Wall clock time and date at job start Tue Mar 31 2020 16:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47380 * 2 1 4 4 O 1.21250 * 119.99748 * 0.02562 * 3 2 1 5 5 C 1.47181 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.39898 * 120.13836 * 359.72491 * 5 3 2 7 7 C 1.37923 * 119.97923 * 179.71961 * 6 5 3 8 8 C 1.38285 * 120.25599 * 0.58395 * 7 6 5 9 9 C 1.39050 * 120.27349 * 359.69341 * 8 7 6 10 10 N 1.39760 * 119.98960 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99982 * 215.13554 * 10 9 8 12 12 O 1.21378 * 119.99687 * 5.00182 * 11 10 9 13 13 C 1.49351 * 120.00184 * 185.00169 * 11 10 9 14 14 O 1.21366 * 119.99966 * 354.44060 * 13 11 10 15 15 N 1.34770 * 120.00247 * 174.43881 * 13 11 10 16 16 C 1.46500 * 120.00252 * 174.62673 * 15 13 11 17 17 C 1.53000 * 109.47099 * 94.46870 * 16 15 13 18 18 C 1.46501 * 120.00123 * 354.63632 * 15 13 11 19 19 C 1.50693 * 109.47336 * 84.95751 * 18 15 13 20 20 H 1.08001 * 120.00212 * 359.97438 * 19 18 15 21 21 C 1.37884 * 120.00037 * 180.02562 * 19 18 15 22 22 N 1.31510 * 119.99875 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99841 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46742 * 90.00054 * 23 21 19 25 25 H 1.48497 * 109.47149 * 210.00343 * 23 21 19 26 26 H 1.48503 * 109.46980 * 330.00428 * 23 21 19 27 27 C 1.38623 * 120.01676 * 0.02562 * 9 8 7 28 28 H 1.08996 * 109.46886 * 299.99648 * 1 2 3 29 29 H 1.08994 * 109.46690 * 59.99738 * 1 2 3 30 30 H 1.08997 * 109.46621 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47048 * 120.00188 * 2 1 3 32 32 H 1.09004 * 109.47294 * 239.99857 * 2 1 3 33 33 H 1.07995 * 120.01009 * 359.97438 * 6 5 3 34 34 H 1.07995 * 119.87289 * 180.29745 * 7 6 5 35 35 H 1.07997 * 119.86509 * 179.71916 * 8 7 6 36 36 H 0.97003 * 119.99975 * 35.13805 * 10 9 8 37 37 H 1.08997 * 109.47768 * 214.47064 * 16 15 13 38 38 H 1.09006 * 109.47401 * 334.46900 * 16 15 13 39 39 H 1.09002 * 109.46818 * 299.99965 * 17 16 15 40 40 H 1.08992 * 109.47164 * 59.99848 * 17 16 15 41 41 H 1.08996 * 109.47329 * 180.02562 * 17 16 15 42 42 H 1.08997 * 109.47350 * 204.96259 * 18 15 13 43 43 H 1.09002 * 109.46379 * 324.95584 * 18 15 13 44 44 H 0.97001 * 119.99447 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.13027 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2445 2.3424 0.0005 5 6 3.4795 1.6897 0.0006 6 6 4.3911 0.6285 0.0069 7 6 5.7464 0.8842 0.0016 8 6 6.2096 2.1871 0.0021 9 6 5.3130 3.2499 0.0017 10 7 5.7877 4.5644 0.0017 11 6 5.1185 5.5225 0.6730 12 8 4.1559 5.2285 1.3514 13 6 5.5614 6.9460 0.5823 14 8 6.5812 7.2275 -0.0126 15 7 4.8288 7.9179 1.1609 16 6 5.3217 9.2974 1.1741 17 6 4.7403 10.0582 -0.0193 18 6 3.5394 7.5950 1.7770 19 6 3.7625 7.1204 3.1897 20 1 4.7645 7.0645 3.5888 21 6 2.6874 6.7566 3.9727 22 7 2.8821 6.3429 5.2057 23 14 0.9543 6.8526 3.2823 24 1 0.6056 5.5604 2.6388 25 1 -0.0024 7.1314 4.3833 26 1 0.8820 7.9421 2.2758 27 6 3.9484 3.0059 0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 4.0337 -0.3906 0.0118 34 1 6.4486 0.0637 0.0016 35 1 7.2722 2.3801 0.0025 36 1 6.5988 4.7872 -0.4815 37 1 5.0147 9.7843 2.0997 38 1 6.4098 9.2952 1.1083 39 1 5.0474 9.5714 -0.9450 40 1 3.6523 10.0605 0.0464 41 1 5.1074 11.0844 -0.0098 42 1 2.9089 8.4840 1.7876 43 1 3.0492 6.8088 1.2027 44 1 2.1257 6.0873 5.7566 45 1 3.2503 3.8300 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124111204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:20 Heat of formation + Delta-G solvation = -63.216059 kcal Electronic energy + Delta-G solvation = -28888.172159 eV Core-core repulsion = 24871.714560 eV Total energy + Delta-G solvation = -4016.457599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.76593 -39.83576 -38.71197 -37.54174 -35.86902 -34.41028 -32.96432 -32.56096 -31.20435 -30.71045 -29.77312 -27.71021 -25.71488 -25.05690 -23.00724 -22.73326 -22.57719 -21.26296 -19.60190 -19.23052 -17.66308 -17.08856 -16.95436 -16.42764 -15.99252 -15.72459 -15.50540 -15.34715 -15.12815 -14.78099 -14.32679 -13.95714 -13.92469 -13.61794 -13.46865 -13.25964 -13.16957 -12.52481 -12.43951 -12.39415 -12.20156 -12.11133 -11.88693 -11.85699 -11.76096 -11.45817 -11.28390 -11.02252 -10.74634 -10.65960 -10.46627 -10.20364 -10.16413 -9.67077 -9.50209 -9.04353 -8.76109 -8.49559 -8.14378 -7.94288 -6.03327 -4.00283 0.64960 1.26707 2.01548 2.45143 2.75758 3.35682 3.39611 3.47550 3.64324 3.84316 3.91232 4.04862 4.46818 4.72786 4.82303 4.87636 4.96300 4.98307 5.01996 5.18755 5.30764 5.37779 5.43612 5.45098 5.58655 5.62043 5.70129 5.70623 5.80473 5.83334 6.07918 6.09080 6.17877 6.21717 6.27306 6.31905 6.42749 6.44987 6.46348 6.82264 6.97002 7.10611 7.39746 7.58452 7.59033 7.85502 8.17998 8.46687 8.58029 8.96491 9.57337 11.10074 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.004619 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.106182 B = 6060.341171 C = 7831.339081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 C 0.390 3.610 4 O -0.441 6.441 5 C -0.151 4.151 6 C -0.096 4.096 7 C -0.113 4.113 8 C -0.117 4.117 9 C 0.150 3.850 10 N -0.664 5.664 11 C 0.487 3.513 12 O -0.428 6.428 13 C 0.511 3.489 14 O -0.556 6.556 15 N -0.554 5.554 16 C 0.111 3.889 17 C -0.165 4.165 18 C 0.201 3.799 19 C -0.513 4.513 20 H 0.072 0.928 21 C 0.082 3.918 22 N -0.897 5.897 23 Si 0.869 3.131 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.267 1.267 27 C -0.063 4.063 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.418 0.582 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.051 0.949 44 H 0.263 0.737 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -10.753 -13.447 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C 0.267 3.733 4 O -0.315 6.315 5 C -0.153 4.153 6 C -0.115 4.115 7 C -0.132 4.132 8 C -0.138 4.138 9 C 0.055 3.945 10 N -0.313 5.313 11 C 0.268 3.732 12 O -0.295 6.295 13 C 0.294 3.706 14 O -0.437 6.437 15 N -0.284 5.284 16 C -0.012 4.012 17 C -0.223 4.223 18 C 0.081 3.919 19 C -0.551 4.551 20 H 0.090 0.910 21 C -0.121 4.121 22 N -0.536 5.536 23 Si 0.696 3.304 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.192 1.192 27 C -0.083 4.083 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.255 0.745 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.796 -10.250 -13.035 16.816 hybrid contribution -0.384 0.007 -0.201 0.433 sum 2.412 -10.243 -13.235 16.909 Atomic orbital electron populations 1.21605 0.93712 1.01636 1.03316 1.21965 0.98307 0.95682 1.04476 1.22530 0.87818 0.91277 0.71701 1.90574 1.58193 1.47742 1.35012 1.20367 0.95096 0.93676 1.06136 1.21324 0.92934 0.98349 0.98888 1.20858 0.95433 0.96033 1.00828 1.21175 0.99461 0.91888 1.01228 1.17620 0.92597 0.83994 1.00246 1.43250 1.29915 1.05792 1.52354 1.20464 0.84779 0.87182 0.80760 1.91021 1.23812 1.81623 1.33008 1.19682 0.84262 0.86170 0.80517 1.90659 1.25694 1.83561 1.43741 1.47949 1.21602 1.06721 1.52084 1.21477 0.99748 0.80900 0.99076 1.22118 1.01540 0.99864 0.98767 1.20255 0.79476 0.96842 0.95339 1.21031 0.95498 1.44206 0.94353 0.90998 1.24704 0.98702 0.94153 0.94534 1.69883 1.31243 1.44566 1.07880 0.86959 0.85017 0.79485 0.78907 1.19431 1.21281 1.19238 1.21466 0.94525 0.97178 0.95177 0.91926 0.92150 0.92113 0.88295 0.88428 0.85146 0.85077 0.85116 0.74500 0.89590 0.90206 0.92602 0.92393 0.91781 0.95030 0.93162 0.92690 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.20 37.16 0.34 -1.12 16 2 C -0.17 -1.59 5.03 -27.88 -0.14 -1.73 16 3 C 0.39 5.63 7.12 -30.68 -0.22 5.41 16 4 O -0.44 -8.29 15.97 5.58 0.09 -8.20 16 5 C -0.15 -2.16 5.87 -105.09 -0.62 -2.78 16 6 C -0.10 -1.01 9.47 -39.08 -0.37 -1.38 16 7 C -0.11 -1.12 10.02 -39.68 -0.40 -1.52 16 8 C -0.12 -1.37 9.96 -39.26 -0.39 -1.76 16 9 C 0.15 2.30 6.24 -83.80 -0.52 1.78 16 10 N -0.66 -10.67 5.32 -10.33 -0.05 -10.72 16 11 C 0.49 9.88 7.42 -11.63 -0.09 9.80 16 12 O -0.43 -10.27 9.95 5.47 0.05 -10.22 16 13 C 0.51 10.50 7.68 -11.63 -0.09 10.42 16 14 O -0.56 -11.18 16.05 5.48 0.09 -11.10 16 15 N -0.55 -11.60 2.47 -175.61 -0.43 -12.03 16 16 C 0.11 1.91 6.12 -4.04 -0.02 1.89 16 17 C -0.16 -2.38 10.24 37.16 0.38 -2.00 16 18 C 0.20 4.80 3.84 -5.20 -0.02 4.78 16 19 C -0.51 -14.46 8.29 -34.44 -0.29 -14.75 16 20 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 21 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 22 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 23 Si 0.87 22.25 27.47 -169.99 -4.67 17.58 16 24 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 27 C -0.06 -1.08 8.20 -38.88 -0.32 -1.40 16 28 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.13 0.92 7.04 -52.49 -0.37 0.55 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.42 5.60 8.30 -40.82 -0.34 5.26 16 37 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 38 H 0.08 1.34 7.37 -51.93 -0.38 0.96 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.73 7.09 -51.93 -0.37 0.36 16 43 H 0.05 1.26 5.35 -51.93 -0.28 0.98 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.15 2.93 6.13 -52.49 -0.32 2.61 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -35.62 378.89 -7.59 -43.20 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.29 Total: 4.98 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -2.86 Total: 7.93 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.29 Total: -49.89 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: 0.23 Total: -29.51 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.62 -7.59 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124111204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.015 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds