Wall clock time and date at job start Tue Mar 31 2020 16:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50710 * 109.47055 * 2 1 4 4 O 1.21247 * 119.99710 * 359.97438 * 3 2 1 5 5 C 1.47186 * 119.99891 * 180.02562 * 3 2 1 6 6 C 1.39901 * 120.13314 * 359.72099 * 5 3 2 7 7 C 1.37924 * 119.96880 * 179.72096 * 6 5 3 8 8 C 1.38275 * 120.26298 * 0.58182 * 7 6 5 9 9 C 1.39043 * 120.27369 * 359.69612 * 8 7 6 10 10 N 1.39764 * 119.99590 * 180.02562 * 9 8 7 11 11 C 1.34773 * 120.00074 * 209.29239 * 10 9 8 12 12 O 1.21382 * 120.00263 * 5.63354 * 11 10 9 13 13 C 1.49357 * 120.00007 * 185.63180 * 11 10 9 14 14 O 1.21360 * 120.00041 * 0.66552 * 13 11 10 15 15 N 1.34773 * 119.99969 * 180.66258 * 13 11 10 16 16 C 1.46503 * 120.00263 * 354.40149 * 15 13 11 17 17 C 1.46500 * 119.99819 * 174.39503 * 15 13 11 18 18 H 1.08994 * 109.47131 * 0.02562 * 17 15 13 19 19 C 1.53002 * 109.47097 * 120.00405 * 17 15 13 20 20 C 1.50701 * 109.47378 * 240.00163 * 17 15 13 21 21 H 1.08004 * 119.99779 * 0.02562 * 20 17 15 22 22 C 1.37875 * 120.00310 * 180.02562 * 20 17 15 23 23 N 1.31517 * 119.99971 * 180.02562 * 22 20 17 24 24 Si 1.86802 * 120.00038 * 359.97438 * 22 20 17 25 25 H 1.48499 * 109.47143 * 89.99808 * 24 22 20 26 26 H 1.48491 * 109.47202 * 210.00200 * 24 22 20 27 27 H 1.48500 * 109.46932 * 330.00127 * 24 22 20 28 28 C 1.38627 * 120.01743 * 359.97438 * 9 8 7 29 29 H 1.08988 * 109.47272 * 59.99757 * 1 2 3 30 30 H 1.09002 * 109.47129 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46906 * 299.99852 * 1 2 3 32 32 H 1.09002 * 109.47226 * 119.99622 * 2 1 3 33 33 H 1.08993 * 109.47364 * 239.99841 * 2 1 3 34 34 H 1.07995 * 120.01582 * 359.97438 * 6 5 3 35 35 H 1.08005 * 119.86320 * 180.29810 * 7 6 5 36 36 H 1.08003 * 119.86482 * 179.71718 * 8 7 6 37 37 H 0.97001 * 119.99931 * 29.28420 * 10 9 8 38 38 H 1.08996 * 109.47418 * 83.75111 * 16 15 13 39 39 H 1.08996 * 109.46818 * 203.75339 * 16 15 13 40 40 H 1.09000 * 109.46351 * 323.75019 * 16 15 13 41 41 H 1.09001 * 109.47134 * 180.02562 * 19 17 15 42 42 H 1.08998 * 109.46600 * 299.99789 * 19 17 15 43 43 H 1.09001 * 109.47000 * 59.99871 * 19 17 15 44 44 H 0.97005 * 119.99647 * 180.02562 * 23 22 20 45 45 H 1.07996 * 120.13158 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2444 2.3424 -0.0005 5 6 3.4794 1.6899 -0.0006 6 6 4.3910 0.6286 0.0048 7 6 5.7463 0.8845 -0.0016 8 6 6.2095 2.1873 -0.0011 9 6 5.3129 3.2501 -0.0006 10 7 5.7874 4.5647 -0.0007 11 6 5.0591 5.5441 0.5708 12 8 4.0420 5.2708 1.1743 13 6 5.5034 6.9658 0.4615 14 8 6.5138 7.2404 -0.1521 15 7 4.7822 7.9439 1.0444 16 6 3.5000 7.6294 1.6794 17 6 5.2806 9.3215 1.0430 18 1 6.2407 9.3600 0.5286 19 6 4.2791 10.2254 0.3212 20 6 5.4518 9.7953 2.4633 21 1 5.2136 9.1359 3.2849 22 6 5.9125 11.0703 2.7140 23 7 6.0624 11.4835 3.9536 24 14 6.3252 12.2106 1.2930 25 1 5.1178 12.9885 0.9159 26 1 7.4060 13.1422 1.7038 27 1 6.7797 11.4072 0.1297 28 6 3.9482 3.0061 -0.0011 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 4.0336 -0.3905 0.0098 35 1 6.4485 0.0639 -0.0023 36 1 7.2721 2.3803 -0.0015 37 1 6.6411 4.7721 -0.4120 38 1 3.6751 7.2710 2.6937 39 1 2.8815 8.5263 1.7127 40 1 2.9895 6.8571 1.1041 41 1 4.6502 11.2504 0.3198 42 1 4.1554 9.8828 -0.7061 43 1 3.3188 10.1870 0.8353 44 1 6.3862 12.3808 4.1299 45 1 3.2502 3.8301 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132367576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:40 Heat of formation + Delta-G solvation = -81.223838 kcal Electronic energy + Delta-G solvation = -28115.138510 eV Core-core repulsion = 24097.900036 eV Total energy + Delta-G solvation = -4017.238475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.35126 -41.07715 -40.14295 -38.98015 -37.72742 -36.06777 -34.74409 -33.83200 -32.40386 -32.17668 -30.96139 -28.04464 -27.27052 -26.75342 -26.29381 -23.86957 -23.68391 -22.26791 -20.93565 -20.57580 -19.18136 -18.78255 -18.52072 -18.01942 -17.35123 -17.26918 -16.90505 -16.61869 -16.42752 -16.36840 -15.92790 -15.54242 -15.13283 -15.01156 -14.85329 -14.58336 -14.31530 -14.18224 -14.04689 -13.73022 -13.68144 -13.58637 -13.13373 -13.11455 -12.90214 -12.80603 -12.67276 -12.49559 -12.27027 -12.09806 -12.00723 -11.65246 -11.57305 -11.44751 -10.84551 -10.72248 -10.50789 -10.00544 -9.71527 -9.29113 -8.38917 -6.46481 -0.40235 -0.05591 0.55247 1.16335 1.26909 1.35157 1.42150 1.44233 2.00523 2.24887 2.40112 2.79900 2.94358 2.97490 3.18780 3.85636 3.96429 4.07886 4.19726 4.24040 4.27474 4.30453 4.35297 4.39405 4.41291 4.47412 4.56874 4.65841 4.76120 4.88560 4.92721 4.95906 5.00614 5.07605 5.13350 5.19037 5.20175 5.29758 5.32783 5.36448 5.38480 5.48579 5.82173 5.88510 6.09348 6.33562 6.53626 6.56820 6.58989 6.81072 7.19402 8.77152 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.002618 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.215661 B =10694.345670 C =11475.387891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.160 4.160 3 C 0.388 3.612 4 O -0.500 6.500 5 C -0.172 4.172 6 C -0.071 4.071 7 C -0.102 4.102 8 C -0.106 4.106 9 C 0.111 3.889 10 N -0.635 5.635 11 C 0.512 3.488 12 O -0.507 6.507 13 C 0.494 3.506 14 O -0.554 6.554 15 N -0.558 5.558 16 C 0.089 3.911 17 C 0.230 3.770 18 H 0.049 0.951 19 C -0.157 4.157 20 C -0.535 4.535 21 H 0.041 0.959 22 C 0.025 3.975 23 N -0.937 5.937 24 Si 0.944 3.056 25 H -0.253 1.253 26 H -0.293 1.293 27 H -0.254 1.254 28 C -0.100 4.100 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.158 0.842 37 H 0.432 0.568 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.271 0.729 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 -28.030 -11.988 30.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.268 3.732 4 O -0.378 6.378 5 C -0.173 4.173 6 C -0.089 4.089 7 C -0.120 4.120 8 C -0.126 4.126 9 C 0.017 3.983 10 N -0.282 5.282 11 C 0.295 3.705 12 O -0.382 6.382 13 C 0.276 3.724 14 O -0.434 6.434 15 N -0.288 5.288 16 C -0.053 4.053 17 C 0.128 3.872 18 H 0.066 0.934 19 C -0.215 4.215 20 C -0.573 4.573 21 H 0.059 0.941 22 C -0.175 4.175 23 N -0.576 5.576 24 Si 0.770 3.230 25 H -0.179 1.179 26 H -0.220 1.220 27 H -0.178 1.178 28 C -0.120 4.120 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.195 0.805 35 H 0.196 0.804 36 H 0.176 0.824 37 H 0.272 0.728 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.988 -27.357 -11.748 30.039 hybrid contribution 0.591 1.660 0.025 1.762 sum -3.397 -25.697 -11.723 28.448 Atomic orbital electron populations 1.21634 0.94501 1.02898 1.01516 1.22071 0.97599 0.92622 1.07345 1.23336 0.87531 0.92865 0.69444 1.90543 1.59347 1.49780 1.38139 1.20618 0.96020 0.93515 1.07183 1.21901 0.92559 0.99452 0.94992 1.21463 0.96166 0.96239 0.98085 1.21565 1.00314 0.91702 0.99050 1.17928 0.93123 0.83544 1.03661 1.43080 1.24260 1.05270 1.55559 1.20189 0.84208 0.86789 0.79360 1.90743 1.24502 1.83346 1.39641 1.20089 0.84456 0.86619 0.81189 1.90683 1.26091 1.83751 1.42899 1.47895 1.21153 1.08303 1.51447 1.22031 0.83520 1.01942 0.97792 1.19254 0.94747 0.77473 0.95764 0.93360 1.22359 1.00626 0.98773 0.99745 1.21262 1.45435 0.99427 0.91210 0.94090 1.25686 0.94233 0.99304 0.98234 1.70007 1.46969 1.19544 1.21044 0.85930 0.78360 0.78946 0.79769 1.17883 1.21991 1.17788 1.21430 0.94552 0.97891 0.98129 0.93737 0.89292 0.94059 0.85372 0.84966 0.80482 0.80448 0.82447 0.72832 0.93663 0.90302 0.88800 0.93100 0.92047 0.91220 0.92009 0.86949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.20 71.98 0.66 -1.25 16 2 C -0.16 -1.57 5.03 29.85 0.15 -1.42 16 3 C 0.39 8.16 7.12 28.04 0.20 8.36 16 4 O -0.50 -15.67 15.97 -2.93 -0.05 -15.72 16 5 C -0.17 -3.48 5.87 -20.17 -0.12 -3.59 16 6 C -0.07 -0.74 9.47 22.60 0.21 -0.52 16 7 C -0.10 -0.94 10.02 22.20 0.22 -0.71 16 8 C -0.11 -1.57 9.94 22.47 0.22 -1.35 16 9 C 0.11 2.64 6.34 38.16 0.24 2.88 16 10 N -0.63 -17.22 5.33 -304.94 -1.63 -18.85 16 11 C 0.51 17.98 7.53 87.24 0.66 18.63 16 12 O -0.51 -19.32 10.69 -3.35 -0.04 -19.35 16 13 C 0.49 20.30 7.72 87.24 0.67 20.98 16 14 O -0.55 -24.23 15.83 -3.28 -0.05 -24.28 16 15 N -0.56 -24.43 2.75 -828.50 -2.28 -26.71 16 16 C 0.09 3.50 8.47 127.77 1.08 4.58 16 17 C 0.23 11.15 2.21 44.25 0.10 11.25 16 18 H 0.05 2.51 5.97 -2.39 -0.01 2.50 16 19 C -0.16 -6.55 8.66 71.98 0.62 -5.93 16 20 C -0.54 -30.51 8.95 25.60 0.23 -30.28 16 21 H 0.04 2.60 7.89 -2.91 -0.02 2.58 16 22 C 0.02 1.42 5.45 84.65 0.46 1.89 16 23 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 24 Si 0.94 44.11 24.37 68.60 1.67 45.78 16 25 H -0.25 -10.92 6.87 99.48 0.68 -10.23 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 27 H -0.25 -11.41 6.53 99.48 0.65 -10.76 16 28 C -0.10 -2.74 8.22 22.72 0.19 -2.55 16 29 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.69 8.10 -2.38 -0.02 0.67 16 32 H 0.13 0.58 8.08 -2.39 -0.02 0.56 16 33 H 0.13 0.47 8.09 -2.39 -0.02 0.45 16 34 H 0.18 0.25 7.04 -2.91 -0.02 0.23 16 35 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 36 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.43 9.93 8.28 -92.71 -0.77 9.16 16 38 H 0.04 1.87 8.13 -2.39 -0.02 1.85 16 39 H 0.08 2.95 6.44 -2.39 -0.02 2.93 16 40 H 0.09 3.42 5.84 -2.39 -0.01 3.41 16 41 H 0.05 2.14 3.27 -2.39 -0.01 2.14 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.07 2.74 6.67 -2.39 -0.02 2.72 16 44 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 45 H 0.11 3.94 5.71 -2.91 -0.02 3.92 16 Total: -1.00 -80.20 367.95 3.93 -76.27 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.19 Total: 19.25 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 5.81 Total: 20.94 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -3.61 Total: -102.89 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.13 Total: -59.35 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.67 Total: 45.78 kcal Total: -80.20 3.93 -76.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132367576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.956 kcal (2) G-P(sol) polarization free energy of solvation -80.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds