Wall clock time and date at job start Tue Mar 31 2020 16:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50710 * 109.47055 * 2 1 4 4 O 1.21247 * 119.99710 * 359.97438 * 3 2 1 5 5 C 1.47186 * 119.99891 * 180.02562 * 3 2 1 6 6 C 1.39901 * 120.13314 * 359.72099 * 5 3 2 7 7 C 1.37924 * 119.96880 * 179.72096 * 6 5 3 8 8 C 1.38275 * 120.26298 * 0.58182 * 7 6 5 9 9 C 1.39043 * 120.27369 * 359.69612 * 8 7 6 10 10 N 1.39764 * 119.99590 * 180.02562 * 9 8 7 11 11 C 1.34773 * 120.00074 * 209.29239 * 10 9 8 12 12 O 1.21382 * 120.00263 * 5.63354 * 11 10 9 13 13 C 1.49357 * 120.00007 * 185.63180 * 11 10 9 14 14 O 1.21360 * 120.00041 * 0.66552 * 13 11 10 15 15 N 1.34773 * 119.99969 * 180.66258 * 13 11 10 16 16 C 1.46503 * 120.00263 * 354.40149 * 15 13 11 17 17 C 1.46500 * 119.99819 * 174.39503 * 15 13 11 18 18 H 1.08994 * 109.47131 * 0.02562 * 17 15 13 19 19 C 1.53002 * 109.47097 * 120.00405 * 17 15 13 20 20 C 1.50701 * 109.47378 * 240.00163 * 17 15 13 21 21 H 1.08004 * 119.99779 * 0.02562 * 20 17 15 22 22 C 1.37875 * 120.00310 * 180.02562 * 20 17 15 23 23 N 1.31517 * 119.99971 * 180.02562 * 22 20 17 24 24 Si 1.86802 * 120.00038 * 359.97438 * 22 20 17 25 25 H 1.48499 * 109.47143 * 89.99808 * 24 22 20 26 26 H 1.48491 * 109.47202 * 210.00200 * 24 22 20 27 27 H 1.48500 * 109.46932 * 330.00127 * 24 22 20 28 28 C 1.38627 * 120.01743 * 359.97438 * 9 8 7 29 29 H 1.08988 * 109.47272 * 59.99757 * 1 2 3 30 30 H 1.09002 * 109.47129 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46906 * 299.99852 * 1 2 3 32 32 H 1.09002 * 109.47226 * 119.99622 * 2 1 3 33 33 H 1.08993 * 109.47364 * 239.99841 * 2 1 3 34 34 H 1.07995 * 120.01582 * 359.97438 * 6 5 3 35 35 H 1.08005 * 119.86320 * 180.29810 * 7 6 5 36 36 H 1.08003 * 119.86482 * 179.71718 * 8 7 6 37 37 H 0.97001 * 119.99931 * 29.28420 * 10 9 8 38 38 H 1.08996 * 109.47418 * 83.75111 * 16 15 13 39 39 H 1.08996 * 109.46818 * 203.75339 * 16 15 13 40 40 H 1.09000 * 109.46351 * 323.75019 * 16 15 13 41 41 H 1.09001 * 109.47134 * 180.02562 * 19 17 15 42 42 H 1.08998 * 109.46600 * 299.99789 * 19 17 15 43 43 H 1.09001 * 109.47000 * 59.99871 * 19 17 15 44 44 H 0.97005 * 119.99647 * 180.02562 * 23 22 20 45 45 H 1.07996 * 120.13158 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2444 2.3424 -0.0005 5 6 3.4794 1.6899 -0.0006 6 6 4.3910 0.6286 0.0048 7 6 5.7463 0.8845 -0.0016 8 6 6.2095 2.1873 -0.0011 9 6 5.3129 3.2501 -0.0006 10 7 5.7874 4.5647 -0.0007 11 6 5.0591 5.5441 0.5708 12 8 4.0420 5.2708 1.1743 13 6 5.5034 6.9658 0.4615 14 8 6.5138 7.2404 -0.1521 15 7 4.7822 7.9439 1.0444 16 6 3.5000 7.6294 1.6794 17 6 5.2806 9.3215 1.0430 18 1 6.2407 9.3600 0.5286 19 6 4.2791 10.2254 0.3212 20 6 5.4518 9.7953 2.4633 21 1 5.2136 9.1359 3.2849 22 6 5.9125 11.0703 2.7140 23 7 6.0624 11.4835 3.9536 24 14 6.3252 12.2106 1.2930 25 1 5.1178 12.9885 0.9159 26 1 7.4060 13.1422 1.7038 27 1 6.7797 11.4072 0.1297 28 6 3.9482 3.0061 -0.0011 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 4.0336 -0.3905 0.0098 35 1 6.4485 0.0639 -0.0023 36 1 7.2721 2.3803 -0.0015 37 1 6.6411 4.7721 -0.4120 38 1 3.6751 7.2710 2.6937 39 1 2.8815 8.5263 1.7127 40 1 2.9895 6.8571 1.1041 41 1 4.6502 11.2504 0.3198 42 1 4.1554 9.8828 -0.7061 43 1 3.3188 10.1870 0.8353 44 1 6.3862 12.3808 4.1299 45 1 3.2502 3.8301 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132367576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:41 Heat of formation + Delta-G solvation = -57.613899 kcal Electronic energy + Delta-G solvation = -28114.114706 eV Core-core repulsion = 24097.900036 eV Total energy + Delta-G solvation = -4016.214671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.12051 -40.06588 -38.90183 -37.85922 -36.08706 -34.86417 -33.20100 -32.73356 -31.45804 -30.52447 -30.05028 -26.47165 -25.93106 -25.36334 -24.87868 -23.01871 -22.71130 -20.90220 -19.91893 -19.24141 -17.91800 -17.40444 -16.84603 -16.62490 -16.11991 -16.03664 -15.73307 -15.58979 -15.57800 -14.98223 -14.55896 -14.44817 -13.99129 -13.80692 -13.56422 -13.25814 -13.00758 -12.76933 -12.60504 -12.44596 -12.39144 -12.28771 -12.12243 -12.00866 -11.85212 -11.62580 -11.49228 -11.23840 -10.85596 -10.76406 -10.66125 -10.20425 -9.92930 -9.70360 -9.43165 -9.29156 -8.96856 -8.70641 -8.42379 -7.93785 -6.20751 -4.23178 0.37677 0.96577 1.70732 2.20554 2.48539 3.19136 3.32286 3.33512 3.40195 3.59254 3.67320 3.87222 4.28640 4.49068 4.56912 4.63528 4.73368 4.77296 4.78461 4.93438 5.11133 5.12564 5.18151 5.37881 5.48873 5.58196 5.60143 5.85287 5.88689 5.94227 5.98449 6.05647 6.07153 6.12778 6.19204 6.25180 6.34818 6.50740 6.65564 6.74651 6.84135 7.04306 7.12177 7.31997 7.48399 7.70076 7.96908 8.29156 8.47232 8.80989 9.38013 10.91646 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.002618 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.215661 B =10694.345670 C =11475.387891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.168 4.168 3 C 0.392 3.608 4 O -0.443 6.443 5 C -0.152 4.152 6 C -0.095 4.095 7 C -0.110 4.110 8 C -0.116 4.116 9 C 0.143 3.857 10 N -0.652 5.652 11 C 0.508 3.492 12 O -0.490 6.490 13 C 0.498 3.502 14 O -0.537 6.537 15 N -0.545 5.545 16 C 0.080 3.920 17 C 0.227 3.773 18 H 0.066 0.934 19 C -0.163 4.163 20 C -0.532 4.532 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.891 5.891 24 Si 0.883 3.117 25 H -0.275 1.275 26 H -0.293 1.293 27 H -0.263 1.263 28 C -0.070 4.070 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.424 0.576 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.036 0.964 43 H 0.060 0.940 44 H 0.267 0.733 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 -24.532 -10.031 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.269 3.731 4 O -0.317 6.317 5 C -0.154 4.154 6 C -0.114 4.114 7 C -0.129 4.129 8 C -0.137 4.137 9 C 0.048 3.952 10 N -0.299 5.299 11 C 0.291 3.709 12 O -0.363 6.363 13 C 0.279 3.721 14 O -0.416 6.416 15 N -0.275 5.275 16 C -0.062 4.062 17 C 0.126 3.874 18 H 0.084 0.916 19 C -0.221 4.221 20 C -0.570 4.570 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.528 5.528 24 Si 0.712 3.288 25 H -0.202 1.202 26 H -0.220 1.220 27 H -0.187 1.187 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.923 -23.790 -9.766 26.184 hybrid contribution 0.829 0.808 -0.622 1.314 sum -4.095 -22.982 -10.388 25.551 Atomic orbital electron populations 1.21606 0.93586 1.01792 1.03289 1.21976 0.98403 0.95572 1.04573 1.22530 0.87696 0.91321 0.71530 1.90557 1.58193 1.47760 1.35229 1.20399 0.95173 0.93643 1.06156 1.21378 0.92934 0.98505 0.98575 1.20898 0.95517 0.96064 1.00422 1.21178 0.99607 0.91837 1.01065 1.17711 0.92879 0.83810 1.00805 1.43275 1.24684 1.05071 1.56821 1.20846 0.83927 0.87550 0.78535 1.90742 1.23710 1.83435 1.38379 1.19549 0.85078 0.85383 0.82113 1.90715 1.25493 1.83051 1.42319 1.47882 1.20290 1.08739 1.50603 1.22044 0.84268 1.01418 0.98484 1.19518 0.94329 0.75439 0.98115 0.91642 1.22473 1.01218 0.99800 0.98561 1.21104 1.45886 0.99856 0.90191 0.90081 1.24851 0.94455 0.97611 0.95655 1.69870 1.45447 1.18770 1.18681 0.86921 0.77849 0.80993 0.82997 1.20221 1.21988 1.18748 1.21569 0.94426 0.97380 0.95651 0.92071 0.92023 0.91975 0.88280 0.88332 0.84988 0.84851 0.84866 0.73744 0.92232 0.90821 0.90181 0.92784 0.94522 0.92133 0.92271 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.20 37.16 0.34 -0.70 16 2 C -0.17 -1.09 5.03 -27.88 -0.14 -1.23 16 3 C 0.39 4.23 7.12 -30.67 -0.22 4.01 16 4 O -0.44 -6.50 15.97 5.59 0.09 -6.41 16 5 C -0.15 -1.64 5.87 -105.09 -0.62 -2.26 16 6 C -0.09 -0.72 9.47 -39.07 -0.37 -1.09 16 7 C -0.11 -0.80 10.02 -39.68 -0.40 -1.20 16 8 C -0.12 -1.05 9.94 -39.27 -0.39 -1.44 16 9 C 0.14 1.74 6.34 -83.80 -0.53 1.21 16 10 N -0.65 -8.75 5.33 -10.33 -0.06 -8.80 16 11 C 0.51 8.57 7.53 -11.63 -0.09 8.48 16 12 O -0.49 -8.79 10.69 5.47 0.06 -8.73 16 13 C 0.50 9.92 7.72 -11.63 -0.09 9.83 16 14 O -0.54 -11.53 15.83 5.49 0.09 -11.44 16 15 N -0.55 -11.57 2.75 -175.81 -0.48 -12.06 16 16 C 0.08 1.51 8.47 59.85 0.51 2.02 16 17 C 0.23 5.43 2.21 -69.08 -0.15 5.28 16 18 H 0.07 1.69 5.97 -51.93 -0.31 1.38 16 19 C -0.16 -3.47 8.66 37.16 0.32 -3.15 16 20 C -0.53 -14.64 8.95 -34.44 -0.31 -14.95 16 21 H 0.08 2.43 7.89 -52.48 -0.41 2.01 16 22 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 23 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 24 Si 0.88 21.38 24.37 -169.99 -4.14 17.24 16 25 H -0.28 -6.39 6.87 56.52 0.39 -6.01 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 28 C -0.07 -0.94 8.22 -38.88 -0.32 -1.25 16 29 H 0.06 0.49 8.10 -51.94 -0.42 0.07 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.10 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.13 0.57 7.04 -52.49 -0.37 0.20 16 35 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.42 4.93 8.28 -40.82 -0.34 4.59 16 38 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 39 H 0.07 1.33 6.44 -51.93 -0.33 1.00 16 40 H 0.08 1.39 5.84 -51.93 -0.30 1.08 16 41 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.21 6.67 -51.93 -0.35 0.87 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.15 2.41 5.71 -52.49 -0.30 2.11 16 LS Contribution 367.95 15.07 5.55 5.55 Total: -1.00 -33.69 367.95 -6.54 -40.22 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.86 Total: 4.60 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -2.55 Total: 5.65 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.23 Total: -46.67 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: 0.23 Total: -26.58 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.69 -6.54 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132367576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.389 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds