Wall clock time and date at job start Tue Mar 31 2020 16:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47380 * 2 1 4 4 O 1.21250 * 119.99748 * 0.02562 * 3 2 1 5 5 C 1.47181 * 120.00020 * 179.97438 * 3 2 1 6 6 C 1.39898 * 120.13836 * 359.72491 * 5 3 2 7 7 C 1.37923 * 119.97923 * 179.71961 * 6 5 3 8 8 C 1.38285 * 120.25599 * 0.58395 * 7 6 5 9 9 C 1.39050 * 120.27349 * 359.69341 * 8 7 6 10 10 N 1.39760 * 119.98960 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99982 * 215.13554 * 10 9 8 12 12 O 1.21378 * 119.99687 * 5.00182 * 11 10 9 13 13 C 1.49351 * 120.00184 * 185.00169 * 11 10 9 14 14 O 1.21366 * 119.99966 * 354.44060 * 13 11 10 15 15 N 1.34770 * 120.00247 * 174.43881 * 13 11 10 16 16 C 1.46500 * 120.00252 * 174.62673 * 15 13 11 17 17 C 1.53000 * 109.47099 * 94.46870 * 16 15 13 18 18 C 1.46501 * 120.00123 * 354.63632 * 15 13 11 19 19 C 1.50693 * 109.47336 * 84.95751 * 18 15 13 20 20 H 1.08001 * 120.00212 * 359.97438 * 19 18 15 21 21 C 1.37884 * 120.00037 * 180.02562 * 19 18 15 22 22 N 1.31510 * 119.99875 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99841 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46742 * 90.00054 * 23 21 19 25 25 H 1.48497 * 109.47149 * 210.00343 * 23 21 19 26 26 H 1.48503 * 109.46980 * 330.00428 * 23 21 19 27 27 C 1.38623 * 120.01676 * 0.02562 * 9 8 7 28 28 H 1.08996 * 109.46886 * 299.99648 * 1 2 3 29 29 H 1.08994 * 109.46690 * 59.99738 * 1 2 3 30 30 H 1.08997 * 109.46621 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47048 * 120.00188 * 2 1 3 32 32 H 1.09004 * 109.47294 * 239.99857 * 2 1 3 33 33 H 1.07995 * 120.01009 * 359.97438 * 6 5 3 34 34 H 1.07995 * 119.87289 * 180.29745 * 7 6 5 35 35 H 1.07997 * 119.86509 * 179.71916 * 8 7 6 36 36 H 0.97003 * 119.99975 * 35.13805 * 10 9 8 37 37 H 1.08997 * 109.47768 * 214.47064 * 16 15 13 38 38 H 1.09006 * 109.47401 * 334.46900 * 16 15 13 39 39 H 1.09002 * 109.46818 * 299.99965 * 17 16 15 40 40 H 1.08992 * 109.47164 * 59.99848 * 17 16 15 41 41 H 1.08996 * 109.47329 * 180.02562 * 17 16 15 42 42 H 1.08997 * 109.47350 * 204.96259 * 18 15 13 43 43 H 1.09002 * 109.46379 * 324.95584 * 18 15 13 44 44 H 0.97001 * 119.99447 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.13027 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2445 2.3424 0.0005 5 6 3.4795 1.6897 0.0006 6 6 4.3911 0.6285 0.0069 7 6 5.7464 0.8842 0.0016 8 6 6.2096 2.1871 0.0021 9 6 5.3130 3.2499 0.0017 10 7 5.7877 4.5644 0.0017 11 6 5.1185 5.5225 0.6730 12 8 4.1559 5.2285 1.3514 13 6 5.5614 6.9460 0.5823 14 8 6.5812 7.2275 -0.0126 15 7 4.8288 7.9179 1.1609 16 6 5.3217 9.2974 1.1741 17 6 4.7403 10.0582 -0.0193 18 6 3.5394 7.5950 1.7770 19 6 3.7625 7.1204 3.1897 20 1 4.7645 7.0645 3.5888 21 6 2.6874 6.7566 3.9727 22 7 2.8821 6.3429 5.2057 23 14 0.9543 6.8526 3.2823 24 1 0.6056 5.5604 2.6388 25 1 -0.0024 7.1314 4.3833 26 1 0.8820 7.9421 2.2758 27 6 3.9484 3.0059 0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 4.0337 -0.3906 0.0118 34 1 6.4486 0.0637 0.0016 35 1 7.2722 2.3801 0.0025 36 1 6.5988 4.7872 -0.4815 37 1 5.0147 9.7843 2.0997 38 1 6.4098 9.2952 1.1083 39 1 5.0474 9.5714 -0.9450 40 1 3.6523 10.0605 0.0464 41 1 5.1074 11.0844 -0.0098 42 1 2.9089 8.4840 1.7876 43 1 3.0492 6.8088 1.2027 44 1 2.1257 6.0873 5.7566 45 1 3.2503 3.8300 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124111204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:19 Heat of formation + Delta-G solvation = -88.054980 kcal Electronic energy + Delta-G solvation = -28889.249255 eV Core-core repulsion = 24871.714560 eV Total energy + Delta-G solvation = -4017.534695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20040 -41.07580 -40.07140 -38.89543 -37.49331 -35.78081 -34.70915 -33.86615 -32.28853 -32.16916 -30.91912 -29.66646 -26.81893 -26.36772 -24.68706 -24.13576 -23.67173 -22.53654 -20.83876 -20.59278 -19.18594 -18.96567 -18.51503 -17.87882 -17.21692 -16.96980 -16.72190 -16.61926 -16.46571 -16.32073 -15.85360 -15.47695 -15.28603 -14.91347 -14.78657 -14.58269 -14.42846 -14.34283 -13.96074 -13.68263 -13.50155 -13.29195 -13.16983 -12.95469 -12.81572 -12.72670 -12.66172 -12.45166 -12.25082 -12.14861 -12.05141 -11.92617 -11.72409 -11.49706 -10.80783 -10.75038 -10.42433 -9.99545 -9.72108 -9.27138 -8.31852 -6.31106 -0.38568 0.05983 0.59552 1.24307 1.31146 1.36551 1.36883 1.42234 2.13006 2.30029 2.44881 2.80724 2.97039 3.06419 3.32062 3.84747 3.95340 4.08178 4.09886 4.17807 4.26090 4.28137 4.28680 4.41892 4.43599 4.48433 4.62426 4.73248 4.82184 4.86677 4.92669 4.95588 4.96208 5.03167 5.20315 5.24057 5.26696 5.28589 5.34260 5.37579 5.41921 5.47103 5.90233 5.98989 6.05606 6.31578 6.54698 6.64045 6.69919 6.97104 7.29451 8.85386 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.004619 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.106182 B = 6060.341171 C = 7831.339081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.158 4.158 3 C 0.383 3.617 4 O -0.506 6.506 5 C -0.176 4.176 6 C -0.071 4.071 7 C -0.102 4.102 8 C -0.105 4.105 9 C 0.116 3.884 10 N -0.644 5.644 11 C 0.483 3.517 12 O -0.478 6.478 13 C 0.508 3.492 14 O -0.551 6.551 15 N -0.562 5.562 16 C 0.102 3.898 17 C -0.154 4.154 18 C 0.215 3.785 19 C -0.500 4.500 20 H 0.030 0.970 21 C 0.026 3.974 22 N -0.944 5.944 23 Si 0.928 3.072 24 H -0.291 1.291 25 H -0.276 1.276 26 H -0.236 1.236 27 C -0.099 4.099 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.139 0.861 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.161 0.839 36 H 0.430 0.570 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.264 0.736 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.907 -13.204 -15.295 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.264 3.736 4 O -0.384 6.384 5 C -0.177 4.177 6 C -0.089 4.089 7 C -0.120 4.120 8 C -0.125 4.125 9 C 0.022 3.978 10 N -0.294 5.294 11 C 0.264 3.736 12 O -0.348 6.348 13 C 0.290 3.710 14 O -0.432 6.432 15 N -0.292 5.292 16 C -0.019 4.019 17 C -0.212 4.212 18 C 0.093 3.907 19 C -0.539 4.539 20 H 0.048 0.952 21 C -0.172 4.172 22 N -0.585 5.585 23 Si 0.753 3.247 24 H -0.218 1.218 25 H -0.201 1.201 26 H -0.159 1.159 27 C -0.120 4.120 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.197 0.803 34 H 0.199 0.801 35 H 0.178 0.822 36 H 0.269 0.731 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.199 -12.700 -14.937 20.051 hybrid contribution -0.603 0.623 0.316 0.923 sum 3.596 -12.077 -14.621 19.301 Atomic orbital electron populations 1.21636 0.94522 1.03015 1.01326 1.22073 0.97606 0.92269 1.07473 1.23479 0.87732 0.93062 0.69367 1.90554 1.59507 1.50039 1.38310 1.20631 0.96045 0.93623 1.07442 1.21882 0.92627 0.99229 0.95209 1.21492 0.96021 0.96350 0.98092 1.21612 1.00302 0.91648 0.98913 1.17894 0.92685 0.84212 1.02991 1.43052 1.29479 1.05884 1.51022 1.20575 0.84501 0.87800 0.80696 1.91004 1.25942 1.82253 1.35631 1.19822 0.84254 0.86415 0.80461 1.90640 1.25294 1.83639 1.43600 1.47996 1.20866 1.08368 1.51987 1.21760 1.00172 0.79323 1.00642 1.22047 1.01262 1.01092 0.96827 1.19892 0.81199 0.96854 0.92734 1.21154 0.93386 1.43057 0.96273 0.95204 1.25472 1.02745 0.94197 0.94770 1.70013 1.32411 1.46716 1.09404 0.86015 0.80388 0.79284 0.79012 1.21763 1.20119 1.15934 1.21311 0.94842 0.97533 0.98265 0.94702 0.93575 0.88817 0.85545 0.84354 0.80319 0.80066 0.82165 0.73072 0.89564 0.89771 0.93092 0.92596 0.88510 0.93377 0.94098 0.92655 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.20 71.98 0.66 -2.18 16 2 C -0.16 -2.59 5.03 29.85 0.15 -2.44 16 3 C 0.38 11.26 7.12 28.04 0.20 11.46 16 4 O -0.51 -20.72 15.97 -2.94 -0.05 -20.77 16 5 C -0.18 -4.99 5.87 -20.17 -0.12 -5.11 16 6 C -0.07 -1.20 9.47 22.60 0.21 -0.99 16 7 C -0.10 -1.50 10.02 22.21 0.22 -1.28 16 8 C -0.10 -2.16 9.96 22.48 0.22 -1.93 16 9 C 0.12 3.59 6.24 38.16 0.24 3.83 16 10 N -0.64 -21.40 5.32 -304.95 -1.62 -23.03 16 11 C 0.48 20.73 7.42 87.24 0.65 21.37 16 12 O -0.48 -24.72 9.95 -3.33 -0.03 -24.75 16 13 C 0.51 21.49 7.68 87.24 0.67 22.16 16 14 O -0.55 -22.21 16.05 -3.30 -0.05 -22.27 16 15 N -0.56 -24.09 2.47 -827.86 -2.04 -26.14 16 16 C 0.10 3.50 6.12 86.38 0.53 4.03 16 17 C -0.15 -4.21 10.24 71.98 0.74 -3.47 16 18 C 0.21 10.56 3.84 85.63 0.33 10.89 16 19 C -0.50 -29.53 8.29 25.60 0.21 -29.32 16 20 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 21 C 0.03 1.59 5.47 84.66 0.46 2.05 16 22 N -0.94 -61.34 13.96 21.45 0.30 -61.04 16 23 Si 0.93 47.62 27.47 68.60 1.88 49.51 16 24 H -0.29 -15.93 7.11 99.48 0.71 -15.22 16 25 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 26 H -0.24 -10.81 6.54 99.48 0.65 -10.16 16 27 C -0.10 -3.61 8.20 22.72 0.19 -3.42 16 28 H 0.03 0.84 8.10 -2.39 -0.02 0.82 16 29 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.13 1.45 8.08 -2.39 -0.02 1.44 16 32 H 0.14 1.20 8.09 -2.38 -0.02 1.18 16 33 H 0.18 1.28 7.04 -2.91 -0.02 1.26 16 34 H 0.18 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.43 11.52 8.30 -92.71 -0.77 10.75 16 37 H 0.09 2.92 8.11 -2.39 -0.02 2.90 16 38 H 0.08 2.79 7.37 -2.38 -0.02 2.77 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 2.21 7.09 -2.39 -0.02 2.20 16 43 H 0.04 2.14 5.35 -2.39 -0.01 2.13 16 44 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 45 H 0.10 4.40 6.13 -2.91 -0.02 4.38 16 Total: -1.00 -87.65 378.89 4.14 -83.51 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.19 Total: 19.31 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: 5.56 Total: 25.67 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -3.37 Total: -110.20 kcal Atomic # 8 Polarization: -67.66 SS G_CDS: -0.13 Total: -67.79 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.88 Total: 49.51 kcal Total: -87.65 4.14 -83.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124111204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.544 kcal (2) G-P(sol) polarization free energy of solvation -87.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds