Wall clock time and date at job start Tue Mar 31 2020 18:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 120.00353 * 2 1 4 4 C 1.50702 * 119.99567 * 179.97438 * 2 1 3 5 5 O 1.42902 * 109.47092 * 359.97438 * 4 2 1 6 6 C 1.35904 * 116.99700 * 179.97438 * 5 4 2 7 7 C 1.38821 * 120.01800 * 0.02573 * 6 5 4 8 8 C 1.38174 * 120.09543 * 179.97438 * 7 6 5 9 9 C 1.38155 * 120.13025 * 359.74961 * 8 7 6 10 10 C 1.38943 * 120.03167 * 0.50470 * 9 8 7 11 11 N 1.39730 * 120.04637 * 179.76847 * 10 9 8 12 12 C 1.34773 * 119.99921 * 214.82938 * 11 10 9 13 13 O 1.21381 * 119.99857 * 355.38218 * 12 11 10 14 14 C 1.49355 * 119.99942 * 175.38875 * 12 11 10 15 15 O 1.21361 * 119.99742 * 359.97438 * 14 12 11 16 16 N 1.34779 * 119.99900 * 179.72508 * 14 12 11 17 17 C 1.46498 * 119.99846 * 180.27377 * 16 14 12 18 18 H 1.09003 * 109.47169 * 324.99674 * 17 16 14 19 19 C 1.53000 * 109.47124 * 84.99713 * 17 16 14 20 20 C 1.50697 * 109.47098 * 204.99696 * 17 16 14 21 21 H 1.08001 * 119.99970 * 0.02562 * 20 17 16 22 22 C 1.37873 * 120.00274 * 180.02562 * 20 17 16 23 23 N 1.31512 * 120.00267 * 180.02562 * 22 20 17 24 24 Si 1.86802 * 119.99902 * 359.97438 * 22 20 17 25 25 H 1.48492 * 109.47166 * 90.00064 * 24 22 20 26 26 H 1.48502 * 109.47392 * 210.00550 * 24 22 20 27 27 H 1.48508 * 109.47146 * 330.00022 * 24 22 20 28 28 C 1.38567 * 120.01594 * 180.02562 * 6 5 4 29 29 H 1.08009 * 119.99973 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00706 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46650 * 239.99657 * 3 2 1 32 32 H 1.09000 * 109.47171 * 359.97438 * 3 2 1 33 33 H 1.08991 * 109.47569 * 119.99686 * 3 2 1 34 34 H 1.09008 * 109.46924 * 240.00531 * 4 2 1 35 35 H 1.09001 * 109.47166 * 120.00504 * 4 2 1 36 36 H 1.08002 * 119.94963 * 359.95781 * 7 6 5 37 37 H 1.08004 * 119.93775 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.98407 * 180.25324 * 9 8 7 39 39 H 0.96998 * 119.99998 * 34.83298 * 11 10 9 40 40 H 0.96997 * 119.99992 * 0.27068 * 16 14 12 41 41 H 1.08998 * 109.47096 * 179.97438 * 19 17 16 42 42 H 1.08996 * 109.47295 * 300.00217 * 19 17 16 43 43 H 1.09003 * 109.47130 * 59.99937 * 19 17 16 44 44 H 0.96998 * 120.00190 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.06408 * 0.05313 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 8 1.1346 -2.3913 0.0017 6 6 1.6541 -3.6471 0.0018 7 6 3.0302 -3.8295 0.0014 8 6 3.5601 -5.1056 0.0020 9 6 2.7224 -6.2043 0.0083 10 6 1.3442 -6.0280 0.0033 11 7 0.4968 -7.1390 0.0048 12 6 -0.6716 -7.0961 -0.6657 13 8 -1.0270 -6.0661 -1.2004 14 6 -1.5291 -8.3160 -0.7504 15 8 -1.1735 -9.3460 -0.2160 16 7 -2.7001 -8.2716 -1.4162 17 6 -3.5441 -9.4666 -1.4942 18 1 -2.9133 -10.3535 -1.5546 19 6 -4.4249 -9.5512 -0.2461 20 6 -4.4165 -9.3862 -2.7203 21 1 -4.3489 -8.5307 -3.3760 22 6 -5.3012 -10.4046 -3.0049 23 7 -6.0623 -10.3346 -4.0751 24 14 -5.4178 -11.8846 -1.8711 25 1 -6.4379 -11.6263 -0.8234 26 1 -5.8086 -13.0817 -2.6582 27 1 -4.0993 -12.1224 -1.2303 28 6 0.8102 -4.7462 0.0023 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5401 -0.9352 0.0004 31 1 2.6902 1.3626 -0.8900 32 1 1.3553 2.1336 -0.0005 33 1 2.6901 1.3628 0.8899 34 1 2.6900 -1.3626 0.8907 35 1 2.6901 -1.3633 -0.8893 36 1 3.6877 -2.9726 0.0003 37 1 4.6311 -5.2446 0.0013 38 1 3.1391 -7.2006 0.0129 39 1 0.7494 -7.9410 0.4883 40 1 -2.9841 -7.4485 -1.8436 41 1 -5.0531 -10.4401 -0.3043 42 1 -3.7939 -9.6094 0.6407 43 1 -5.0556 -8.6643 -0.1856 44 1 -6.6849 -11.0510 -4.2752 45 1 -0.2607 -4.6062 0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123144228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:46 Heat of formation + Delta-G solvation = -74.113179 kcal Electronic energy + Delta-G solvation = -27252.879219 eV Core-core repulsion = 23235.949086 eV Total energy + Delta-G solvation = -4016.930133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.21682 -41.11097 -40.01993 -38.64956 -37.18506 -36.31772 -35.53040 -34.42857 -31.96695 -31.55672 -30.52037 -28.11573 -27.90415 -27.30101 -26.42432 -24.07258 -23.25140 -22.32117 -21.37435 -20.32181 -19.67900 -19.26626 -18.48978 -17.89304 -17.36674 -17.24549 -17.03225 -16.95853 -16.83181 -16.63051 -16.00263 -15.53466 -15.16352 -15.03805 -14.76975 -14.58804 -14.51260 -14.37824 -14.15968 -13.80127 -13.74254 -13.56472 -13.29019 -13.00630 -12.79911 -12.75950 -12.57947 -12.37624 -12.16951 -12.14811 -11.94210 -11.58591 -11.37288 -11.35457 -10.90973 -10.70349 -10.15774 -10.03306 -9.54837 -9.13304 -8.39319 -6.48097 -0.11825 0.41296 0.52711 1.20524 1.22871 1.29892 1.37204 1.46706 2.01624 2.10225 2.25695 2.64643 2.74893 2.95905 3.35618 3.71268 3.89653 4.07193 4.13933 4.21540 4.22822 4.32468 4.34731 4.37553 4.48553 4.49753 4.58643 4.61126 4.71423 4.85356 4.89969 4.98584 5.13744 5.14325 5.18591 5.20639 5.29016 5.31141 5.42822 5.43284 5.60188 5.67410 5.82988 5.89614 6.08228 6.44494 6.44803 6.53884 6.67180 6.89523 7.19138 8.76044 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.002243 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.855301 B =12477.642240 C =13613.386591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.146 4.146 3 C -0.110 4.110 4 C 0.087 3.913 5 O -0.332 6.332 6 C 0.134 3.866 7 C -0.215 4.215 8 C -0.053 4.053 9 C -0.173 4.173 10 C 0.163 3.837 11 N -0.632 5.632 12 C 0.515 3.485 13 O -0.518 6.518 14 C 0.503 3.497 15 O -0.548 6.548 16 N -0.667 5.667 17 C 0.240 3.760 18 H 0.041 0.959 19 C -0.158 4.158 20 C -0.542 4.542 21 H 0.051 0.949 22 C 0.027 3.973 23 N -0.933 5.933 24 Si 0.944 3.056 25 H -0.258 1.258 26 H -0.292 1.292 27 H -0.253 1.253 28 C -0.183 4.183 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.170 0.830 38 H 0.155 0.845 39 H 0.434 0.566 40 H 0.412 0.588 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.272 0.728 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.325 17.753 12.552 31.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.146 4.146 3 C -0.166 4.166 4 C 0.013 3.987 5 O -0.246 6.246 6 C 0.088 3.912 7 C -0.234 4.234 8 C -0.071 4.071 9 C -0.193 4.193 10 C 0.069 3.931 11 N -0.280 5.280 12 C 0.297 3.703 13 O -0.392 6.392 14 C 0.283 3.717 15 O -0.427 6.427 16 N -0.317 5.317 17 C 0.136 3.864 18 H 0.059 0.941 19 C -0.216 4.216 20 C -0.580 4.580 21 H 0.069 0.931 22 C -0.173 4.173 23 N -0.571 5.571 24 Si 0.770 3.230 25 H -0.183 1.183 26 H -0.219 1.219 27 H -0.177 1.177 28 C -0.204 4.204 29 H 0.131 0.869 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.176 0.824 37 H 0.188 0.812 38 H 0.172 0.828 39 H 0.275 0.725 40 H 0.248 0.752 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 22.909 17.691 12.407 31.492 hybrid contribution -0.897 -0.756 -0.091 1.177 sum 22.012 16.935 12.316 30.381 Atomic orbital electron populations 1.23836 0.96128 1.02150 1.00546 1.21869 0.95826 0.95017 1.01889 1.20811 1.00488 0.91827 1.03480 1.21796 0.90952 0.82627 1.03311 1.86039 1.37345 1.12607 1.88650 1.18823 0.92519 0.83845 0.96001 1.21596 0.92609 1.00320 1.08921 1.21181 1.01331 0.90203 0.94399 1.21197 0.89741 1.01833 1.06520 1.17592 0.90317 0.85230 0.99987 1.43013 1.17903 1.17329 1.49716 1.20270 0.82601 0.88386 0.79056 1.90781 1.71412 1.31985 1.45065 1.19977 0.82778 0.88271 0.80663 1.90709 1.72799 1.32250 1.46948 1.45989 1.18663 1.16235 1.50769 1.19043 0.88873 0.84335 0.94154 0.94090 1.22373 0.99850 1.01641 0.97747 1.21190 1.21416 1.07239 1.08153 0.93070 1.25643 0.94265 1.00822 0.96554 1.69986 1.24586 1.34893 1.27640 0.85925 0.80112 0.78316 0.78621 1.18330 1.21878 1.17683 1.20391 1.00453 0.90351 1.09206 0.86874 0.89711 0.90270 0.90836 0.90031 0.88959 0.89431 0.82434 0.81248 0.82766 0.72529 0.75220 0.93273 0.92584 0.91802 0.91883 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.50 13.68 67.79 0.93 -2.57 16 2 C -0.15 -2.18 6.05 -16.48 -0.10 -2.28 16 3 C -0.11 -0.91 10.12 71.24 0.72 -0.19 16 4 C 0.09 1.30 5.15 71.24 0.37 1.66 16 5 O -0.33 -7.86 8.53 -92.47 -0.79 -8.64 16 6 C 0.13 3.15 6.68 22.49 0.15 3.30 16 7 C -0.22 -3.43 9.04 22.39 0.20 -3.23 16 8 C -0.05 -0.71 10.03 22.23 0.22 -0.49 16 9 C -0.17 -3.00 9.96 22.42 0.22 -2.78 16 10 C 0.16 4.01 6.29 38.20 0.24 4.25 16 11 N -0.63 -16.51 5.32 -304.88 -1.62 -18.13 16 12 C 0.51 17.12 7.73 87.24 0.67 17.80 16 13 O -0.52 -19.44 13.91 -3.34 -0.05 -19.48 16 14 C 0.50 18.99 7.85 87.24 0.68 19.67 16 15 O -0.55 -21.88 16.14 -3.28 -0.05 -21.93 16 16 N -0.67 -27.70 5.06 -447.53 -2.27 -29.96 16 17 C 0.24 11.26 2.15 44.24 0.10 11.36 16 18 H 0.04 2.05 6.64 -2.39 -0.02 2.03 16 19 C -0.16 -6.67 8.96 71.98 0.65 -6.03 16 20 C -0.54 -29.89 9.31 25.60 0.24 -29.65 16 21 H 0.05 3.08 7.98 -2.91 -0.02 3.05 16 22 C 0.03 1.53 5.45 84.65 0.46 1.99 16 23 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 24 Si 0.94 43.46 24.37 68.60 1.67 45.13 16 25 H -0.26 -11.11 6.87 99.48 0.68 -10.42 16 26 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 27 H -0.25 -11.19 6.53 99.48 0.65 -10.54 16 28 C -0.18 -5.19 8.63 22.50 0.19 -5.00 16 29 H 0.11 1.67 7.83 -2.91 -0.02 1.65 16 30 H 0.08 2.00 6.84 -2.91 -0.02 1.98 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.56 7.78 -2.39 -0.02 0.54 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.09 0.98 7.66 -2.38 -0.02 0.96 16 35 H 0.09 1.02 7.66 -2.39 -0.02 1.01 16 36 H 0.16 1.49 6.29 -2.91 -0.02 1.47 16 37 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.43 9.36 8.30 -92.71 -0.77 8.59 16 40 H 0.41 16.68 8.01 -92.71 -0.74 15.94 16 41 H 0.05 2.09 3.27 -2.39 -0.01 2.08 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.12 4.01 6.22 -2.91 -0.02 3.99 16 Total: -1.00 -70.93 376.37 2.60 -68.33 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.55 Total: 32.71 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.95 Total: 7.82 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -3.59 Total: -103.94 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.89 Total: -50.06 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.67 Total: 45.13 kcal Total: -70.93 2.60 -68.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123144228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.779 kcal (2) G-P(sol) polarization free energy of solvation -70.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds