Wall clock time and date at job start Tue Mar 31 2020 16:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50705 * 109.46970 * 2 1 4 4 O 1.21275 * 120.00170 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99771 * 180.02562 * 3 2 1 6 6 C 1.47429 * 125.64770 * 0.04203 * 5 3 2 7 7 C 1.55119 * 104.93920 * 203.97072 * 6 5 3 8 8 C 1.55163 * 101.48665 * 323.21985 * 7 6 5 9 9 H 1.09000 * 110.71702 * 276.83563 * 8 7 6 10 10 N 1.46494 * 110.71969 * 153.73918 * 8 7 6 11 11 C 1.34771 * 120.00195 * 88.84623 * 10 8 7 12 12 O 1.21589 * 120.00078 * 359.97438 * 11 10 8 13 13 C 1.47535 * 120.00005 * 179.97438 * 11 10 8 14 14 C 1.39664 * 120.19988 * 359.97438 * 13 11 10 15 15 C 1.37828 * 119.92228 * 179.97438 * 14 13 11 16 16 C 1.38567 * 120.32089 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.40549 * 359.95079 * 16 15 14 18 18 C 1.38838 * 120.07103 * 0.04907 * 17 16 15 19 19 O 1.35519 * 120.15882 * 179.97438 * 18 17 16 20 20 C 1.34818 * 117.00264 * 354.39966 * 19 18 17 21 21 H 1.08001 * 119.99468 * 5.06559 * 20 19 18 22 22 C 1.38692 * 119.99752 * 185.06414 * 20 19 18 23 23 N 1.31518 * 120.00330 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99843 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46703 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47147 * 119.99805 * 24 22 20 27 27 H 1.48495 * 109.46895 * 239.99740 * 24 22 20 28 28 C 1.47019 * 125.64752 * 179.97438 * 5 3 2 29 29 H 1.08998 * 109.47006 * 299.99933 * 1 2 3 30 30 H 1.08994 * 109.47186 * 60.00183 * 1 2 3 31 31 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47006 * 240.00067 * 2 1 3 33 33 H 1.09004 * 109.47148 * 119.99990 * 2 1 3 34 34 H 1.09002 * 110.36423 * 322.93174 * 6 5 3 35 35 H 1.08999 * 110.36940 * 85.25103 * 6 5 3 36 36 H 1.09001 * 111.16107 * 205.13099 * 7 6 5 37 37 H 1.09000 * 110.94349 * 81.21701 * 7 6 5 38 38 H 0.97005 * 119.99694 * 268.84328 * 10 8 7 39 39 H 1.08001 * 120.03956 * 359.69915 * 14 13 11 40 40 H 1.08004 * 119.83701 * 179.97438 * 15 14 13 41 41 H 1.08006 * 119.79757 * 179.97438 * 16 15 14 42 42 H 1.07999 * 119.96299 * 180.02562 * 17 16 15 43 43 H 0.96996 * 120.00218 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.88172 * 59.55840 * 28 5 3 45 45 H 1.08997 * 109.88022 * 298.39186 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.4211 0.6463 -0.0020 7 6 5.6583 1.3569 0.6068 8 6 5.5101 2.7877 0.0251 9 1 5.9235 2.8391 -0.9822 10 7 6.1544 3.7716 0.8986 11 6 7.4571 4.0723 0.7292 12 8 8.0979 3.5267 -0.1483 13 6 8.1058 5.0636 1.6085 14 6 7.3736 5.6933 2.6175 15 6 7.9854 6.6181 3.4360 16 6 9.3249 6.9276 3.2630 17 6 10.0613 6.3131 2.2705 18 6 9.4617 5.3790 1.4365 19 8 10.1829 4.7749 0.4611 20 6 11.4462 5.2081 0.2765 21 1 11.8676 5.9445 0.9447 22 6 12.2045 4.7079 -0.7716 23 7 11.6915 3.8108 -1.5850 24 14 13.9547 5.3087 -1.0279 25 1 14.2915 6.3112 0.0146 26 1 14.8913 4.1604 -0.9320 27 1 14.0722 5.9325 -2.3704 28 6 3.9816 2.9983 -0.0011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.1305 -0.2052 0.6134 35 1 4.6357 0.3234 -1.0207 36 1 6.5847 0.8920 0.2695 37 1 5.6035 1.3701 1.6954 38 1 5.6432 4.2067 1.5989 39 1 6.3280 5.4591 2.7533 40 1 7.4177 7.1046 4.2156 41 1 9.7958 7.6539 3.9090 42 1 11.1050 6.5594 2.1423 43 1 12.2220 3.4607 -2.3177 44 1 3.6690 3.5546 0.8825 45 1 3.6973 3.5405 -0.9029 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125247688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:45 Heat of formation + Delta-G solvation = -90.732219 kcal Electronic energy + Delta-G solvation = -27980.068926 eV Core-core repulsion = 23962.418137 eV Total energy + Delta-G solvation = -4017.650789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.54303 -40.99816 -39.89006 -38.43933 -37.99336 -35.28815 -34.31386 -33.72448 -32.48385 -31.23440 -30.56449 -29.68149 -27.37704 -25.97633 -24.59679 -23.75987 -23.21459 -22.04983 -21.55272 -20.15652 -19.84153 -19.29153 -18.29052 -18.01992 -17.52340 -16.78334 -16.50068 -16.32208 -16.09844 -15.94787 -15.74775 -15.48869 -15.19716 -15.15810 -14.66051 -14.38863 -14.30022 -14.15142 -13.86584 -13.54722 -13.43129 -13.16203 -13.07720 -12.94248 -12.68785 -12.66937 -12.56085 -12.53425 -12.32304 -12.09827 -12.06541 -11.92472 -11.42106 -10.97411 -10.83723 -10.63418 -10.14155 -9.81631 -9.75084 -9.03521 -8.44308 -6.14655 0.12046 0.72752 1.33228 1.43295 1.52459 1.57468 1.73703 2.08238 2.15904 2.34865 2.87829 3.20772 3.28913 3.46620 3.52791 3.77483 3.93720 3.99507 4.07872 4.12827 4.20543 4.23552 4.27413 4.29357 4.50517 4.52613 4.61777 4.65774 4.74805 4.78265 4.94712 4.97552 5.01488 5.05205 5.07362 5.08396 5.13402 5.17193 5.36968 5.47838 5.53002 5.61162 5.70079 5.96859 6.16582 6.42050 6.64233 6.95526 7.08275 7.45685 7.80403 8.76186 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.002643 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.057201 B =10591.359828 C =12003.594558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.520 3.480 4 O -0.588 6.588 5 N -0.618 5.618 6 C 0.106 3.894 7 C -0.141 4.141 8 C 0.137 3.863 9 H 0.076 0.924 10 N -0.710 5.710 11 C 0.555 3.445 12 O -0.561 6.561 13 C -0.244 4.244 14 C -0.030 4.030 15 C -0.202 4.202 16 C -0.040 4.040 17 C -0.258 4.258 18 C 0.150 3.850 19 O -0.186 6.186 20 C -0.426 4.426 21 H 0.106 0.894 22 C -0.021 4.021 23 N -0.903 5.903 24 Si 1.020 2.980 25 H -0.247 1.247 26 H -0.268 1.268 27 H -0.270 1.270 28 C 0.111 3.889 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.411 0.589 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.081 0.919 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.387 -5.171 9.049 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.311 3.689 4 O -0.469 6.469 5 N -0.352 5.352 6 C -0.016 4.016 7 C -0.181 4.181 8 C 0.031 3.969 9 H 0.094 0.906 10 N -0.366 5.366 11 C 0.345 3.655 12 O -0.439 6.439 13 C -0.249 4.249 14 C -0.048 4.048 15 C -0.220 4.220 16 C -0.058 4.058 17 C -0.277 4.277 18 C 0.095 3.905 19 O -0.089 6.089 20 C -0.502 4.502 21 H 0.123 0.877 22 C -0.220 4.220 23 N -0.539 5.539 24 Si 0.839 3.161 25 H -0.170 1.170 26 H -0.193 1.193 27 H -0.195 1.195 28 C -0.013 4.013 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.249 0.751 39 H 0.176 0.824 40 H 0.180 0.820 41 H 0.170 0.830 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.426 -5.418 8.050 19.078 hybrid contribution 1.012 0.557 -0.362 1.210 sum -15.414 -4.861 7.688 17.898 Atomic orbital electron populations 1.21551 0.93267 1.02779 1.01881 1.21709 0.98151 0.90758 1.06622 1.21318 0.79660 0.93322 0.74574 1.90689 1.55422 1.48511 1.52240 1.48585 1.05712 1.07832 1.73107 1.22543 0.84807 0.91524 1.02687 1.23217 0.98581 0.94376 1.01891 1.21777 0.91095 0.89109 0.94942 0.90575 1.45562 1.09679 1.44461 1.36886 1.18430 0.81996 0.81718 0.83375 1.90936 1.64386 1.53579 1.34997 1.19255 0.92153 1.08035 1.05438 1.21296 0.99450 0.93158 0.90930 1.21166 0.95142 1.02295 1.03422 1.21425 0.94467 0.95894 0.94041 1.21303 1.01766 1.03469 1.01180 1.20069 0.91214 0.90701 0.88537 1.84170 1.25199 1.53171 1.46327 1.22050 0.87231 1.25873 1.15040 0.87685 1.26706 1.05091 0.96065 0.94171 1.70310 1.39092 1.28304 1.16192 0.84527 0.73877 0.78582 0.79130 1.16977 1.19307 1.19518 1.21899 0.90430 0.86111 1.02869 0.93380 0.93667 0.89400 0.86676 0.86221 0.86581 0.89778 0.90567 0.89219 0.75052 0.82378 0.82037 0.82988 0.85948 0.92029 0.90073 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.20 71.98 0.66 -1.14 16 2 C -0.13 -1.57 5.43 29.85 0.16 -1.41 16 3 C 0.52 11.02 7.85 87.66 0.69 11.71 16 4 O -0.59 -17.69 16.31 -3.02 -0.05 -17.74 16 5 N -0.62 -12.18 3.33 -811.38 -2.70 -14.88 16 6 C 0.11 1.60 6.69 86.93 0.58 2.19 16 7 C -0.14 -3.09 6.79 32.06 0.22 -2.87 16 8 C 0.14 3.67 3.27 46.18 0.15 3.82 16 9 H 0.08 2.54 7.62 -2.39 -0.02 2.52 16 10 N -0.71 -21.07 5.14 -440.08 -2.26 -23.33 16 11 C 0.55 23.92 7.76 86.70 0.67 24.59 16 12 O -0.56 -31.45 14.85 16.90 0.25 -31.20 16 13 C -0.24 -10.26 5.89 -19.99 -0.12 -10.37 16 14 C -0.03 -0.88 9.53 22.52 0.21 -0.66 16 15 C -0.20 -5.30 10.02 22.25 0.22 -5.07 16 16 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 17 C -0.26 -10.85 9.16 22.36 0.20 -10.65 16 18 C 0.15 7.57 6.66 22.91 0.15 7.72 16 19 O -0.19 -11.60 7.84 0.81 0.01 -11.60 16 20 C -0.43 -25.39 9.49 67.93 0.64 -24.74 16 21 H 0.11 5.64 5.21 -2.91 -0.02 5.62 16 22 C -0.02 -1.23 5.49 84.85 0.47 -0.76 16 23 N -0.90 -58.02 13.67 21.62 0.30 -57.72 16 24 Si 1.02 43.68 29.55 68.60 2.03 45.71 16 25 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 C 0.11 2.51 6.62 86.73 0.57 3.08 16 29 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 30 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 0.82 7.85 -2.38 -0.02 0.80 16 34 H 0.12 0.99 7.48 -2.39 -0.02 0.97 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.41 9.01 6.37 -92.70 -0.59 8.42 16 39 H 0.16 3.10 6.40 -2.91 -0.02 3.08 16 40 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 43 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.08 1.71 7.70 -2.39 -0.02 1.69 16 45 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -90.53 375.64 3.72 -86.81 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.43 Total: 29.53 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 5.72 Total: -5.58 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -4.67 Total: -95.94 kcal Atomic # 8 Polarization: -60.74 SS G_CDS: 0.21 Total: -60.53 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -90.53 3.72 -86.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125247688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.926 kcal (2) G-P(sol) polarization free energy of solvation -90.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds