Wall clock time and date at job start Tue Mar 31 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47167 * 2 1 4 4 C 1.50694 * 109.47614 * 239.99689 * 2 1 3 5 5 H 1.08001 * 120.00204 * 240.00707 * 4 2 1 6 6 C 1.37885 * 119.99774 * 60.00001 * 4 2 1 7 7 N 1.31514 * 119.99548 * 179.72683 * 6 4 2 8 8 Si 1.86796 * 119.99883 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47354 * 269.72613 * 8 6 4 10 10 H 1.48494 * 109.47097 * 29.72877 * 8 6 4 11 11 H 1.48505 * 109.46851 * 149.72484 * 8 6 4 12 12 N 1.46501 * 109.46986 * 119.99523 * 2 1 3 13 13 C 1.34780 * 120.00304 * 275.00141 * 12 2 1 14 14 O 1.21354 * 119.99667 * 359.97438 * 13 12 2 15 15 C 1.49335 * 119.99853 * 179.97438 * 13 12 2 16 16 O 1.21387 * 120.00222 * 0.02562 * 15 13 12 17 17 N 1.34772 * 119.99693 * 179.97438 * 15 13 12 18 18 C 1.39879 * 120.00128 * 175.53212 * 17 15 13 19 19 C 1.38796 * 120.09434 * 34.66234 * 18 17 15 20 20 C 1.38173 * 119.98062 * 180.02562 * 19 18 17 21 21 C 1.38301 * 120.16950 * 0.02562 * 20 19 18 22 22 C 1.38242 * 120.19748 * 359.97438 * 21 20 19 23 23 C 1.38545 * 120.01752 * 359.76276 * 22 21 20 24 24 O 1.35964 * 120.08685 * 180.27627 * 23 22 21 25 25 C 1.42900 * 116.99951 * 0.23506 * 24 23 22 26 26 C 1.52997 * 109.47016 * 180.02562 * 25 24 23 27 27 C 1.53005 * 117.49526 * 243.61983 * 26 25 24 28 28 C 1.52999 * 117.49911 * 174.99796 * 26 25 24 29 29 H 1.08996 * 109.47111 * 300.00288 * 1 2 3 30 30 H 1.08998 * 109.46815 * 60.00518 * 1 2 3 31 31 H 1.09002 * 109.46737 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99291 * 180.27437 * 7 6 4 33 33 H 0.97001 * 119.99902 * 95.00386 * 12 2 1 34 34 H 0.96997 * 120.00495 * 355.54051 * 17 15 13 35 35 H 1.07999 * 120.01173 * 0.02895 * 19 18 17 36 36 H 1.07998 * 119.91225 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.89777 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.98887 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47052 * 299.99798 * 25 24 23 40 40 H 1.09001 * 109.46847 * 59.99777 * 25 24 23 41 41 H 1.09002 * 115.55078 * 29.32600 * 26 25 24 42 42 H 1.08988 * 117.50146 * 0.02562 * 27 26 25 43 43 H 1.09004 * 117.49082 * 145.02279 * 27 26 25 44 44 H 1.09001 * 117.50215 * 214.97756 * 28 26 25 45 45 H 1.09006 * 117.49703 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1423 -0.8563 -3.5564 8 14 0.6260 1.2797 -2.6541 9 1 -0.8016 0.8739 -2.7060 10 1 0.8443 2.1741 -1.4891 11 1 0.9820 1.9988 -3.9038 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8588 1.1595 2.4115 15 6 2.6442 -0.7222 3.5767 16 8 2.9329 -1.9000 3.5222 17 7 2.7734 -0.0497 4.7375 18 6 3.1492 -0.7288 5.9011 19 6 4.0373 -1.7931 5.8298 20 6 4.4066 -2.4626 6.9807 21 6 3.8931 -2.0754 8.2051 22 6 3.0080 -1.0164 8.2845 23 6 2.6365 -0.3361 7.1362 24 8 1.7705 0.7093 7.2133 25 6 1.2860 1.0558 8.5123 26 6 0.3307 2.2455 8.3995 27 6 0.7404 3.5483 9.0893 28 6 -0.3892 2.6966 9.6720 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9113 -0.5225 -4.4374 33 1 2.2490 -1.6317 1.1527 34 1 2.6056 0.9052 4.7661 35 1 4.4397 -2.0978 4.8750 36 1 5.0974 -3.2908 6.9239 37 1 4.1850 -2.6016 9.1020 38 1 2.6094 -0.7167 9.2424 39 1 0.7570 0.2050 8.9417 40 1 2.1257 1.3231 9.1538 41 1 -0.2141 2.3235 7.4586 42 1 1.6906 3.5580 9.6229 43 1 0.4652 4.4838 8.6020 44 1 -1.4073 3.0717 9.5683 45 1 -0.1817 2.1460 10.5897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123154518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:34 Heat of formation + Delta-G solvation = -65.292880 kcal Electronic energy + Delta-G solvation = -27705.411013 eV Core-core repulsion = 23688.863356 eV Total energy + Delta-G solvation = -4016.547656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.23053 -41.09505 -39.86104 -38.72977 -37.50323 -37.19248 -35.95487 -34.43018 -31.94842 -31.27657 -30.81336 -28.42058 -27.30315 -26.42449 -24.08212 -23.34717 -23.18337 -22.44230 -21.54903 -21.24481 -20.27124 -19.26464 -18.53146 -18.40479 -17.53844 -17.41128 -17.10740 -16.94437 -16.63548 -16.05726 -15.96490 -15.65972 -15.33106 -15.17210 -15.01053 -14.85347 -14.74604 -14.16853 -13.96477 -13.86360 -13.75016 -13.29695 -13.02995 -12.79658 -12.70137 -12.51599 -12.43943 -12.26956 -12.16936 -12.01809 -11.61510 -11.54797 -11.39342 -11.35513 -10.90936 -10.90746 -10.67525 -10.15339 -9.66817 -8.94917 -8.39508 -6.47836 -0.07523 0.37669 0.55199 1.25547 1.29184 1.36864 1.46264 2.00846 2.06235 2.25540 2.62276 2.75954 2.86645 2.95843 3.37280 3.66533 3.86181 3.90390 3.98826 4.04208 4.19630 4.25275 4.37278 4.39220 4.43466 4.48443 4.49211 4.56368 4.60712 4.73679 4.76851 4.89580 4.99637 5.06511 5.17816 5.18571 5.21116 5.22417 5.30481 5.37433 5.43326 5.54292 5.79164 5.82291 6.08280 6.33723 6.45580 6.54823 6.70122 6.91812 7.19550 8.75847 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.002732 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.373386 B =10247.285311 C =12067.873244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.240 3.760 3 H 0.039 0.961 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.029 3.971 7 N -0.932 5.932 8 Si 0.942 3.058 9 H -0.257 1.257 10 H -0.255 1.255 11 H -0.291 1.291 12 N -0.666 5.666 13 C 0.501 3.499 14 O -0.551 6.551 15 C 0.515 3.485 16 O -0.519 6.519 17 N -0.627 5.627 18 C 0.081 3.919 19 C -0.101 4.101 20 C -0.141 4.141 21 C -0.082 4.082 22 C -0.190 4.190 23 C 0.105 3.895 24 O -0.330 6.330 25 C 0.090 3.910 26 C -0.179 4.179 27 C -0.177 4.177 28 C -0.155 4.155 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.272 0.728 33 H 0.413 0.587 34 H 0.426 0.574 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 3.247 32.047 32.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.136 3.864 3 H 0.057 0.943 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.570 5.570 8 Si 0.768 3.232 9 H -0.183 1.183 10 H -0.179 1.179 11 H -0.218 1.218 12 N -0.316 5.316 13 C 0.281 3.719 14 O -0.431 6.431 15 C 0.297 3.703 16 O -0.395 6.395 17 N -0.273 5.273 18 C -0.013 4.013 19 C -0.121 4.121 20 C -0.160 4.160 21 C -0.100 4.100 22 C -0.209 4.209 23 C 0.057 3.943 24 O -0.244 6.244 25 C 0.016 3.984 26 C -0.197 4.197 27 C -0.214 4.214 28 C -0.192 4.192 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.265 0.735 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.180 0.820 38 H 0.178 0.822 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.042 3.378 31.626 31.823 hybrid contribution -0.314 0.493 -0.940 1.106 sum -1.356 3.871 30.686 30.959 Atomic orbital electron populations 1.22375 0.97014 1.02066 1.00163 1.19025 0.91786 0.93597 0.81949 0.94349 1.21187 1.32921 1.13887 0.89914 0.92829 1.25606 0.96798 0.99623 0.95049 1.69983 1.46323 1.41978 0.98756 0.85957 0.79647 0.79938 0.77634 1.18290 1.17926 1.21827 1.45961 1.62189 1.14966 1.08444 1.20043 0.80022 0.86925 0.84863 1.90708 1.51205 1.16012 1.85153 1.20148 0.78816 0.86665 0.84670 1.90727 1.48199 1.15867 1.84700 1.42847 1.65310 1.13215 1.05937 1.17369 1.01172 0.99228 0.83490 1.21265 0.95173 0.94878 1.00760 1.21292 1.01995 1.01232 0.91482 1.21399 0.94699 0.95287 0.98625 1.21421 1.03053 0.99232 0.97213 1.18868 0.92125 0.90144 0.93113 1.86033 1.58357 1.46418 1.33627 1.22525 0.96840 0.96963 0.82094 1.22109 1.02965 0.95732 0.98902 1.23190 1.00298 0.94531 1.03396 1.23094 0.97856 1.02460 0.95775 0.92886 0.93268 0.91663 0.91868 0.75095 0.73508 0.85281 0.83290 0.81961 0.82181 0.90298 0.90044 0.88320 0.87586 0.88519 0.87697 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.82 8.96 71.98 0.65 -6.18 16 2 C 0.24 11.48 2.15 44.24 0.10 11.57 16 3 H 0.04 1.97 6.63 -2.39 -0.02 1.95 16 4 C -0.54 -29.97 9.31 25.60 0.24 -29.73 16 5 H 0.05 3.21 7.98 -2.91 -0.02 3.19 16 6 C 0.03 1.66 5.45 84.66 0.46 2.12 16 7 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 8 Si 0.94 43.87 24.37 68.60 1.67 45.55 16 9 H -0.26 -11.21 6.88 99.48 0.68 -10.53 16 10 H -0.25 -11.54 6.52 99.48 0.65 -10.89 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 N -0.67 -28.17 5.06 -447.56 -2.27 -30.44 16 13 C 0.50 19.84 7.85 87.23 0.68 20.52 16 14 O -0.55 -23.56 16.14 -3.26 -0.05 -23.61 16 15 C 0.51 17.93 7.73 87.23 0.67 18.61 16 16 O -0.52 -19.13 13.89 -3.36 -0.05 -19.18 16 17 N -0.63 -18.77 5.18 -304.50 -1.58 -20.35 16 18 C 0.08 2.18 6.32 38.26 0.24 2.43 16 19 C -0.10 -2.58 8.70 22.39 0.19 -2.38 16 20 C -0.14 -2.60 10.04 22.27 0.22 -2.38 16 21 C -0.08 -1.15 10.04 22.29 0.22 -0.93 16 22 C -0.19 -2.96 9.04 22.34 0.20 -2.76 16 23 C 0.10 2.32 6.70 22.62 0.15 2.47 16 24 O -0.33 -7.17 9.69 -93.14 -0.90 -8.07 16 25 C 0.09 1.25 5.02 71.98 0.36 1.61 16 26 C -0.18 -2.52 6.06 -10.79 -0.07 -2.59 16 27 C -0.18 -1.98 10.18 30.60 0.31 -1.67 16 28 C -0.16 -1.43 10.25 30.60 0.31 -1.12 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 2.13 3.28 -2.39 -0.01 2.12 16 31 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.41 16.76 8.01 -92.71 -0.74 16.01 16 34 H 0.43 12.20 8.03 -92.71 -0.74 11.45 16 35 H 0.13 3.75 6.19 -2.91 -0.02 3.73 16 36 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 38 H 0.16 1.46 6.30 -2.91 -0.02 1.45 16 39 H 0.08 0.88 7.65 -2.39 -0.02 0.86 16 40 H 0.08 0.82 7.41 -2.39 -0.02 0.81 16 41 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.11 0.97 8.03 -2.39 -0.02 0.95 16 43 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -68.78 375.38 1.56 -67.21 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -0.52 Total: 35.14 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 4.96 Total: 9.60 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -3.54 Total: -106.64 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -1.00 Total: -50.86 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.67 Total: 45.55 kcal Total: -68.78 1.56 -67.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123154518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.920 kcal (2) G-P(sol) polarization free energy of solvation -68.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds