Wall clock time and date at job start Tue Mar 31 2020 18:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47167 * 2 1 4 4 C 1.50694 * 109.47614 * 239.99689 * 2 1 3 5 5 H 1.08001 * 120.00204 * 240.00707 * 4 2 1 6 6 C 1.37885 * 119.99774 * 60.00001 * 4 2 1 7 7 N 1.31514 * 119.99548 * 179.72683 * 6 4 2 8 8 Si 1.86796 * 119.99883 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47354 * 269.72613 * 8 6 4 10 10 H 1.48494 * 109.47097 * 29.72877 * 8 6 4 11 11 H 1.48505 * 109.46851 * 149.72484 * 8 6 4 12 12 N 1.46501 * 109.46986 * 119.99523 * 2 1 3 13 13 C 1.34780 * 120.00304 * 275.00141 * 12 2 1 14 14 O 1.21354 * 119.99667 * 359.97438 * 13 12 2 15 15 C 1.49335 * 119.99853 * 179.97438 * 13 12 2 16 16 O 1.21387 * 120.00222 * 0.02562 * 15 13 12 17 17 N 1.34772 * 119.99693 * 179.97438 * 15 13 12 18 18 C 1.39879 * 120.00128 * 175.53212 * 17 15 13 19 19 C 1.38796 * 120.09434 * 34.66234 * 18 17 15 20 20 C 1.38173 * 119.98062 * 180.02562 * 19 18 17 21 21 C 1.38301 * 120.16950 * 0.02562 * 20 19 18 22 22 C 1.38242 * 120.19748 * 359.97438 * 21 20 19 23 23 C 1.38545 * 120.01752 * 359.76276 * 22 21 20 24 24 O 1.35964 * 120.08685 * 180.27627 * 23 22 21 25 25 C 1.42900 * 116.99951 * 0.23506 * 24 23 22 26 26 C 1.52997 * 109.47016 * 180.02562 * 25 24 23 27 27 C 1.53005 * 117.49526 * 243.61983 * 26 25 24 28 28 C 1.52999 * 117.49911 * 174.99796 * 26 25 24 29 29 H 1.08996 * 109.47111 * 300.00288 * 1 2 3 30 30 H 1.08998 * 109.46815 * 60.00518 * 1 2 3 31 31 H 1.09002 * 109.46737 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99291 * 180.27437 * 7 6 4 33 33 H 0.97001 * 119.99902 * 95.00386 * 12 2 1 34 34 H 0.96997 * 120.00495 * 355.54051 * 17 15 13 35 35 H 1.07999 * 120.01173 * 0.02895 * 19 18 17 36 36 H 1.07998 * 119.91225 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.89777 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.98887 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47052 * 299.99798 * 25 24 23 40 40 H 1.09001 * 109.46847 * 59.99777 * 25 24 23 41 41 H 1.09002 * 115.55078 * 29.32600 * 26 25 24 42 42 H 1.08988 * 117.50146 * 0.02562 * 27 26 25 43 43 H 1.09004 * 117.49082 * 145.02279 * 27 26 25 44 44 H 1.09001 * 117.50215 * 214.97756 * 28 26 25 45 45 H 1.09006 * 117.49703 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1423 -0.8563 -3.5564 8 14 0.6260 1.2797 -2.6541 9 1 -0.8016 0.8739 -2.7060 10 1 0.8443 2.1741 -1.4891 11 1 0.9820 1.9988 -3.9038 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8588 1.1595 2.4115 15 6 2.6442 -0.7222 3.5767 16 8 2.9329 -1.9000 3.5222 17 7 2.7734 -0.0497 4.7375 18 6 3.1492 -0.7288 5.9011 19 6 4.0373 -1.7931 5.8298 20 6 4.4066 -2.4626 6.9807 21 6 3.8931 -2.0754 8.2051 22 6 3.0080 -1.0164 8.2845 23 6 2.6365 -0.3361 7.1362 24 8 1.7705 0.7093 7.2133 25 6 1.2860 1.0558 8.5123 26 6 0.3307 2.2455 8.3995 27 6 0.7404 3.5483 9.0893 28 6 -0.3892 2.6966 9.6720 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9113 -0.5225 -4.4374 33 1 2.2490 -1.6317 1.1527 34 1 2.6056 0.9052 4.7661 35 1 4.4397 -2.0978 4.8750 36 1 5.0974 -3.2908 6.9239 37 1 4.1850 -2.6016 9.1020 38 1 2.6094 -0.7167 9.2424 39 1 0.7570 0.2050 8.9417 40 1 2.1257 1.3231 9.1538 41 1 -0.2141 2.3235 7.4586 42 1 1.6906 3.5580 9.6229 43 1 0.4652 4.4838 8.6020 44 1 -1.4073 3.0717 9.5683 45 1 -0.1817 2.1460 10.5897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123154518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:35 Heat of formation + Delta-G solvation = -43.983508 kcal Electronic energy + Delta-G solvation = -27704.486969 eV Core-core repulsion = 23688.863356 eV Total energy + Delta-G solvation = -4015.623613 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.07571 -39.97434 -38.58951 -37.83517 -36.82712 -35.51242 -34.65671 -32.41679 -30.48700 -30.12003 -29.85543 -27.75742 -25.38965 -24.94331 -23.06762 -22.83569 -22.26926 -21.16867 -20.57811 -19.75025 -18.93800 -18.27184 -17.37026 -16.76896 -16.39958 -16.26149 -15.82293 -15.57640 -15.32141 -15.18306 -14.91468 -14.53628 -14.34417 -14.08538 -13.72706 -13.26750 -13.15156 -13.09258 -12.87990 -12.25997 -12.09935 -12.02429 -11.93708 -11.89480 -11.62365 -11.48058 -11.37561 -11.10918 -10.91856 -10.83812 -10.52814 -10.35907 -10.24126 -9.72471 -9.30964 -9.16997 -8.82593 -8.80289 -8.36513 -8.03013 -6.23771 -4.27543 0.97708 1.20310 1.81396 2.57179 2.74401 3.20931 3.33113 3.35975 3.36146 3.46917 3.68795 4.00142 4.24471 4.28042 4.40068 4.50745 4.62383 4.67926 4.77452 4.88239 4.94850 5.07252 5.09506 5.09986 5.18692 5.22054 5.34578 5.44743 5.59029 5.65481 5.76433 5.91596 6.03830 6.22953 6.25773 6.27984 6.36384 6.45867 6.61394 6.72830 6.92463 7.10990 7.12087 7.20734 7.39660 7.77693 8.06138 8.38937 8.53432 8.76785 9.34799 10.88207 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.002732 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.373386 B =10247.285311 C =12067.873244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.235 3.765 3 H 0.054 0.946 4 C -0.538 4.538 5 H 0.084 0.916 6 C 0.080 3.920 7 N -0.889 5.889 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.261 1.261 11 H -0.293 1.293 12 N -0.662 5.662 13 C 0.498 3.502 14 O -0.535 6.535 15 C 0.509 3.491 16 O -0.506 6.506 17 N -0.640 5.640 18 C 0.118 3.882 19 C -0.084 4.084 20 C -0.137 4.137 21 C -0.096 4.096 22 C -0.194 4.194 23 C 0.109 3.891 24 O -0.310 6.310 25 C 0.094 3.906 26 C -0.158 4.158 27 C -0.175 4.175 28 C -0.170 4.170 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.268 0.732 33 H 0.409 0.591 34 H 0.425 0.575 35 H 0.149 0.851 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.193 2.806 28.490 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.576 4.576 5 H 0.101 0.899 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.186 1.186 11 H -0.220 1.220 12 N -0.311 5.311 13 C 0.277 3.723 14 O -0.413 6.413 15 C 0.292 3.708 16 O -0.380 6.380 17 N -0.287 5.287 18 C 0.024 3.976 19 C -0.104 4.104 20 C -0.156 4.156 21 C -0.114 4.114 22 C -0.214 4.214 23 C 0.061 3.939 24 O -0.224 6.224 25 C 0.019 3.981 26 C -0.177 4.177 27 C -0.212 4.212 28 C -0.207 4.207 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.244 0.756 34 H 0.263 0.737 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.309 2.936 28.012 28.167 hybrid contribution -0.622 0.664 0.004 0.910 sum -0.931 3.600 28.016 28.262 Atomic orbital electron populations 1.22469 0.98743 1.01304 0.99604 1.19306 0.90533 0.94800 0.82142 0.92821 1.21001 1.33613 1.14741 0.88276 0.89852 1.24821 0.95459 0.96716 0.95430 1.69865 1.44545 1.40035 0.98076 0.86882 0.80567 0.83516 0.77584 1.20191 1.18602 1.22023 1.46119 1.61590 1.14792 1.08584 1.19686 0.80898 0.87203 0.84520 1.90729 1.50632 1.15232 1.84722 1.20762 0.78288 0.87001 0.84770 1.90727 1.47120 1.15555 1.84564 1.42997 1.66394 1.13248 1.06096 1.17109 0.99142 0.97933 0.83456 1.21280 0.94467 0.94273 1.00384 1.21002 1.01787 1.01042 0.91797 1.20943 0.96399 0.96125 0.97973 1.21021 1.03644 0.99836 0.96866 1.18742 0.92135 0.89839 0.93145 1.86049 1.58384 1.46504 1.31430 1.22292 0.96154 0.96471 0.83185 1.22123 1.02015 0.94837 0.98686 1.23107 0.99422 0.95131 1.03540 1.22993 0.97886 1.03502 0.96312 0.94362 0.93051 0.92446 0.92164 0.75564 0.73663 0.83301 0.85338 0.85680 0.85245 0.91518 0.91810 0.86293 0.88541 0.88261 0.88096 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.96 37.16 0.33 -3.27 16 2 C 0.23 5.58 2.15 -69.09 -0.15 5.43 16 3 H 0.05 1.37 6.63 -51.93 -0.34 1.02 16 4 C -0.54 -14.56 9.31 -34.44 -0.32 -14.88 16 5 H 0.08 2.39 7.98 -52.49 -0.42 1.97 16 6 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 7 N -0.89 -26.21 13.96 55.43 0.77 -25.43 16 8 Si 0.89 21.38 24.37 -169.99 -4.14 17.24 16 9 H -0.28 -6.43 6.88 56.52 0.39 -6.04 16 10 H -0.26 -6.20 6.52 56.52 0.37 -5.83 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 N -0.66 -13.73 5.06 -55.41 -0.28 -14.01 16 13 C 0.50 9.70 7.85 -11.64 -0.09 9.61 16 14 O -0.53 -11.35 16.14 5.49 0.09 -11.26 16 15 C 0.51 8.66 7.73 -11.64 -0.09 8.57 16 16 O -0.51 -9.06 13.89 5.46 0.08 -8.98 16 17 N -0.64 -9.42 5.18 -10.19 -0.05 -9.47 16 18 C 0.12 1.61 6.32 -83.56 -0.53 1.08 16 19 C -0.08 -1.08 8.70 -39.40 -0.34 -1.43 16 20 C -0.14 -1.41 10.04 -39.58 -0.40 -1.81 16 21 C -0.10 -0.86 10.04 -39.56 -0.40 -1.25 16 22 C -0.19 -1.84 9.04 -39.47 -0.36 -2.20 16 23 C 0.11 1.28 6.70 -39.05 -0.26 1.02 16 24 O -0.31 -3.53 9.69 -19.63 -0.19 -3.72 16 25 C 0.09 0.76 5.02 37.16 0.19 0.94 16 26 C -0.16 -1.22 6.06 -90.62 -0.55 -1.76 16 27 C -0.18 -1.12 10.18 -26.73 -0.27 -1.39 16 28 C -0.17 -0.98 10.25 -26.73 -0.27 -1.25 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.16 3.28 -51.93 -0.17 0.99 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.41 8.03 8.01 -40.82 -0.33 7.70 16 34 H 0.43 5.94 8.03 -40.82 -0.33 5.61 16 35 H 0.15 2.08 6.19 -52.49 -0.33 1.76 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 39 H 0.07 0.47 7.65 -51.93 -0.40 0.07 16 40 H 0.06 0.43 7.41 -51.93 -0.38 0.04 16 41 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.10 0.55 8.03 -51.94 -0.42 0.13 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -31.29 375.38 -7.68 -38.98 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.01 Total: 11.47 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -3.61 Total: -0.46 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.44 Total: -48.92 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.03 Total: -23.97 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.29 -7.68 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123154518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.007 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds