Wall clock time and date at job start Tue Mar 31 2020 18:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00538 * 2 1 4 4 H 1.09006 * 109.46979 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.46934 * 239.99767 * 3 2 1 6 6 N 1.46500 * 109.47258 * 119.99822 * 3 2 1 7 7 C 1.34777 * 119.99745 * 205.00069 * 6 3 2 8 8 O 1.21360 * 120.00057 * 359.97438 * 7 6 3 9 9 C 1.49353 * 120.00058 * 180.02562 * 7 6 3 10 10 O 1.21376 * 119.99652 * 359.97438 * 9 7 6 11 11 N 1.34768 * 120.00185 * 179.72435 * 9 7 6 12 12 C 1.39724 * 120.00093 * 175.66111 * 11 9 7 13 13 C 1.38994 * 120.04727 * 214.83085 * 12 11 9 14 14 C 1.38099 * 120.03153 * 179.71911 * 13 12 11 15 15 C 1.38227 * 120.13272 * 0.55111 * 14 13 12 16 16 C 1.38773 * 120.09472 * 359.72877 * 15 14 13 17 17 O 1.35900 * 120.01667 * 179.97438 * 16 15 14 18 18 C 1.42894 * 117.00077 * 0.02562 * 17 16 15 19 19 C 1.53003 * 109.47425 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47652 * 180.02562 * 19 18 17 21 21 H 1.08006 * 119.99576 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00271 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00237 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99829 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47360 * 90.00137 * 24 22 20 26 26 H 1.48508 * 109.46875 * 209.99997 * 24 22 20 27 27 H 1.48500 * 109.47245 * 329.99787 * 24 22 20 28 28 C 1.38610 * 119.96175 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.99595 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00401 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.99595 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47223 * 299.99969 * 5 3 2 33 33 H 1.09003 * 109.47016 * 59.99782 * 5 3 2 34 34 H 1.09003 * 109.47101 * 179.97438 * 5 3 2 35 35 H 0.96999 * 120.00238 * 25.00112 * 6 3 2 36 36 H 0.97001 * 120.00144 * 355.65586 * 11 9 7 37 37 H 1.08002 * 119.98360 * 359.97438 * 13 12 11 38 38 H 1.08004 * 119.93550 * 180.27918 * 14 13 12 39 39 H 1.08007 * 119.95330 * 179.74307 * 15 14 13 40 40 H 1.09002 * 109.47848 * 300.00502 * 18 17 16 41 41 H 1.09001 * 109.47083 * 60.00768 * 18 17 16 42 42 H 1.09002 * 109.46922 * 300.00953 * 19 18 17 43 43 H 1.09006 * 109.46689 * 59.99858 * 19 18 17 44 44 H 0.97005 * 119.99995 * 179.97438 * 23 22 20 45 45 H 1.08004 * 120.06049 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3859 -1.2492 6 7 2.9058 1.3825 1.1962 7 6 3.2693 2.5837 1.6876 8 8 2.8993 3.6010 1.1389 9 6 4.1284 2.6629 2.9067 10 8 4.4988 1.6454 3.4552 11 7 4.4965 3.8639 3.3949 12 6 5.2236 3.9411 4.5856 13 6 5.0138 4.9994 5.4618 14 6 5.7284 5.0722 6.6413 15 6 6.6618 4.1000 6.9483 16 6 6.8798 3.0441 6.0746 17 8 7.7982 2.0893 6.3778 18 6 8.5023 2.2353 7.6126 19 6 9.4860 1.0753 7.7791 20 6 10.2281 1.2288 9.0816 21 1 10.0188 2.0696 9.7265 22 6 11.1743 0.2962 9.4501 23 7 11.8216 0.4299 10.5870 24 14 11.5368 -1.1575 8.3343 25 1 12.6223 -0.7962 7.3875 26 1 11.9631 -2.3183 9.1566 27 1 10.3132 -1.5136 7.5720 28 6 6.1603 2.9638 4.8926 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8499 -0.9354 0.0004 32 1 3.6515 0.5573 -1.2492 33 1 2.3166 1.3281 -2.1392 34 1 3.4880 2.3300 -1.2495 35 1 3.2019 0.5695 1.6345 36 1 4.2567 4.6748 2.9197 37 1 4.2885 5.7629 5.2221 38 1 5.5609 5.8929 7.3232 39 1 7.2221 4.1620 7.8696 40 1 9.0498 3.1778 7.6096 41 1 7.7914 2.2307 8.4389 42 1 8.9388 0.1325 7.7819 43 1 10.1968 1.0803 6.9526 44 1 12.4870 -0.2265 10.8464 45 1 6.3283 2.1425 4.2116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133735005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:23 Heat of formation + Delta-G solvation = -60.407233 kcal Electronic energy + Delta-G solvation = -26819.920474 eV Core-core repulsion = 22803.584675 eV Total energy + Delta-G solvation = -4016.335799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35923 -40.02272 -39.04391 -37.33716 -37.01202 -34.85057 -33.34402 -33.23151 -31.15966 -30.38707 -29.95543 -29.26250 -25.97779 -25.16562 -23.71897 -22.65743 -21.87606 -21.01298 -20.65377 -20.15010 -19.01549 -18.16627 -17.30156 -16.76357 -16.58373 -16.30023 -15.97130 -15.57500 -15.45873 -15.26896 -14.98934 -14.54326 -14.35140 -14.20961 -14.05902 -13.55897 -13.26515 -13.06892 -12.91852 -12.76504 -12.59856 -12.31459 -12.08663 -11.94878 -11.77755 -11.55927 -11.41902 -10.96268 -10.86015 -10.47310 -10.27123 -10.17397 -9.98229 -9.86156 -9.78045 -9.74986 -9.34440 -8.62434 -8.43978 -7.94613 -6.13525 -4.14443 0.80385 1.41154 1.47754 1.54759 2.10594 2.82310 3.21397 3.29090 3.36335 3.42517 3.72304 3.85366 4.05388 4.12439 4.39474 4.48299 4.71248 4.86423 4.90959 5.10237 5.12151 5.20703 5.23167 5.25695 5.32981 5.39976 5.54715 5.66001 5.67433 5.72631 5.90463 5.91611 5.97288 6.06808 6.11871 6.22138 6.39411 6.43744 6.58624 6.60807 6.79809 6.98052 7.08734 7.23436 7.35250 7.58828 7.62160 7.89092 8.38495 8.86971 9.46842 10.98876 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.002137 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.544025 B =13099.749561 C =14672.758043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.175 4.175 3 C 0.168 3.832 4 H 0.096 0.904 5 C -0.162 4.162 6 N -0.693 5.693 7 C 0.515 3.485 8 O -0.519 6.519 9 C 0.503 3.497 10 O -0.490 6.490 11 N -0.640 5.640 12 C 0.167 3.833 13 C -0.186 4.186 14 C -0.061 4.061 15 C -0.219 4.219 16 C 0.162 3.838 17 O -0.315 6.315 18 C 0.072 3.928 19 C -0.009 4.009 20 C -0.526 4.526 21 H 0.075 0.925 22 C 0.072 3.928 23 N -0.898 5.898 24 Si 0.880 3.120 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 C -0.161 4.161 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.415 0.585 36 H 0.422 0.578 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.024 0.976 44 H 0.266 0.734 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.671 5.450 -22.142 32.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.193 4.193 3 C 0.065 3.935 4 H 0.114 0.886 5 C -0.220 4.220 6 N -0.346 5.346 7 C 0.295 3.705 8 O -0.394 6.394 9 C 0.284 3.716 10 O -0.363 6.363 11 N -0.287 5.287 12 C 0.074 3.926 13 C -0.207 4.207 14 C -0.079 4.079 15 C -0.238 4.238 16 C 0.114 3.886 17 O -0.228 6.228 18 C -0.002 4.002 19 C -0.047 4.047 20 C -0.564 4.564 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.536 5.536 24 Si 0.707 3.293 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.187 1.187 28 C -0.181 4.181 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.252 0.748 36 H 0.260 0.740 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.498 5.158 -22.172 32.006 hybrid contribution 0.329 -0.641 -0.251 0.763 sum -22.170 4.517 -22.423 31.854 Atomic orbital electron populations 1.24017 0.95722 1.02589 0.97413 1.22997 0.96229 0.97719 1.02391 1.20214 0.92166 0.96865 0.84278 0.88626 1.22162 1.00232 1.02984 0.96660 1.45874 1.51057 1.08509 1.29147 1.19948 0.81389 0.84477 0.84683 1.90774 1.54319 1.34371 1.59961 1.20216 0.81682 0.84270 0.85390 1.90848 1.52687 1.34230 1.58519 1.43018 1.52915 1.09401 1.23350 1.17271 0.92461 0.96600 0.86281 1.20686 1.04385 1.00266 0.95321 1.20700 0.94105 0.97672 0.95466 1.21468 1.03615 0.96740 1.01973 1.18898 0.88821 0.88006 0.92852 1.86141 1.49395 1.45225 1.42079 1.23118 0.93868 1.01588 0.81661 1.19593 0.93667 0.93351 0.98080 1.20832 1.20946 1.11516 1.03135 0.90720 1.24930 0.95245 0.97815 0.95038 1.69894 1.25488 1.36291 1.21882 0.86762 0.79351 0.82307 0.80886 1.20067 1.21178 1.18704 1.20380 0.97415 1.02172 0.98161 0.88143 0.87594 0.86350 0.91858 0.91025 0.91596 0.74807 0.73970 0.85709 0.85330 0.84723 0.92376 0.92351 0.95350 0.95813 0.92456 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 14.32 29.01 0.42 -0.29 16 2 C -0.17 -0.87 8.96 -36.03 -0.32 -1.19 16 3 C 0.17 1.08 2.94 -69.08 -0.20 0.87 16 4 H 0.10 0.68 7.22 -51.93 -0.37 0.31 16 5 C -0.16 -0.95 9.47 37.16 0.35 -0.60 16 6 N -0.69 -5.43 5.06 -55.39 -0.28 -5.71 16 7 C 0.51 5.12 7.85 -11.63 -0.09 5.03 16 8 O -0.52 -5.84 16.14 5.49 0.09 -5.76 16 9 C 0.50 5.81 7.73 -11.63 -0.09 5.72 16 10 O -0.49 -6.94 13.91 5.47 0.08 -6.86 16 11 N -0.64 -6.87 5.32 -10.31 -0.05 -6.92 16 12 C 0.17 2.17 6.29 -83.77 -0.53 1.65 16 13 C -0.19 -2.11 9.96 -39.35 -0.39 -2.51 16 14 C -0.06 -0.73 10.03 -39.64 -0.40 -1.13 16 15 C -0.22 -3.26 9.04 -39.39 -0.36 -3.61 16 16 C 0.16 2.79 6.68 -39.25 -0.26 2.53 16 17 O -0.32 -6.31 10.13 -19.42 -0.20 -6.51 16 18 C 0.07 1.48 4.68 37.16 0.17 1.65 16 19 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 20 C -0.53 -14.84 9.66 -34.44 -0.33 -15.17 16 21 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 22 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 23 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 24 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 28 C -0.16 -2.55 8.63 -39.23 -0.34 -2.89 16 29 H 0.10 0.41 7.83 -52.49 -0.41 0.00 16 30 H 0.11 0.35 8.06 -52.49 -0.42 -0.07 16 31 H 0.12 0.49 8.06 -52.49 -0.42 0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.42 2.97 8.06 -40.82 -0.33 2.64 16 36 H 0.42 3.51 8.30 -40.82 -0.34 3.17 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.13 1.96 6.29 -52.48 -0.33 1.63 16 40 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 41 H 0.06 1.16 7.66 -51.93 -0.40 0.76 16 42 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 43 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.14 2.43 6.22 -52.48 -0.33 2.10 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -33.07 385.84 -7.26 -40.33 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.22 Total: 3.40 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.59 Total: -8.32 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.44 Total: -39.13 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.03 Total: -19.13 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.07 -7.26 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133735005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.075 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds