Wall clock time and date at job start Tue Mar 31 2020 18:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46832 * 2 1 4 4 C 1.50699 * 109.46954 * 119.99606 * 2 1 3 5 5 H 1.07996 * 120.00096 * 120.00656 * 4 2 1 6 6 C 1.37885 * 120.00123 * 299.99852 * 4 2 1 7 7 N 1.31512 * 120.00248 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99724 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47325 * 89.99542 * 8 6 4 10 10 H 1.48501 * 109.47080 * 209.99568 * 8 6 4 11 11 H 1.48503 * 109.47095 * 329.99762 * 8 6 4 12 12 N 1.46495 * 109.47488 * 239.99683 * 2 1 3 13 13 C 1.34776 * 120.00398 * 84.99708 * 12 2 1 14 14 O 1.21287 * 119.99457 * 0.02562 * 13 12 2 15 15 C 1.50694 * 120.00685 * 180.02562 * 13 12 2 16 16 H 1.09007 * 109.31509 * 330.11737 * 15 13 12 17 17 C 1.53187 * 109.29668 * 90.05936 * 15 13 12 18 18 O 1.43253 * 108.53521 * 169.53907 * 17 15 13 19 19 C 1.42969 * 112.98313 * 291.48929 * 18 17 15 20 20 C 1.50341 * 109.81088 * 49.59689 * 19 18 17 21 21 O 1.21291 * 118.83181 * 164.09543 * 20 19 18 22 22 N 1.33864 * 122.33754 * 344.07956 * 20 19 18 23 23 C 1.46501 * 118.73270 * 181.90346 * 22 20 19 24 24 C 1.50695 * 109.47164 * 272.89172 * 23 22 20 25 25 C 1.38244 * 119.99901 * 95.44556 * 24 23 22 26 26 C 1.38231 * 120.00243 * 180.02562 * 25 24 23 27 27 C 1.38242 * 119.99921 * 359.96098 * 26 25 24 28 28 C 1.38232 * 119.99772 * 0.27356 * 27 26 25 29 29 C 1.38231 * 120.00529 * 275.47168 * 24 23 22 30 30 H 1.09002 * 109.47022 * 60.00613 * 1 2 3 31 31 H 1.08998 * 109.46634 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47616 * 300.00548 * 1 2 3 33 33 H 0.97001 * 119.99859 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99759 * 265.00130 * 12 2 1 35 35 H 1.08994 * 109.78985 * 49.75285 * 17 15 13 36 36 H 1.08996 * 109.55006 * 289.17666 * 17 15 13 37 37 H 1.09000 * 109.41490 * 289.49473 * 19 18 17 38 38 H 1.08999 * 109.35259 * 169.67050 * 19 18 17 39 39 H 1.09004 * 109.47027 * 152.89694 * 23 22 20 40 40 H 1.09001 * 109.47048 * 32.89449 * 23 22 20 41 41 H 1.08000 * 119.99478 * 0.02562 * 25 24 23 42 42 H 1.07996 * 120.00287 * 179.97438 * 26 25 24 43 43 H 1.07995 * 119.99681 * 179.97438 * 27 26 25 44 44 H 1.07995 * 119.99893 * 179.72902 * 28 27 26 45 45 H 1.07997 * 119.99884 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8587 3.5567 8 14 0.6247 1.2793 2.6540 9 1 -0.8029 0.8729 2.6996 10 1 0.9758 1.9954 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5876 16 1 3.3237 -1.5319 -3.2904 17 6 1.4594 -1.3151 -4.3543 18 8 1.9202 -1.7684 -5.6327 19 6 2.3102 -0.6985 -6.4971 20 6 3.2401 0.2317 -5.7688 21 8 3.8984 1.0221 -6.4115 22 7 3.3671 0.2189 -4.4363 23 6 4.2654 1.1889 -3.8051 24 6 5.6629 0.6267 -3.7643 25 6 6.5665 0.9479 -4.7601 26 6 7.8483 0.4319 -4.7231 27 6 8.2270 -0.4047 -3.6897 28 6 7.3221 -0.7297 -2.6965 29 6 6.0415 -0.2104 -2.7315 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9033 -0.5274 4.4376 34 1 2.2491 -1.6318 -1.1524 35 1 0.6954 -0.5499 -4.4912 36 1 1.0440 -2.1545 -3.7967 37 1 1.4244 -0.1490 -6.8158 38 1 2.8173 -1.1068 -7.3712 39 1 3.9255 1.3914 -2.7894 40 1 4.2627 2.1146 -4.3806 41 1 6.2707 1.6019 -5.5671 42 1 8.5540 0.6824 -5.5012 43 1 9.2284 -0.8081 -3.6610 44 1 7.6166 -1.3867 -1.8916 45 1 5.3357 -0.4613 -1.9535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171403403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:38 Heat of formation + Delta-G solvation = -69.850679 kcal Electronic energy + Delta-G solvation = -29532.869746 eV Core-core repulsion = 25516.124449 eV Total energy + Delta-G solvation = -4016.745297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.25219 -39.17774 -39.03995 -37.76465 -35.75467 -34.92788 -32.68482 -32.05523 -30.85954 -30.77830 -29.60710 -28.14385 -25.71623 -25.28861 -24.56933 -22.52210 -21.71517 -21.43336 -19.95700 -19.17791 -18.11899 -17.73326 -17.20563 -16.71295 -16.29811 -16.00679 -15.49302 -15.31508 -15.19515 -14.90769 -14.71822 -14.61965 -14.26739 -14.00096 -13.56592 -13.34265 -13.20940 -13.12710 -12.82326 -12.54036 -12.32610 -12.17877 -12.07738 -11.76879 -11.58713 -11.36526 -11.20931 -10.93055 -10.90277 -10.76563 -10.30813 -10.05392 -9.75950 -9.46401 -9.37176 -8.90152 -8.87450 -8.78131 -8.72825 -8.38492 -6.30885 -4.34761 1.27772 1.45135 2.35920 2.48168 2.97486 3.15349 3.25971 3.28797 3.31235 3.72582 3.88074 4.08671 4.21997 4.51279 4.67098 4.83213 4.88039 4.89940 4.98694 5.03766 5.03828 5.07991 5.17442 5.30314 5.35665 5.38121 5.53169 5.69463 5.81683 6.02516 6.07256 6.13103 6.16307 6.22196 6.40758 6.44556 6.49279 6.53552 6.65533 6.69240 6.97980 7.03097 7.07447 7.20960 7.34953 7.87033 7.95412 8.32019 8.54157 8.69188 9.28749 10.80985 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.004155 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.871872 B = 6737.560655 C = 8244.103310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 H 0.050 0.950 4 C -0.538 4.538 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.884 3.116 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.690 5.690 13 C 0.495 3.505 14 O -0.537 6.537 15 C 0.089 3.911 16 H 0.103 0.897 17 C 0.057 3.943 18 O -0.364 6.364 19 C 0.048 3.952 20 C 0.492 3.508 21 O -0.538 6.538 22 N -0.573 5.573 23 C 0.145 3.855 24 C -0.106 4.106 25 C -0.094 4.094 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.122 4.122 29 C -0.102 4.102 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.268 0.732 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.020 -2.227 -16.795 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.339 5.339 13 C 0.278 3.722 14 O -0.415 6.415 15 C -0.019 4.019 16 H 0.121 0.879 17 C -0.021 4.021 18 O -0.281 6.281 19 C -0.031 4.031 20 C 0.280 3.720 21 O -0.416 6.416 22 N -0.305 5.305 23 C 0.024 3.976 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.140 4.140 29 C -0.121 4.121 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.232 0.768 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.110 0.890 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.135 -1.173 -16.992 17.527 hybrid contribution -0.466 0.465 0.580 0.878 sum 3.669 -0.707 -16.412 16.832 Atomic orbital electron populations 1.22459 0.99076 1.01020 0.99468 1.19173 0.90285 0.94668 0.82484 0.93241 1.20979 1.33648 1.14598 0.88377 0.90059 1.24814 0.95398 0.96614 0.95521 1.69855 1.44553 1.39993 0.98118 0.86901 0.80577 0.83583 0.77570 1.20251 1.22065 1.18732 1.46278 1.64168 1.13996 1.09452 1.20318 0.79491 0.87822 0.84598 1.90711 1.50356 1.15588 1.84856 1.21860 0.96149 0.92415 0.91461 0.87896 1.22956 0.93482 1.01387 0.84237 1.88213 1.84407 1.30663 1.24860 1.22887 0.97788 0.88577 0.93896 1.20924 0.83736 0.85158 0.82206 1.90711 1.45781 1.40115 1.64966 1.47188 1.43183 1.34628 1.05543 1.20612 0.84881 0.91442 1.00708 1.20236 0.96004 0.98880 0.95546 1.21190 0.93065 0.99243 0.97781 1.21136 0.96385 0.98423 0.98676 1.21160 0.99407 0.98350 0.94820 1.21154 0.93684 1.00264 0.98917 1.21164 0.96616 0.96493 0.97802 0.94559 0.92623 0.93296 0.92157 0.76803 0.90795 0.85742 0.89015 0.85098 0.87894 0.88929 0.85607 0.86322 0.86321 0.85912 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.96 37.16 0.33 -2.96 16 2 C 0.24 5.11 2.15 -69.08 -0.15 4.96 16 3 H 0.05 1.20 6.64 -51.92 -0.34 0.85 16 4 C -0.54 -13.47 9.31 -34.44 -0.32 -13.79 16 5 H 0.08 2.14 7.98 -52.49 -0.42 1.72 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -25.20 13.96 55.43 0.77 -24.42 16 8 Si 0.88 20.74 24.37 -169.99 -4.14 16.60 16 9 H -0.28 -6.27 6.87 56.52 0.39 -5.88 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 12 N -0.69 -11.68 5.07 -54.93 -0.28 -11.96 16 13 C 0.50 7.94 5.81 -10.99 -0.06 7.87 16 14 O -0.54 -10.56 14.63 5.55 0.08 -10.48 16 15 C 0.09 1.13 3.39 -69.21 -0.23 0.89 16 16 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 17 C 0.06 0.59 6.18 37.25 0.23 0.82 16 18 O -0.36 -3.87 10.85 -35.23 -0.38 -4.25 16 19 C 0.05 0.49 6.98 35.83 0.25 0.74 16 20 C 0.49 6.74 7.55 -11.57 -0.09 6.65 16 21 O -0.54 -8.63 15.58 5.55 0.09 -8.55 16 22 N -0.57 -7.99 2.55 -169.40 -0.43 -8.42 16 23 C 0.15 2.18 4.80 -5.20 -0.02 2.15 16 24 C -0.11 -1.50 5.43 -104.62 -0.57 -2.07 16 25 C -0.09 -1.27 9.35 -39.58 -0.37 -1.64 16 26 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 27 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 28 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 29 C -0.10 -1.40 9.72 -39.58 -0.38 -1.79 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.40 5.75 8.54 -40.82 -0.35 5.40 16 35 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.71 5.54 -51.93 -0.29 1.43 16 40 H 0.09 1.44 7.29 -51.93 -0.38 1.06 16 41 H 0.13 1.72 7.53 -52.49 -0.40 1.33 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -31.53 367.00 -7.61 -39.14 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.17 Total: 8.51 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.68 Total: -1.70 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.06 Total: -44.81 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.21 Total: -23.28 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.14 Total: 16.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.53 -7.61 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171403403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.707 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds