Wall clock time and date at job start Tue Mar 31 2020 18:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47277 * 2 1 4 4 C 1.50700 * 109.47261 * 240.00474 * 2 1 3 5 5 H 1.08001 * 119.99694 * 239.99605 * 4 2 1 6 6 C 1.37872 * 120.00339 * 59.99577 * 4 2 1 7 7 N 1.31522 * 119.99767 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00491 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46750 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47017 * 119.99718 * 8 6 4 11 11 H 1.48493 * 109.47653 * 240.00285 * 8 6 4 12 12 N 1.46501 * 109.47182 * 120.00205 * 2 1 3 13 13 C 1.34778 * 119.99749 * 274.99860 * 12 2 1 14 14 O 1.21629 * 120.00188 * 5.10535 * 13 12 2 15 15 C 1.47189 * 119.99709 * 185.09789 * 13 12 2 16 16 C 1.38795 * 120.90525 * 174.31564 * 15 13 12 17 17 C 1.41142 * 118.87733 * 179.97438 * 16 15 13 18 18 C 1.38476 * 120.67847 * 359.61666 * 17 16 15 19 19 N 1.34845 * 120.48010 * 0.64897 * 18 17 16 20 20 H 0.97000 * 119.02346 * 179.49261 * 19 18 17 21 21 C 1.34316 * 121.95226 * 359.50589 * 19 18 17 22 22 O 1.21799 * 120.08876 * 179.80791 * 21 19 18 23 23 C 1.50715 * 121.40445 * 181.00419 * 18 17 16 24 24 C 1.52550 * 111.34141 * 336.57639 * 23 18 17 25 25 C 1.53003 * 109.50947 * 294.91680 * 24 23 18 26 26 C 1.53003 * 109.54721 * 174.80332 * 24 23 18 27 27 C 1.53467 * 109.24820 * 54.84634 * 24 23 18 28 28 C 1.47288 * 118.96632 * 179.31600 * 17 16 15 29 29 O 1.21301 * 121.06773 * 348.58755 * 28 17 16 30 30 H 1.08998 * 109.47073 * 299.99435 * 1 2 3 31 31 H 1.09004 * 109.47098 * 60.00026 * 1 2 3 32 32 H 1.09004 * 109.46687 * 179.97438 * 1 2 3 33 33 H 0.96995 * 119.99986 * 179.97438 * 7 6 4 34 34 H 0.96991 * 120.00038 * 95.00256 * 12 2 1 35 35 H 1.07998 * 120.56215 * 0.02562 * 16 15 13 36 36 H 1.09000 * 109.10351 * 97.05395 * 23 18 17 37 37 H 1.08994 * 109.10376 * 216.09686 * 23 18 17 38 38 H 1.09002 * 109.47145 * 179.77390 * 25 24 23 39 39 H 1.09002 * 109.46747 * 299.77053 * 25 24 23 40 40 H 1.08999 * 109.47348 * 59.77031 * 25 24 23 41 41 H 1.09004 * 109.46615 * 300.20815 * 26 24 23 42 42 H 1.08998 * 109.47047 * 60.20240 * 26 24 23 43 43 H 1.09002 * 109.47280 * 180.20966 * 26 24 23 44 44 H 1.08995 * 109.90378 * 176.97489 * 27 24 23 45 45 H 1.09002 * 109.96046 * 55.88128 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 3.1475 -2.2860 -3.6039 10 1 1.1678 -1.5864 -4.8165 11 1 3.1472 -0.1855 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.7712 1.1357 2.4365 15 6 2.7424 -0.6806 3.5290 16 6 2.9917 0.0261 4.6972 17 6 3.5633 -0.6518 5.7952 18 6 3.8641 -2.0011 5.7138 19 7 3.6271 -2.6873 4.5774 20 1 3.8527 -3.6300 4.5412 21 6 3.0881 -2.1041 3.4942 22 8 2.8917 -2.7556 2.4840 23 6 4.4540 -2.7462 6.8835 24 6 5.1709 -1.7991 7.8406 25 6 6.3795 -1.1791 7.1363 26 6 5.6402 -2.5750 9.0729 27 6 4.2038 -0.6883 8.2720 28 6 3.8427 0.0997 7.0307 29 8 3.7848 1.3112 7.0532 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7094 1.1619 -3.4843 34 1 2.2490 -1.6317 1.1526 35 1 2.7514 1.0769 4.7652 36 1 3.6551 -3.2582 7.4199 37 1 5.1648 -3.4852 6.5138 38 1 6.8889 -0.4994 7.8195 39 1 7.0659 -1.9686 6.8302 40 1 6.0447 -0.6278 6.2577 41 1 4.7789 -3.0178 9.5732 42 1 6.3270 -3.3638 8.7658 43 1 6.1490 -1.8964 9.7576 44 1 4.6886 -0.0355 8.9979 45 1 3.3057 -1.1255 8.7082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106912760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:36 Heat of formation + Delta-G solvation = -122.575150 kcal Electronic energy + Delta-G solvation = -28735.743171 eV Core-core repulsion = 24716.711569 eV Total energy + Delta-G solvation = -4019.031602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.89093 -40.99002 -40.20652 -38.80685 -37.70008 -36.71552 -34.91205 -34.27176 -32.09417 -30.92362 -29.95785 -28.39487 -27.96689 -27.39079 -24.96925 -24.74390 -23.82068 -22.27150 -21.34829 -20.08032 -19.24020 -18.86764 -18.40818 -17.53522 -17.41197 -17.16464 -16.91910 -16.63955 -16.20324 -16.05155 -15.83505 -15.58625 -15.30417 -15.09826 -14.94386 -14.56497 -14.40828 -14.12326 -13.75497 -13.52770 -13.29604 -13.03212 -12.93719 -12.87140 -12.79528 -12.75198 -12.42885 -12.34220 -12.16903 -12.13410 -11.74764 -11.68264 -11.60244 -11.51618 -11.12721 -11.03685 -10.69649 -10.61395 -9.82398 -9.28091 -8.21361 -6.39544 -0.79814 -0.09886 1.22926 1.34822 1.39904 1.41200 1.54835 1.79595 2.33518 2.54223 2.62092 2.91312 2.98852 3.07497 3.21334 3.39983 3.67635 3.78009 3.88792 4.03258 4.17407 4.37633 4.43010 4.57935 4.65098 4.67716 4.68503 4.82443 4.87534 4.91713 4.94174 5.00440 5.02909 5.12291 5.19764 5.27675 5.33064 5.36868 5.38952 5.43848 5.56691 5.59882 5.65401 5.88849 6.04494 6.50979 6.52830 6.67553 6.96482 7.27507 7.51347 8.85896 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.002770 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.381893 B =10105.965077 C =10752.792705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.266 3.734 3 H -0.002 1.002 4 C -0.550 4.550 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.979 3.021 9 H -0.264 1.264 10 H -0.272 1.272 11 H -0.277 1.277 12 N -0.698 5.698 13 C 0.551 3.449 14 O -0.606 6.606 15 C -0.306 4.306 16 C 0.095 3.905 17 C -0.311 4.311 18 C 0.303 3.697 19 N -0.570 5.570 20 H 0.444 0.556 21 C 0.542 3.458 22 O -0.546 6.546 23 C -0.097 4.097 24 C -0.043 4.043 25 C -0.165 4.165 26 C -0.136 4.136 27 C -0.149 4.149 28 C 0.419 3.581 29 O -0.503 6.503 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.268 0.732 34 H 0.409 0.591 35 H 0.130 0.870 36 H 0.158 0.842 37 H 0.141 0.859 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.030 0.970 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.479 -15.825 30.374 36.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.163 3.837 3 H 0.016 0.984 4 C -0.588 4.588 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.554 5.554 8 Si 0.802 3.198 9 H -0.188 1.188 10 H -0.197 1.197 11 H -0.203 1.203 12 N -0.353 5.353 13 C 0.339 3.661 14 O -0.491 6.491 15 C -0.313 4.313 16 C 0.072 3.928 17 C -0.317 4.317 18 C 0.186 3.814 19 N -0.200 5.200 20 H 0.288 0.712 21 C 0.341 3.659 22 O -0.427 6.427 23 C -0.134 4.134 24 C -0.044 4.044 25 C -0.222 4.222 26 C -0.193 4.193 27 C -0.186 4.186 28 C 0.299 3.701 29 O -0.381 6.381 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.252 0.748 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.159 0.841 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.125 0.875 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.950 -14.621 29.551 35.069 hybrid contribution -0.061 0.037 -1.654 1.655 sum 11.889 -14.585 27.897 33.650 Atomic orbital electron populations 1.21875 0.98108 0.99210 0.99766 1.18437 0.91489 0.91770 0.82029 0.98432 1.21501 1.32814 1.13423 0.91018 0.91892 1.25873 0.94763 0.95654 1.02332 1.70063 1.36845 1.23801 1.24738 0.85201 0.78286 0.78397 0.77867 1.18844 1.19730 1.20254 1.46786 1.63831 1.15406 1.09274 1.18172 0.78613 0.85649 0.83662 1.90694 1.53898 1.19384 1.85134 1.21626 1.17952 0.94427 0.97269 1.21979 0.82462 0.99720 0.88659 1.19905 1.18397 0.94417 0.98971 1.21931 0.82512 0.90166 0.86820 1.43028 1.50614 1.15918 1.10480 0.71209 1.17880 0.77839 0.87205 0.82982 1.90760 1.55631 1.65124 1.31135 1.21535 1.03332 0.98104 0.90411 1.20457 0.93880 0.93632 0.96385 1.22181 0.98142 1.01901 0.99995 1.21836 1.02727 1.00082 0.94658 1.22586 1.03025 0.98453 0.94548 1.22790 0.70213 0.88039 0.89043 1.90600 1.42835 1.17964 1.86683 0.96871 0.90866 0.94566 0.92293 0.74811 0.85248 0.82462 0.84083 0.91656 0.89869 0.95071 0.90038 0.90464 0.91766 0.87516 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.61 9.26 71.98 0.67 -6.94 16 2 C 0.27 16.14 2.52 44.24 0.11 16.26 16 3 H 0.00 -0.15 7.66 -2.39 -0.02 -0.17 16 4 C -0.55 -33.25 8.73 25.60 0.22 -33.03 16 5 H 0.06 3.71 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -56.30 11.32 21.45 0.24 -56.06 16 8 Si 0.98 45.50 29.54 68.60 2.03 47.52 16 9 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 N -0.70 -37.36 5.00 -449.60 -2.25 -39.61 16 13 C 0.55 28.01 7.71 86.59 0.67 28.67 16 14 O -0.61 -35.11 16.10 -4.12 -0.07 -35.18 16 15 C -0.31 -11.52 6.06 -18.63 -0.11 -11.64 16 16 C 0.09 3.02 9.21 23.12 0.21 3.24 16 17 C -0.31 -6.25 5.06 -20.13 -0.10 -6.36 16 18 C 0.30 3.22 6.18 42.16 0.26 3.48 16 19 N -0.57 -8.24 5.14 -301.39 -1.55 -9.79 16 20 H 0.44 2.65 8.66 -92.71 -0.80 1.85 16 21 C 0.54 16.21 7.87 86.47 0.68 16.89 16 22 O -0.55 -20.16 14.73 -4.67 -0.07 -20.23 16 23 C -0.10 0.16 4.48 29.70 0.13 0.29 16 24 C -0.04 -0.05 0.77 -52.17 -0.04 -0.09 16 25 C -0.17 -1.01 8.00 71.98 0.58 -0.43 16 26 C -0.14 0.48 8.48 71.98 0.61 1.09 16 27 C -0.15 -0.89 5.08 30.23 0.15 -0.73 16 28 C 0.42 7.75 5.68 28.29 0.16 7.91 16 29 O -0.50 -14.47 17.21 -3.09 -0.05 -14.52 16 30 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 31 H 0.07 4.47 6.07 -2.39 -0.01 4.46 16 32 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.41 20.73 5.25 -92.71 -0.49 20.25 16 35 H 0.13 4.82 7.37 -2.91 -0.02 4.80 16 36 H 0.16 -1.25 8.14 -2.39 -0.02 -1.27 16 37 H 0.14 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.03 0.39 6.04 -2.39 -0.01 0.38 16 41 H 0.08 -0.50 8.14 -2.38 -0.02 -0.52 16 42 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -94.78 367.37 2.69 -92.09 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -0.24 Total: 15.91 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 4.65 Total: 19.87 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.56 Total: -105.46 kcal Atomic # 8 Polarization: -69.74 SS G_CDS: -0.19 Total: -69.93 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -94.78 2.69 -92.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106912760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.484 kcal (2) G-P(sol) polarization free energy of solvation -94.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds