Wall clock time and date at job start Tue Mar 31 2020 18:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00538 * 2 1 4 4 H 1.09006 * 109.46979 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.46934 * 239.99767 * 3 2 1 6 6 N 1.46500 * 109.47258 * 119.99822 * 3 2 1 7 7 C 1.34777 * 119.99745 * 205.00069 * 6 3 2 8 8 O 1.21360 * 120.00057 * 359.97438 * 7 6 3 9 9 C 1.49353 * 120.00058 * 180.02562 * 7 6 3 10 10 O 1.21376 * 119.99652 * 359.97438 * 9 7 6 11 11 N 1.34768 * 120.00185 * 179.72435 * 9 7 6 12 12 C 1.39724 * 120.00093 * 175.66111 * 11 9 7 13 13 C 1.38994 * 120.04727 * 214.83085 * 12 11 9 14 14 C 1.38099 * 120.03153 * 179.71911 * 13 12 11 15 15 C 1.38227 * 120.13272 * 0.55111 * 14 13 12 16 16 C 1.38773 * 120.09472 * 359.72877 * 15 14 13 17 17 O 1.35900 * 120.01667 * 179.97438 * 16 15 14 18 18 C 1.42894 * 117.00077 * 0.02562 * 17 16 15 19 19 C 1.53003 * 109.47425 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47652 * 180.02562 * 19 18 17 21 21 H 1.08006 * 119.99576 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00271 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00237 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99829 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47360 * 90.00137 * 24 22 20 26 26 H 1.48508 * 109.46875 * 209.99997 * 24 22 20 27 27 H 1.48500 * 109.47245 * 329.99787 * 24 22 20 28 28 C 1.38610 * 119.96175 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.99595 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00401 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.99595 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47223 * 299.99969 * 5 3 2 33 33 H 1.09003 * 109.47016 * 59.99782 * 5 3 2 34 34 H 1.09003 * 109.47101 * 179.97438 * 5 3 2 35 35 H 0.96999 * 120.00238 * 25.00112 * 6 3 2 36 36 H 0.97001 * 120.00144 * 355.65586 * 11 9 7 37 37 H 1.08002 * 119.98360 * 359.97438 * 13 12 11 38 38 H 1.08004 * 119.93550 * 180.27918 * 14 13 12 39 39 H 1.08007 * 119.95330 * 179.74307 * 15 14 13 40 40 H 1.09002 * 109.47848 * 300.00502 * 18 17 16 41 41 H 1.09001 * 109.47083 * 60.00768 * 18 17 16 42 42 H 1.09002 * 109.46922 * 300.00953 * 19 18 17 43 43 H 1.09006 * 109.46689 * 59.99858 * 19 18 17 44 44 H 0.97005 * 119.99995 * 179.97438 * 23 22 20 45 45 H 1.08004 * 120.06049 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3859 -1.2492 6 7 2.9058 1.3825 1.1962 7 6 3.2693 2.5837 1.6876 8 8 2.8993 3.6010 1.1389 9 6 4.1284 2.6629 2.9067 10 8 4.4988 1.6454 3.4552 11 7 4.4965 3.8639 3.3949 12 6 5.2236 3.9411 4.5856 13 6 5.0138 4.9994 5.4618 14 6 5.7284 5.0722 6.6413 15 6 6.6618 4.1000 6.9483 16 6 6.8798 3.0441 6.0746 17 8 7.7982 2.0893 6.3778 18 6 8.5023 2.2353 7.6126 19 6 9.4860 1.0753 7.7791 20 6 10.2281 1.2288 9.0816 21 1 10.0188 2.0696 9.7265 22 6 11.1743 0.2962 9.4501 23 7 11.8216 0.4299 10.5870 24 14 11.5368 -1.1575 8.3343 25 1 12.6223 -0.7962 7.3875 26 1 11.9631 -2.3183 9.1566 27 1 10.3132 -1.5136 7.5720 28 6 6.1603 2.9638 4.8926 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8499 -0.9354 0.0004 32 1 3.6515 0.5573 -1.2492 33 1 2.3166 1.3281 -2.1392 34 1 3.4880 2.3300 -1.2495 35 1 3.2019 0.5695 1.6345 36 1 4.2567 4.6748 2.9197 37 1 4.2885 5.7629 5.2221 38 1 5.5609 5.8929 7.3232 39 1 7.2221 4.1620 7.8696 40 1 9.0498 3.1778 7.6096 41 1 7.7914 2.2307 8.4389 42 1 8.9388 0.1325 7.7819 43 1 10.1968 1.0803 6.9526 44 1 12.4870 -0.2265 10.8464 45 1 6.3283 2.1425 4.2116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133735005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:22 Heat of formation + Delta-G solvation = -83.054225 kcal Electronic energy + Delta-G solvation = -26820.902521 eV Core-core repulsion = 22803.584675 eV Total energy + Delta-G solvation = -4017.317846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.26924 -41.08298 -40.08272 -38.51809 -37.64046 -35.89586 -35.34387 -33.81927 -32.94689 -31.34101 -30.80299 -30.38720 -27.22862 -26.58655 -24.52489 -23.61473 -23.26513 -22.08407 -21.57523 -21.08132 -19.99382 -19.31736 -18.68935 -18.08936 -17.33875 -17.27200 -17.01532 -16.97160 -16.77531 -16.47891 -16.09015 -15.72381 -15.22768 -15.03943 -14.82383 -14.76055 -14.55868 -14.44252 -14.35858 -13.59621 -13.49775 -13.36819 -13.24219 -12.95565 -12.78803 -12.70678 -12.66729 -12.31868 -12.09942 -11.88181 -11.84533 -11.69755 -11.45497 -11.31418 -10.89454 -10.82417 -10.53881 -10.36262 -9.54122 -9.10490 -8.35774 -6.42135 -0.14520 0.42662 0.48907 0.89816 1.34571 1.36222 1.43606 1.49070 1.95637 2.22071 2.32128 2.60614 2.75744 2.99077 3.25966 3.66054 3.87335 4.04688 4.11202 4.15623 4.20178 4.22311 4.22935 4.36057 4.46895 4.49643 4.58173 4.63837 4.67133 4.82678 4.98408 5.08335 5.10793 5.16093 5.17042 5.19929 5.28606 5.34477 5.45293 5.51242 5.61927 5.70769 5.75848 5.85761 6.15336 6.19084 6.48626 6.57737 6.63195 6.76375 7.22979 8.79664 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.002137 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.544025 B =13099.749561 C =14672.758043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.183 4.183 3 C 0.166 3.834 4 H 0.089 0.911 5 C -0.159 4.159 6 N -0.683 5.683 7 C 0.520 3.480 8 O -0.533 6.533 9 C 0.503 3.497 10 O -0.520 6.520 11 N -0.629 5.629 12 C 0.167 3.833 13 C -0.167 4.167 14 C -0.053 4.053 15 C -0.228 4.228 16 C 0.127 3.873 17 O -0.337 6.337 18 C 0.086 3.914 19 C -0.008 4.008 20 C -0.535 4.535 21 H 0.045 0.955 22 C 0.015 3.985 23 N -0.940 5.940 24 Si 0.946 3.054 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.254 1.254 28 C -0.177 4.177 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.419 0.581 36 H 0.436 0.564 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.132 0.868 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.270 0.730 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.658 6.006 -23.922 34.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.201 4.201 3 C 0.064 3.936 4 H 0.107 0.893 5 C -0.217 4.217 6 N -0.335 5.335 7 C 0.300 3.700 8 O -0.410 6.410 9 C 0.285 3.715 10 O -0.394 6.394 11 N -0.277 5.277 12 C 0.073 3.927 13 C -0.187 4.187 14 C -0.072 4.072 15 C -0.247 4.247 16 C 0.081 3.919 17 O -0.251 6.251 18 C 0.012 3.988 19 C -0.045 4.045 20 C -0.573 4.573 21 H 0.063 0.937 22 C -0.184 4.184 23 N -0.580 5.580 24 Si 0.769 3.231 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.178 1.178 28 C -0.198 4.198 29 H 0.120 0.880 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.256 0.744 36 H 0.276 0.724 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.517 5.734 -23.986 34.774 hybrid contribution 0.805 -0.699 0.272 1.101 sum -23.711 5.035 -23.714 33.911 Atomic orbital electron populations 1.24197 0.95605 1.03354 0.96094 1.22973 0.96419 0.97229 1.03520 1.20339 0.91985 0.97591 0.83708 0.89299 1.22135 1.00328 1.02244 0.96983 1.45960 1.50358 1.07966 1.29246 1.19643 0.81266 0.84951 0.84147 1.90770 1.55080 1.34859 1.60275 1.20560 0.81369 0.84001 0.85553 1.90843 1.53853 1.35255 1.59495 1.42968 1.52093 1.09894 1.22750 1.17393 0.91771 0.96289 0.87239 1.21143 1.03755 0.99818 0.93987 1.21127 0.92454 0.97441 0.96129 1.21596 1.04612 0.96952 1.01561 1.19148 0.89633 0.88814 0.94355 1.86044 1.50679 1.46971 1.41420 1.22721 0.93466 1.00096 0.82558 1.19457 0.94226 0.94767 0.96070 1.21091 1.21344 1.10595 1.04254 0.93652 1.25843 0.95086 1.00916 0.96533 1.70017 1.26442 1.37730 1.23791 0.85716 0.79641 0.78658 0.79046 1.18943 1.20331 1.17764 1.20355 0.98719 1.02891 0.97795 0.87981 0.86286 0.85421 0.91454 0.89588 0.93159 0.74389 0.72351 0.81676 0.81718 0.84976 0.91855 0.92124 0.95701 0.95627 0.92086 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 14.32 67.78 0.97 -0.11 16 2 C -0.18 -1.53 8.96 25.65 0.23 -1.30 16 3 C 0.17 1.94 2.94 44.24 0.13 2.07 16 4 H 0.09 1.18 7.22 -2.38 -0.02 1.16 16 5 C -0.16 -1.69 9.47 71.98 0.68 -1.01 16 6 N -0.68 -10.16 5.06 -447.53 -2.27 -12.42 16 7 C 0.52 9.92 7.85 87.24 0.68 10.61 16 8 O -0.53 -11.41 16.14 -3.28 -0.05 -11.46 16 9 C 0.50 11.29 7.73 87.24 0.67 11.97 16 10 O -0.52 -14.84 13.91 -3.33 -0.05 -14.89 16 11 N -0.63 -12.51 5.32 -304.89 -1.62 -14.13 16 12 C 0.17 4.07 6.29 38.20 0.24 4.31 16 13 C -0.17 -3.20 9.96 22.42 0.22 -2.98 16 14 C -0.05 -1.12 10.03 22.23 0.22 -0.89 16 15 C -0.23 -6.59 9.04 22.40 0.20 -6.39 16 16 C 0.13 4.41 6.68 22.49 0.15 4.56 16 17 O -0.34 -13.83 10.13 -92.42 -0.94 -14.77 16 18 C 0.09 3.62 4.68 71.98 0.34 3.96 16 19 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 20 C -0.53 -30.90 9.66 25.60 0.25 -30.65 16 21 H 0.05 2.80 7.99 -2.91 -0.02 2.78 16 22 C 0.01 0.85 5.47 84.65 0.46 1.32 16 23 N -0.94 -58.24 13.96 21.44 0.30 -57.94 16 24 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 25 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 28 C -0.18 -5.65 8.63 22.49 0.19 -5.46 16 29 H 0.10 0.67 7.83 -2.91 -0.02 0.65 16 30 H 0.12 0.53 8.06 -2.91 -0.02 0.50 16 31 H 0.13 0.83 8.06 -2.91 -0.02 0.80 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.42 5.73 8.06 -92.71 -0.75 4.98 16 36 H 0.44 6.23 8.30 -92.71 -0.77 5.46 16 37 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.13 3.81 6.29 -2.91 -0.02 3.79 16 40 H 0.06 2.54 7.66 -2.39 -0.02 2.53 16 41 H 0.06 2.47 7.66 -2.39 -0.02 2.45 16 42 H 0.02 1.23 7.20 -2.39 -0.02 1.21 16 43 H 0.03 1.24 7.57 -2.38 -0.02 1.22 16 44 H 0.27 15.55 8.31 -92.70 -0.77 14.77 16 45 H 0.13 4.42 6.22 -2.91 -0.02 4.40 16 Total: -1.00 -73.07 385.84 2.50 -70.57 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -0.55 Total: 18.54 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.78 Total: -10.23 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -3.59 Total: -84.50 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.04 Total: -41.11 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -73.07 2.50 -70.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133735005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.485 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds