * 109.47047 * 60.20240 * 26 24 23 43 43 H 1.09002 * 109.47280 * 180.20966 * 26 24 23 44 44 H 1.08995 * 109.90378 * 176.97489 * 27 24 23 45 45 H 1.09002 * 109.96046 * 55.88128 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 3.1475 -2.2860 -3.6039 10 1 1.1678 -1.5864 -4.8165 11 1 3.1472 -0.1855 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.7712 1.1357 2.4365 15 6 2.7424 -0.6806 3.5290 16 6 2.9917 0.0261 4.6972 17 6 3.5633 -0.6518 5.7952 18 6 3.8641 -2.0011 5.7138 19 7 3.6271 -2.6873 4.5774 20 1 3.8527 -3.6300 4.5412 21 6 3.0881 -2.1041 3.4942 22 8 2.8917 -2.7556 2.4840 23 6 4.4540 -2.7462 6.8835 24 6 5.1709 -1.7991 7.8406 25 6 6.3795 -1.1791 7.1363 26 6 5.6402 -2.5750 9.0729 27 6 4.2038 -0.6883 8.2720 28 6 3.8427 0.0997 7.0307 29 8 3.7848 1.3112 7.0532 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7094 1.1619 -3.4843 34 1 2.2490 -1.6317 1.1526 35 1 2.7514 1.0769 4.7652 36 1 3.6551 -3.2582 7.4199 37 1 5.1648 -3.4852 6.5138 38 1 6.8889 -0.4994 7.8195 39 1 7.0659 -1.9686 6.8302 40 1 6.0447 -0.6278 6.2577 41 1 4.7789 -3.0178 9.5732 42 1 6.3270 -3.3638 8.7658 43 1 6.1490 -1.8964 9.7576 44 1 4.6886 -0.0355 8.9979 45 1 3.3057 -1.1255 8.7082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106912760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:37 Heat of formation + Delta-G solvation = -93.526023 kcal Electronic energy + Delta-G solvation = -28734.483506 eV Core-core repulsion = 24716.711569 eV Total energy + Delta-G solvation = -4017.771937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94201 -40.03331 -38.54591 -37.89616 -36.82292 -34.66650 -33.70276 -32.15250 -31.18852 -29.52525 -28.92497 -27.94031 -27.30958 -25.11645 -23.91132 -23.73909 -22.52125 -20.89421 -19.72545 -19.06196 -18.23714 -17.71582 -16.94744 -16.42420 -16.21179 -15.94566 -15.57696 -15.35453 -15.05791 -14.98686 -14.85459 -14.43698 -14.15704 -13.85409 -13.65769 -13.35843 -12.93804 -12.90012 -12.72742 -12.52060 -12.47773 -12.24544 -11.86428 -11.77060 -11.58136 -11.42584 -11.37971 -10.98413 -10.87389 -10.66874 -10.42982 -10.27511 -10.15138 -10.07464 -9.98419 -9.06924 -8.87937 -8.42111 -8.25954 -7.65875 -6.00068 -4.07653 0.15147 0.97783 2.22131 2.28577 3.01856 3.31887 3.38776 3.43642 3.54209 3.63383 3.81276 4.00538 4.11541 4.13442 4.27004 4.39461 4.45645 4.59574 4.68217 4.74695 4.88016 4.92754 5.03263 5.10427 5.25032 5.29331 5.31776 5.36699 5.42879 5.48579 5.58827 5.61425 5.73266 5.87440 6.12334 6.21019 6.42694 6.98231 7.14041 7.24720 7.30820 7.61764 7.62474 7.76764 7.88618 8.08627 8.29115 8.91486 8.91984 9.34753 9.59659 11.06261 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.002770 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.381893 B =10105.965077 C =10752.792705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.047 0.953 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.693 5.693 13 C 0.556 3.444 14 O -0.558 6.558 15 C -0.245 4.245 16 C 0.067 3.933 17 C -0.278 4.278 18 C 0.244 3.756 19 N -0.596 5.596 20 H 0.418 0.582 21 C 0.532 3.468 22 O -0.509 6.509 23 C -0.095 4.095 24 C -0.052 4.052 25 C -0.158 4.158 26 C -0.141 4.141 27 C -0.157 4.157 28 C 0.416 3.584 29 O -0.448 6.448 30 H 0.016 0.984 31 H 0.090 0.910 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.404 0.596 35 H 0.159 0.841 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 -11.256 27.319 31.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.065 0.935 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.346 5.346 13 C 0.341 3.659 14 O -0.440 6.440 15 C -0.252 4.252 16 C 0.045 3.955 17 C -0.284 4.284 18 C 0.129 3.871 19 N -0.226 5.226 20 H 0.258 0.742 21 C 0.330 3.670 22 O -0.387 6.387 23 C -0.132 4.132 24 C -0.053 4.053 25 C -0.215 4.215 26 C -0.198 4.198 27 C -0.194 4.194 28 C 0.293 3.707 29 O -0.322 6.322 30 H 0.035 0.965 31 H 0.108 0.892 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.245 0.755 35 H 0.176 0.824 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.905 -9.983 26.444 29.951 hybrid contribution 0.469 -1.426 -0.954 1.778 sum 10.374 -11.409 25.490 29.791 Atomic orbital electron populations 1.22060 0.98436 0.99087 1.00897 1.18770 0.91198 0.93848 0.80199 0.93521 1.21297 1.31945 1.13031 0.90277 0.91999 1.24890 0.94955 0.95027 0.98973 1.69927 1.36270 1.22593 1.23567 0.86394 0.78584 0.79559 0.82586 1.19730 1.20914 1.20932 1.46921 1.62938 1.15253 1.09534 1.17397 0.79734 0.86071 0.82701 1.90754 1.51871 1.17294 1.84104 1.22309 1.12379 0.92129 0.98425 1.21996 0.84570 1.00867 0.88111 1.19743 1.16531 0.92636 0.99520 1.21110 0.87934 0.91453 0.86611 1.43345 1.52681 1.14786 1.11805 0.74238 1.18420 0.77906 0.88549 0.82110 1.90802 1.53774 1.64749 1.29340 1.21057 1.01307 0.98164 0.92703 1.20462 0.95226 0.94158 0.95422 1.22096 0.96905 1.01462 1.01047 1.21861 1.01715 1.00159 0.96096 1.22480 1.01197 0.98370 0.97372 1.22057 0.72133 0.88539 0.87954 1.90607 1.40151 1.15567 1.85901 0.96481 0.89173 0.95548 0.92771 0.75463 0.82368 0.87137 0.88169 0.91427 0.91638 0.91964 0.91873 0.91804 0.91508 0.88051 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.26 37.16 0.34 -3.65 16 2 C 0.26 7.41 2.52 -69.08 -0.17 7.23 16 3 H 0.05 1.48 7.66 -51.93 -0.40 1.08 16 4 C -0.53 -15.32 8.73 -34.44 -0.30 -15.62 16 5 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 6 C 0.06 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -26.29 11.32 55.43 0.63 -25.67 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.69 -17.25 5.00 -56.08 -0.28 -17.53 16 13 C 0.56 12.97 7.71 -12.63 -0.10 12.87 16 14 O -0.56 -14.63 16.10 5.25 0.08 -14.55 16 15 C -0.25 -4.34 6.06 -102.72 -0.62 -4.96 16 16 C 0.07 0.99 9.21 -38.27 -0.35 0.64 16 17 C -0.28 -2.93 5.06 -105.03 -0.53 -3.46 16 18 C 0.24 1.79 6.18 -81.17 -0.50 1.29 16 19 N -0.60 -5.32 5.14 -9.18 -0.05 -5.36 16 20 H 0.42 2.34 8.66 -40.82 -0.35 1.99 16 21 C 0.53 8.00 7.87 -13.13 -0.10 7.90 16 22 O -0.51 -9.31 14.73 5.10 0.08 -9.23 16 23 C -0.09 -0.26 4.48 -28.11 -0.13 -0.39 16 24 C -0.05 -0.17 0.77 -154.49 -0.12 -0.29 16 25 C -0.16 -0.76 8.00 37.16 0.30 -0.46 16 26 C -0.14 -0.22 8.48 37.16 0.32 0.10 16 27 C -0.16 -0.78 5.08 -27.30 -0.14 -0.92 16 28 C 0.42 4.05 5.68 -30.29 -0.17 3.88 16 29 O -0.45 -6.14 17.21 5.54 0.10 -6.04 16 30 H 0.02 0.44 8.09 -51.93 -0.42 0.01 16 31 H 0.09 2.60 6.07 -51.93 -0.32 2.29 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.40 9.67 5.25 -40.82 -0.21 9.45 16 35 H 0.16 2.59 7.37 -52.49 -0.39 2.20 16 36 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.06 0.45 6.04 -51.93 -0.31 0.14 16 41 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 43 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -37.80 367.37 -7.48 -45.27 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.17 Total: 4.80 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.38 Total: 5.90 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.30 Total: -48.56 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: 0.26 Total: -29.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.80 -7.48 -45.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106912760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.254 kcal (2) G-P(sol) polarization free energy of solvation -37.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds