Wall clock time and date at job start Tue Mar 31 2020 18:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50702 * 119.99761 * 2 1 4 4 H 1.09005 * 109.46976 * 4.99978 * 3 2 1 5 5 C 1.52999 * 109.46860 * 124.99542 * 3 2 1 6 6 N 1.46496 * 109.47037 * 244.99802 * 3 2 1 7 7 C 1.34776 * 120.00005 * 155.00130 * 6 3 2 8 8 O 1.21366 * 119.99887 * 359.97438 * 7 6 3 9 9 C 1.49346 * 120.00198 * 180.02562 * 7 6 3 10 10 O 1.21375 * 120.00137 * 359.97438 * 9 7 6 11 11 N 1.34776 * 120.00198 * 179.97438 * 9 7 6 12 12 C 1.39725 * 120.00075 * 185.27471 * 11 9 7 13 13 C 1.38984 * 120.04684 * 213.34588 * 12 11 9 14 14 C 1.38107 * 120.03379 * 180.02562 * 13 12 11 15 15 C 1.38233 * 120.13033 * 359.72420 * 14 13 12 16 16 C 1.38774 * 120.09339 * 0.55479 * 15 14 13 17 17 O 1.35895 * 120.01966 * 179.72165 * 16 15 14 18 18 C 1.42910 * 116.99682 * 359.72501 * 17 16 15 19 19 C 1.52994 * 109.46845 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.47100 * 179.97438 * 19 18 17 21 21 H 1.07992 * 119.99514 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99923 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99970 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99652 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46903 * 60.00313 * 24 22 20 26 26 H 1.48497 * 109.46771 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47032 * 300.00470 * 24 22 20 28 28 C 1.38610 * 119.96227 * 359.44292 * 16 15 14 29 29 H 1.07996 * 120.00037 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99494 * 180.02562 * 1 2 3 31 31 H 1.07992 * 120.00068 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46969 * 60.00432 * 5 3 2 33 33 H 1.09004 * 109.46687 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47658 * 300.00147 * 5 3 2 35 35 H 0.97003 * 119.99980 * 335.00077 * 6 3 2 36 36 H 0.96999 * 120.00055 * 5.27611 * 11 9 7 37 37 H 1.08001 * 119.98784 * 359.97438 * 13 12 11 38 38 H 1.08001 * 119.93791 * 179.97438 * 14 13 12 39 39 H 1.08002 * 119.95065 * 180.29542 * 15 14 13 40 40 H 1.09003 * 109.46580 * 299.99856 * 18 17 16 41 41 H 1.08993 * 109.47222 * 59.99916 * 18 17 16 42 42 H 1.09005 * 109.47722 * 299.99833 * 19 18 17 43 43 H 1.09002 * 109.47382 * 59.99759 * 19 18 17 44 44 H 0.96998 * 119.99576 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.06040 * 180.25507 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3585 2.1317 0.0896 5 6 3.0350 1.3332 1.1817 6 7 2.8132 1.4362 -1.2518 7 6 3.1405 2.6582 -1.7165 8 8 2.8137 3.6501 -1.0981 9 6 3.9043 2.7919 -2.9929 10 8 4.2307 1.8000 -3.6115 11 7 4.2311 4.0139 -3.4579 12 6 4.8478 4.1451 -4.7048 13 6 5.7735 5.1592 -4.9201 14 6 6.3825 5.2889 -6.1529 15 6 6.0777 4.4078 -7.1735 16 6 5.1500 3.3968 -6.9661 17 8 4.8473 2.5349 -7.9723 18 6 5.5177 2.7320 -9.2189 19 6 5.0521 1.6738 -10.2211 20 6 5.7585 1.8820 -11.5359 21 1 6.4688 2.6880 -11.6455 22 6 5.4988 1.0426 -12.5985 23 7 4.6341 0.0607 -12.4647 24 14 6.3750 1.3002 -14.2281 25 1 7.8412 1.1800 -14.0261 26 1 5.9230 0.2733 -15.2008 27 1 6.0568 2.6525 -14.7528 28 6 4.5365 3.2630 -5.7304 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9352 0.0004 32 1 3.7400 0.5066 1.0921 33 1 3.5803 2.2770 1.1814 34 1 2.4772 1.2356 2.1130 35 1 3.0741 0.6434 -1.7461 36 1 4.0383 4.8024 -2.9269 37 1 6.0161 5.8467 -4.1234 38 1 7.1012 6.0777 -6.3187 39 1 6.5593 4.5090 -8.1349 40 1 5.2847 3.7249 -9.6037 41 1 6.5938 2.6430 -9.0708 42 1 5.2854 0.6811 -9.8361 43 1 3.9758 1.7623 -10.3693 44 1 4.4512 -0.5295 -13.2124 45 1 3.8173 2.4742 -5.5661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133735226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:26 Heat of formation + Delta-G solvation = -86.861401 kcal Electronic energy + Delta-G solvation = -26773.641037 eV Core-core repulsion = 22756.158099 eV Total energy + Delta-G solvation = -4017.482938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.27152 -41.07378 -40.07783 -38.51054 -37.64082 -35.89747 -35.38471 -33.80929 -32.61443 -31.23113 -30.79839 -30.35945 -27.11842 -26.60258 -24.55949 -23.62945 -23.49510 -22.13886 -21.56928 -21.09319 -19.96153 -19.23221 -18.42040 -18.02183 -17.47033 -17.05076 -17.02724 -16.88946 -16.74789 -16.67190 -16.26048 -15.54061 -15.36091 -15.00880 -14.81352 -14.54064 -14.47481 -14.32146 -14.29217 -13.56574 -13.43516 -13.27922 -13.20335 -12.94754 -12.75887 -12.68845 -12.65984 -12.55773 -12.16558 -11.86011 -11.82046 -11.59822 -11.42556 -11.32511 -10.93196 -10.61510 -10.52664 -10.39204 -9.52148 -9.09065 -8.26226 -6.40357 -0.16314 0.43448 0.50716 0.88160 1.41050 1.43806 1.45603 1.53519 1.94924 2.21336 2.43219 2.64488 2.77263 3.07985 3.25729 3.65427 3.87422 4.04093 4.12414 4.16625 4.20880 4.23217 4.27637 4.39044 4.46595 4.49990 4.59705 4.64592 4.74054 4.83112 4.97800 5.10216 5.15505 5.16162 5.20368 5.30265 5.36373 5.45893 5.47260 5.60951 5.66111 5.71497 5.76802 5.86120 6.06551 6.18575 6.53180 6.57402 6.74427 6.75744 7.29759 8.86846 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.002017 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.711302 B =13880.473399 C =15459.817329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.183 4.183 3 C 0.165 3.835 4 H 0.087 0.913 5 C -0.157 4.157 6 N -0.683 5.683 7 C 0.520 3.480 8 O -0.532 6.532 9 C 0.502 3.498 10 O -0.520 6.520 11 N -0.629 5.629 12 C 0.170 3.830 13 C -0.169 4.169 14 C -0.050 4.050 15 C -0.228 4.228 16 C 0.127 3.873 17 O -0.343 6.343 18 C 0.084 3.916 19 C 0.027 3.973 20 C -0.545 4.545 21 H 0.074 0.926 22 C -0.001 4.001 23 N -0.932 5.932 24 Si 0.978 3.022 25 H -0.263 1.263 26 H -0.284 1.284 27 H -0.262 1.262 28 C -0.182 4.182 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.418 0.582 36 H 0.436 0.564 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.136 0.864 40 H 0.066 0.934 41 H 0.063 0.937 42 H -0.005 1.005 43 H -0.003 1.003 44 H 0.267 0.733 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 8.175 28.674 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.201 4.201 3 C 0.063 3.937 4 H 0.105 0.895 5 C -0.215 4.215 6 N -0.335 5.335 7 C 0.300 3.700 8 O -0.409 6.409 9 C 0.284 3.716 10 O -0.395 6.395 11 N -0.277 5.277 12 C 0.076 3.924 13 C -0.189 4.189 14 C -0.068 4.068 15 C -0.247 4.247 16 C 0.081 3.919 17 O -0.257 6.257 18 C 0.010 3.990 19 C -0.010 4.010 20 C -0.583 4.583 21 H 0.092 0.908 22 C -0.199 4.199 23 N -0.571 5.571 24 Si 0.801 3.199 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.187 1.187 28 C -0.203 4.203 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.256 0.744 36 H 0.277 0.723 37 H 0.185 0.815 38 H 0.186 0.814 39 H 0.154 0.846 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.014 0.986 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.631 7.839 28.657 29.826 hybrid contribution 0.108 -0.488 -1.144 1.249 sum -2.523 7.351 27.512 28.589 Atomic orbital electron populations 1.24220 0.95763 1.03284 0.96041 1.23000 0.96344 0.97331 1.03464 1.20353 0.93434 0.97352 0.82580 0.89469 1.22124 0.99500 1.02370 0.97527 1.45981 1.54633 1.07711 1.25216 1.19640 0.80657 0.84833 0.84888 1.90768 1.54027 1.37340 1.58805 1.20582 0.80473 0.83863 0.86644 1.90862 1.51869 1.37746 1.59027 1.42996 1.57516 1.09624 1.17604 1.17380 0.94738 0.96788 0.83462 1.21146 0.97517 1.00458 0.99732 1.21158 0.97577 0.97306 0.90790 1.21599 1.02131 0.98200 1.02755 1.19188 0.94572 0.90071 0.88116 1.86099 1.65236 1.52788 1.21617 1.22920 0.95852 1.00243 0.80018 1.18977 0.96054 0.93280 0.92720 1.21371 1.25280 1.15391 0.96267 0.90802 1.26092 0.95878 0.94414 1.03556 1.70128 1.35337 1.18274 1.33405 0.85304 0.78912 0.78308 0.77336 1.18755 1.20895 1.18699 1.20214 1.05196 1.03956 0.90900 0.88168 0.86301 0.85245 0.91317 0.93035 0.89557 0.74436 0.72309 0.81490 0.81352 0.84583 0.91603 0.91862 0.98619 0.98475 0.92467 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 14.32 67.77 0.97 -0.43 16 2 C -0.18 -1.80 8.96 25.64 0.23 -1.58 16 3 C 0.17 2.13 2.93 44.25 0.13 2.26 16 4 H 0.09 1.29 7.23 -2.38 -0.02 1.28 16 5 C -0.16 -1.72 9.47 71.98 0.68 -1.03 16 6 N -0.68 -11.20 5.06 -447.53 -2.27 -13.47 16 7 C 0.52 10.71 7.85 87.24 0.68 11.39 16 8 O -0.53 -12.07 16.15 -3.30 -0.05 -12.13 16 9 C 0.50 12.16 7.62 87.24 0.66 12.82 16 10 O -0.52 -16.02 14.16 -3.32 -0.05 -16.07 16 11 N -0.63 -13.41 5.32 -304.89 -1.62 -15.03 16 12 C 0.17 4.40 6.27 38.20 0.24 4.64 16 13 C -0.17 -3.34 9.96 22.42 0.22 -3.11 16 14 C -0.05 -1.06 10.03 22.24 0.22 -0.83 16 15 C -0.23 -6.71 9.04 22.40 0.20 -6.51 16 16 C 0.13 4.69 6.68 22.49 0.15 4.84 16 17 O -0.34 -15.41 10.13 -92.36 -0.94 -16.35 16 18 C 0.08 3.74 4.68 71.98 0.34 4.08 16 19 C 0.03 1.51 5.34 29.85 0.16 1.67 16 20 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 21 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 22 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 23 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 24 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 28 C -0.18 -6.24 8.59 22.50 0.19 -6.04 16 29 H 0.10 0.90 7.84 -2.91 -0.02 0.87 16 30 H 0.12 0.77 8.06 -2.91 -0.02 0.75 16 31 H 0.13 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.42 6.46 8.06 -92.71 -0.75 5.71 16 36 H 0.44 6.69 8.30 -92.71 -0.77 5.92 16 37 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.14 3.87 6.29 -2.91 -0.02 3.85 16 40 H 0.07 2.71 7.67 -2.39 -0.02 2.69 16 41 H 0.06 2.63 7.65 -2.39 -0.02 2.61 16 42 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 43 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.12 4.44 6.42 -2.91 -0.02 4.42 16 Total: -1.00 -74.95 389.73 2.68 -72.27 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.49 Total: 20.56 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.78 Total: -8.24 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -3.60 Total: -85.78 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.04 Total: -44.54 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -74.95 2.68 -72.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133735226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.588 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds