Wall clock time and date at job start Tue Mar 31 2020 18:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50702 * 119.99761 * 2 1 4 4 H 1.09005 * 109.46976 * 4.99978 * 3 2 1 5 5 C 1.52999 * 109.46860 * 124.99542 * 3 2 1 6 6 N 1.46496 * 109.47037 * 244.99802 * 3 2 1 7 7 C 1.34776 * 120.00005 * 155.00130 * 6 3 2 8 8 O 1.21366 * 119.99887 * 359.97438 * 7 6 3 9 9 C 1.49346 * 120.00198 * 180.02562 * 7 6 3 10 10 O 1.21375 * 120.00137 * 359.97438 * 9 7 6 11 11 N 1.34776 * 120.00198 * 179.97438 * 9 7 6 12 12 C 1.39725 * 120.00075 * 185.27471 * 11 9 7 13 13 C 1.38984 * 120.04684 * 213.34588 * 12 11 9 14 14 C 1.38107 * 120.03379 * 180.02562 * 13 12 11 15 15 C 1.38233 * 120.13033 * 359.72420 * 14 13 12 16 16 C 1.38774 * 120.09339 * 0.55479 * 15 14 13 17 17 O 1.35895 * 120.01966 * 179.72165 * 16 15 14 18 18 C 1.42910 * 116.99682 * 359.72501 * 17 16 15 19 19 C 1.52994 * 109.46845 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47100 * 179.97438 * 19 18 17 21 21 H 1.07992 * 119.99514 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99923 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99970 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99652 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46903 * 60.00313 * 24 22 20 26 26 H 1.48497 * 109.46771 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47032 * 300.00470 * 24 22 20 28 28 C 1.38610 * 119.96227 * 359.44292 * 16 15 14 29 29 H 1.07996 * 120.00037 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99494 * 180.02562 * 1 2 3 31 31 H 1.07992 * 120.00068 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46969 * 60.00432 * 5 3 2 33 33 H 1.09004 * 109.46687 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47658 * 300.00147 * 5 3 2 35 35 H 0.97003 * 119.99980 * 335.00077 * 6 3 2 36 36 H 0.96999 * 120.00055 * 5.27611 * 11 9 7 37 37 H 1.08001 * 119.98784 * 359.97438 * 13 12 11 38 38 H 1.08001 * 119.93791 * 179.97438 * 14 13 12 39 39 H 1.08002 * 119.95065 * 180.29542 * 15 14 13 40 40 H 1.09003 * 109.46580 * 299.99856 * 18 17 16 41 41 H 1.08993 * 109.47222 * 59.99916 * 18 17 16 42 42 H 1.09005 * 109.47722 * 299.99833 * 19 18 17 43 43 H 1.09002 * 109.47382 * 59.99759 * 19 18 17 44 44 H 0.96998 * 119.99576 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.06040 * 180.25507 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3585 2.1317 0.0896 5 6 3.0350 1.3332 1.1817 6 7 2.8132 1.4362 -1.2518 7 6 3.1405 2.6582 -1.7165 8 8 2.8137 3.6501 -1.0981 9 6 3.9043 2.7919 -2.9929 10 8 4.2307 1.8000 -3.6115 11 7 4.2311 4.0139 -3.4579 12 6 4.8478 4.1451 -4.7048 13 6 5.7735 5.1592 -4.9201 14 6 6.3825 5.2889 -6.1529 15 6 6.0777 4.4078 -7.1735 16 6 5.1500 3.3968 -6.9661 17 8 4.8473 2.5349 -7.9723 18 6 5.5177 2.7320 -9.2189 19 6 5.0521 1.6738 -10.2211 20 6 5.7585 1.8820 -11.5359 21 1 6.4688 2.6880 -11.6455 22 6 5.4988 1.0426 -12.5985 23 7 4.6341 0.0607 -12.4647 24 14 6.3750 1.3002 -14.2281 25 1 7.8412 1.1800 -14.0261 26 1 5.9230 0.2733 -15.2008 27 1 6.0568 2.6525 -14.7528 28 6 4.5365 3.2630 -5.7304 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9352 0.0004 32 1 3.7400 0.5066 1.0921 33 1 3.5803 2.2770 1.1814 34 1 2.4772 1.2356 2.1130 35 1 3.0741 0.6434 -1.7461 36 1 4.0383 4.8024 -2.9269 37 1 6.0161 5.8467 -4.1234 38 1 7.1012 6.0777 -6.3187 39 1 6.5593 4.5090 -8.1349 40 1 5.2847 3.7249 -9.6037 41 1 6.5938 2.6430 -9.0708 42 1 5.2854 0.6811 -9.8361 43 1 3.9758 1.7623 -10.3693 44 1 4.4512 -0.5295 -13.2124 45 1 3.8173 2.4742 -5.5661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133735226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:27 Heat of formation + Delta-G solvation = -64.551258 kcal Electronic energy + Delta-G solvation = -26772.673597 eV Core-core repulsion = 22756.158099 eV Total energy + Delta-G solvation = -4016.515497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30779 -39.96033 -38.97376 -37.26232 -36.95998 -34.79140 -33.36171 -33.17216 -30.92643 -30.34141 -29.75771 -29.10977 -25.90289 -24.99838 -23.69048 -22.58807 -22.02230 -20.97350 -20.71247 -20.14019 -18.95966 -18.10210 -17.22372 -16.57322 -16.37136 -16.11242 -15.94082 -15.45974 -15.39656 -15.29840 -14.80140 -14.57037 -14.48643 -14.21309 -14.15368 -13.47241 -13.12105 -12.97545 -12.76865 -12.70126 -12.31935 -12.26628 -12.03997 -11.79947 -11.69395 -11.40743 -11.38382 -10.92501 -10.83865 -10.57001 -10.42603 -10.21782 -9.84511 -9.79988 -9.71204 -9.65218 -9.30619 -8.45150 -8.35429 -7.87860 -6.09327 -4.14172 0.84028 1.42986 1.55219 1.62077 2.15795 2.87451 3.27050 3.29237 3.33700 3.35584 3.80457 3.91457 4.10119 4.17302 4.41987 4.52664 4.74956 4.90645 4.94408 5.14125 5.15448 5.26859 5.28381 5.30608 5.37858 5.43695 5.59078 5.67809 5.73042 5.78008 6.00437 6.02796 6.03754 6.11632 6.16622 6.26154 6.46841 6.55022 6.65129 6.71206 6.87864 7.02898 7.39973 7.50934 7.63666 7.65175 7.80950 8.05407 8.24323 8.91198 9.49939 11.02186 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.002017 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.711302 B =13880.473399 C =15459.817329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.177 4.177 3 C 0.168 3.832 4 H 0.096 0.904 5 C -0.162 4.162 6 N -0.692 5.692 7 C 0.515 3.485 8 O -0.519 6.519 9 C 0.503 3.497 10 O -0.488 6.488 11 N -0.641 5.641 12 C 0.171 3.829 13 C -0.189 4.189 14 C -0.060 4.060 15 C -0.221 4.221 16 C 0.165 3.835 17 O -0.312 6.312 18 C 0.064 3.936 19 C 0.025 3.975 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.900 3.100 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.276 1.276 28 C -0.162 4.162 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.415 0.585 36 H 0.422 0.578 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.852 5.997 27.587 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.065 3.935 4 H 0.114 0.886 5 C -0.220 4.220 6 N -0.346 5.346 7 C 0.295 3.705 8 O -0.395 6.395 9 C 0.284 3.716 10 O -0.361 6.361 11 N -0.288 5.288 12 C 0.078 3.922 13 C -0.210 4.210 14 C -0.079 4.079 15 C -0.241 4.241 16 C 0.117 3.883 17 O -0.224 6.224 18 C -0.010 4.010 19 C -0.012 4.012 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.183 4.183 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.252 0.748 36 H 0.260 0.740 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.116 5.636 27.517 28.388 hybrid contribution 0.638 0.169 -0.986 1.187 sum -3.478 5.804 26.531 27.380 Atomic orbital electron populations 1.24047 0.95773 1.02620 0.97035 1.22996 0.96207 0.97677 1.02646 1.20210 0.93408 0.96779 0.83136 0.88635 1.22159 0.99581 1.02918 0.97331 1.45886 1.55477 1.08307 1.24894 1.19958 0.80663 0.84312 0.85578 1.90773 1.53189 1.36891 1.58623 1.20214 0.80953 0.84084 0.86347 1.90867 1.50572 1.36649 1.57977 1.43051 1.58176 1.09203 1.18349 1.17253 0.94402 0.97035 0.83532 1.20646 0.99939 1.01495 0.98874 1.20686 0.97750 0.97662 0.91790 1.21438 1.02764 0.98350 1.01498 1.18914 0.92093 0.88773 0.88515 1.86196 1.64306 1.50786 1.21142 1.23372 0.95612 1.01723 0.80245 1.19128 0.97872 0.93161 0.91057 1.20929 1.24990 1.14895 0.95703 0.92385 1.24997 0.95190 0.94961 0.99076 1.69969 1.33628 1.17140 1.31980 0.86538 0.79926 0.77943 0.82906 1.20092 1.21128 1.20102 1.20244 1.04751 1.03199 0.90082 0.88136 0.87573 0.86353 0.91917 0.91666 0.91031 0.74788 0.74012 0.85773 0.85437 0.84852 0.92971 0.92975 0.95336 0.95377 0.92648 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 14.32 29.01 0.42 -0.38 16 2 C -0.18 -0.96 8.96 -36.03 -0.32 -1.29 16 3 C 0.17 1.14 2.93 -69.08 -0.20 0.94 16 4 H 0.10 0.73 7.23 -51.93 -0.38 0.36 16 5 C -0.16 -0.97 9.47 37.16 0.35 -0.62 16 6 N -0.69 -5.76 5.06 -55.40 -0.28 -6.04 16 7 C 0.51 5.37 7.85 -11.63 -0.09 5.28 16 8 O -0.52 -6.07 16.15 5.48 0.09 -5.98 16 9 C 0.50 6.08 7.62 -11.63 -0.09 5.99 16 10 O -0.49 -7.24 14.16 5.48 0.08 -7.16 16 11 N -0.64 -7.19 5.32 -10.31 -0.05 -7.25 16 12 C 0.17 2.32 6.27 -83.77 -0.53 1.79 16 13 C -0.19 -2.22 9.96 -39.35 -0.39 -2.62 16 14 C -0.06 -0.75 10.03 -39.63 -0.40 -1.14 16 15 C -0.22 -3.40 9.04 -39.39 -0.36 -3.76 16 16 C 0.17 2.97 6.68 -39.25 -0.26 2.71 16 17 O -0.31 -6.60 10.13 -19.41 -0.20 -6.80 16 18 C 0.06 1.39 4.68 37.15 0.17 1.57 16 19 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 24 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 28 C -0.16 -2.69 8.59 -39.23 -0.34 -3.03 16 29 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 30 H 0.11 0.42 8.06 -52.49 -0.42 0.00 16 31 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.42 3.19 8.06 -40.82 -0.33 2.86 16 36 H 0.42 3.68 8.30 -40.82 -0.34 3.34 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.13 1.98 6.29 -52.49 -0.33 1.65 16 40 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 41 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.14 2.46 6.42 -52.49 -0.34 2.12 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -32.91 389.73 -7.64 -40.54 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.26 Total: 3.86 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.59 Total: -7.48 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.40 Total: -39.15 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.03 Total: -19.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.91 -7.64 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133735226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.008 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds